mRNA_P-littoralis_Contig161.74.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig161.74.1
Unique NamemRNA_P-littoralis_Contig161.74.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
[Close]
BLAST of mRNA_P-littoralis_Contig161.74.1 vs. uniprot
Match: D7FMV4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FMV4_ECTSI)

HSP 1 Score: 173 bits (438), Expect = 3.840e-44
Identity = 91/241 (37.76%), Postives = 138/241 (57.26%), Query Frame = 1 
Query:  259 YSGVIVKSVFSSKMRMIIPVGIEGTGHHAVHTAISEMCKLDTVLCPGACDVNTALFWDMGAAKDESQYKHGLDKLQDAMDALA-MTADGLDNDEICLTVPGKCSVR---MMSFPAHEGPDKALQYIDLKIFAREAERAGIDLRFIYLDRSATNVLISTTQHRTFGGTFSHEARILITNAAVIDSALREVDSGFVSCFSFDGRSDSRQAARVAEDVMPTPDAATMFSHLLLEYATDHSPPST 969
            Y  V+ K   SS+MR++  VG+EGTGHH +   + ++CK D V CP  C +   L+ ++   K  + Y     +L++ M+ LA    + L   E  +   G C  +   MMS+P   G +KALQY+D ++ A EAERAG+D+RF+YL RSA ++L S + H  +GG+F  E+RIL+ N AV+ S  +E+D  F +CF +   +D  QAARVA  + P    A   +  +L +    SPP +
Sbjct:   95 YPVVVEKKAVSSRMRVVFLVGLEGTGHHYMADVLEDVCKKDKVRCPKLCVMAKVLYPELSLPKSRNAYWDARKRLREEMEKLAAFPEESLAEGESTVVSFGACRFQGTGMMSYPNFNGDEKALQYVDFRLVAEEAERAGVDMRFVYLARSAADILTSDSGHHNYGGSFIRESRILLNNLAVVHSTFQELDPSFTTCFRYGEMADPAQAARVAGFLAPNNHTAEKLADQILSHVKIKSPPES 335
[Close]
BLAST of mRNA_P-littoralis_Contig161.74.1 vs. uniprot
Match: D7FMV3_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FMV3_ECTSI)

HSP 1 Score: 172 bits (436), Expect = 1.860e-43
Identity = 91/237 (38.40%), Postives = 133/237 (56.12%), Query Frame = 1 
Query:  238 VQPTPDEYSGVIVKSVFSSKMRMIIPVGIEGTGHHAVHTAISEMCKLDTVLCPGACDVNTALFWDMGAAKDESQYKHGLDKLQDAMDALAM-TADGLDNDEICLTVPGKCSVR--MMSFPAHEGPDKALQYIDLKIFAREAERAGIDLRFIYLDRSATNVLISTTQHRTFGGTFSHEARILITNAAVIDSALREVDSGFVSCFSFDGRSDSRQAARVAEDVMPTPDAATMFSHLLLE 939
            + P   EY  V+ K   SS++R++  VG+EGTGHH       + C    V C  AC +  AL+  +     +  Y+    +L+  ++ LA   A+ +   +  +     C  +  MMSFP   G DKALQY+D ++ A EAERAG+D+RF+YL RSA ++L+S TQH  +GGTF  E+R LI NAAV++S  +E+  GF +CF ++  SD  Q  RVA  + P  D A      +LE
Sbjct:   47 IPPFSFEYPAVVEKKTVSSQLRVMFLVGLEGTGHHYFLNVFDDACTTAAVPCANACPIAKALYPSLATPSTKQDYERARRELRRELENLAAYPAEFMTEGQAAIAQFVTCRSKSGMMSFPNFNGNDKALQYVDFRLLAEEAERAGVDVRFVYLARSARSILVSDTQHNHYGGTFMRESRALINNAAVVESTFQELGPGFATCFRYESMSDPEQTHRVARFIAPDEDTAQRLEGKMLE 283
[Close]
BLAST of mRNA_P-littoralis_Contig161.74.1 vs. uniprot
Match: A0A6H5KIA1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KIA1_9PHAE)

HSP 1 Score: 146 bits (368), Expect = 8.250e-36
Identity = 83/250 (33.20%), Postives = 132/250 (52.80%), Query Frame = 1 
Query:  358 ISEMCKLDTVLCPGACDVNTALFWDMGAAKDESQYKHGLDKLQDAMDALA-MTADGLDNDEICLTVPGKCSVR---MMSFPAHEGPDKALQYIDLKIFAREAERAGIDLRFIYLDRSATNVLISTTQHRTFGGTFSHEARILITNAAVIDSALREVDSGFVSCFSFDGRSDSRQAARVAEDVMPTPDAATMFSHLLLEYATDHSPPSTNLSVVDDQEGWEL------------MSNRLQEKFDLIQHDHC 1059
            + ++CK D V CP  C +   L+ ++   +  + Y     +L++ M+ LA    + L   E  +   G C  +   MMS+P   G +KALQY+D ++ A EAERAG+D+RF+YL RSA ++L S + H  +GG+F  E+RIL+ N AV+ S  +E+D  F +CF +   +D  QAARVA  + P    A   +  +L +    SPP +       + G  L            +  RLQ++ D+++ D C
Sbjct:    5 LEDVCKKDKVRCPKLCVMAKVLYPELSLPESRNAYWDARKRLREEMEKLAAFPEESLAEGESTVVSFGACRFQGTGMMSYPNFNGDEKALQYVDFRLVAEEAERAGVDMRFVYLARSAADILTSDSVHHNYGGSFIRESRILLNNLAVVHSTFQELDPAFTTCFRYGEMADPAQAARVAGFLAPNNRTAEKLADQMLSHVKIKSPPESGNKQSWGEGGKRLRHPEDVDPPKAAVVTRLQQRLDMVEKDVC 254
[Close]
BLAST of mRNA_P-littoralis_Contig161.74.1 vs. uniprot
Match: D7G1E6_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G1E6_ECTSI)

HSP 1 Score: 59.3 bits (142), Expect = 7.980e-7
Identity = 33/95 (34.74%), Postives = 51/95 (53.68%), Query Frame = 1 
Query:  454 SQYKHGLDKLQDAMDALAMTADGLDNDEICLTVPGKCSVRMMSFPAHEGPDKALQYIDLKIFAREAERAGIDLRFIYLDRSATNVLISTTQHRTF 738
            + ++ G D+++D    LA  A  L        + G      +S+P   GP K  QY+DL++ A  AE  G+DLR +Y+ RSA  +L++ T HR F
Sbjct:   36 ASWQQGRDQMRD----LAQRAQTLPTPGTVQLITGG-----ISYPCGNGPQKVQQYVDLRLLAEAAEAEGVDLRVLYMKRSAKELLLADTVHRGF 121
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig161.74.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
D7FMV4_ECTSI3.840e-4437.76Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D7FMV3_ECTSI1.860e-4338.40Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A6H5KIA1_9PHAE8.250e-3633.20Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7G1E6_ECTSI7.980e-734.74Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig161contigP-littoralis_Contig161:309020..312289 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog44056.XP_009035729.1
PFAMsPP2C,Pkinase
Model size2257
Max annot lvl2759|Eukaryota
KEGG koko:K10147,ko:K17506
KEGG Pathwayko04115,map04115
Hectar predicted targeting categorysignal peptide
Exons2
Evalue2.03e-11
EggNOG OGsCOG0631@1|root,KOG0698@2759|Eukaryota
EC3.1.3.16
Descriptionprotein serine/threonine phosphatase activity
Cds size1044
COG categoryT
BRITEko00000,ko00001,ko01000,ko01009
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789779.0808542-UTR-P-littoralis_Contig161:309019..3090671680789779.0808542-UTR-P-littoralis_Contig161:309019..309067Pylaiella littoralis U1_48UTRP-littoralis_Contig161 309020..309067 +
1680789779.1143115-UTR-P-littoralis_Contig161:311124..3122891680789779.1143115-UTR-P-littoralis_Contig161:311124..312289Pylaiella littoralis U1_48UTRP-littoralis_Contig161 311125..312289 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789779.0926816-CDS-P-littoralis_Contig161:309067..3097651680789779.0926816-CDS-P-littoralis_Contig161:309067..309765Pylaiella littoralis U1_48CDSP-littoralis_Contig161 309068..309765 +
1680789779.1027548-CDS-P-littoralis_Contig161:310778..3111241680789779.1027548-CDS-P-littoralis_Contig161:310778..311124Pylaiella littoralis U1_48CDSP-littoralis_Contig161 310779..311124 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig161.74.1prot_P-littoralis_Contig161.74.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig161 309068..311124 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig161.74.1

>prot_P-littoralis_Contig161.74.1 ID=prot_P-littoralis_Contig161.74.1|Name=mRNA_P-littoralis_Contig161.74.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=348bp
MWQTKTTFTAAVFLGTAVVLAYVVGVFVGQQNHVHPGSTQLDRFERKLTT
LQAHAKDDNTSLEVQPTPDEYSGVIVKSVFSSKMRMIIPVGIEGTGHHAV
HTAISEMCKLDTVLCPGACDVNTALFWDMGAAKDESQYKHGLDKLQDAMD
ALAMTADGLDNDEICLTVPGKCSVRMMSFPAHEGPDKALQYIDLKIFARE
AERAGIDLRFIYLDRSATNVLISTTQHRTFGGTFSHEARILITNAAVIDS
ALREVDSGFVSCFSFDGRSDSRQAARVAEDVMPTPDAATMFSHLLLEYAT
DHSPPSTNLSVVDDQEGWELMSNRLQEKFDLIQHDHCYGAQVDHRQL*
back to top

mRNA from alignment at P-littoralis_Contig161:309020..312289+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig161.74.1 ID=mRNA_P-littoralis_Contig161.74.1|Name=mRNA_P-littoralis_Contig161.74.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=3270bp|location=Sequence derived from alignment at P-littoralis_Contig161:309020..312289+ (Pylaiella littoralis U1_48)
AGGAGCGGGCAGACGGTCACTGGAACAACGTCGGCTGATTTGTCGACGAT
GTGGCAGACCAAAACGACATTCACAGCAGCGGTGTTTCTCGGGACTGCTG
TTGTGCTGGCTTACGTGGTGGGTGTGTTTGTTGGGCAGCAGAACCACGTG
CATCCCGGGTCAACGCAGTTGGACCGCTTTGAGCGAAAGTTGACGACGCT
ACAAGCACACGCAAAGGACGATAATACCTCCTTGGAGGTACAACCCACTC
CCGACGAGTATTCAGGCGTCATAGTGAAATCGGTGTTCAGCTCCAAAATG
CGCATGATCATTCCAGTGGGAATCGAGGGCACTGGCCATCATGCAGTACA
CACGGCGATAAGTGAGATGTGCAAGCTGGACACGGTTTTGTGTCCAGGTG
CTTGTGATGTCAACACGGCATTGTTCTGGGACATGGGTGCCGCGAAGGAT
GAATCCCAGTACAAGCACGGTCTCGACAAGCTGCAAGACGCGATGGACGC
ACTGGCGATGACGGCAGATGGGTTGGACAATGATGAGATATGTTTGACAG
TTCCTGGGAAGTGCTCGGTCAGGATGATGTCGTTTCCTGCACATGAAGGA
CCGGACAAAGCGTTGCAGTACATCGACTTGAAGATCTTTGCCAGGGAGGC
TGAGAGGGCGGGGATCGATCTTCGATTTATCTACCTAGACCGCTCAGCGA
CGAACGTTCTAATCTCCACAACGCAGCATCGCACTTTTGGCGGCACGTGA
GTTCCTTCGTGATAGAGCGATGCGCCAATTTTCACCTTGTAGTATCCTTC
TACTCTACACCGCTTGACAACATTGCGATACATGTAAATGCCGAACTTTG
AAAAAATTGTTTTTACAGATATACGCCGCCTGGTCGAATTCAGAAATTAA
AATTTCTTGAGTTTTTTTTATGTTTTGGATTTTTCTAGGACGCCAGAAAG
GTCTCCCCCTCAAAAAATCAAGGTCGGGTGGAGGTTGGCCAACTATGCGT
ACGATCGCAGGTTGGGATCACTGTCCCAACCTCCGTCCCCAACCTCGGGA
GGTTGGGAACACCTCCCAACGTCCCCCAACCTACCCCTCTGGCCACCTGT
GTAGGCCGATTAATCAGGGCTTTGAATTGAAGCGATGAGGGGGTACACGG
AGTATACATCATACGAGTTAAACTTTACAGTCTCTAAATCGTAAAAAACG
CGTCCGACTCGAAATAAACCGCACTGTACAGTACGAGGCCAATCATATGC
AACAAGCGTCGCTGGCTGCACTGCATGCAAAAGGACAACACAGCATGGTC
CATCAGCATCGGTAATACCCACTGTTGGAGCCTGTAATGTATATTTGTCA
ACATGCCTAGCCTACGTGCCGTTCCTTACGAATACCTGATCCGAAAAACC
CAGACTACAAGATGAAGTAATAATGTTCGGCATTCATGCTTCCTACCGCG
GCAAAAACAAAATGCGACATTGTCGAGGAGAGCGTGTTCCTCGTCGCGTC
ATTTGTCAACGGTATTTTGTGCACGCGGATTGCATCGGTCAGCAGGTGGG
CGCCACACAGAGCTATCAACGCGCGCTAATATAACTATTCGTCTGGCACA
CGGACAATATCGACCATATTTGAGCTATCTCCACAGTTTAAAATATGCAG
CTGGTATCCTTCAGTGTCCGCAACAAGGACGCCCCTCAGTCTCCCGTGCC
CGCCCCTTTAACTTGCCGTCGCGTCATGTATTGTTTTTCGGTGAACTACA
ACCACGTAGGTTTTCCCACGAAGCCCGGATCTTGATTACAAACGCCGCGG
TAATAGACTCGGCCCTTCGTGAGGTGGATTCCGGCTTCGTTTCATGCTTC
TCCTTCGACGGACGTTCCGACTCAAGGCAGGCCGCACGGGTTGCGGAAGA
TGTAATGCCGACACCGGACGCGGCAACAATGTTTTCGCATTTACTTCTGG
AGTACGCCACCGATCATTCGCCACCTTCCACGAATTTATCTGTCGTGGAC
GATCAGGAAGGATGGGAGTTGATGTCGAACCGACTTCAGGAGAAGTTTGA
CCTGATACAGCATGATCATTGCTACGGAGCACAAGTCGATCACCGGCAAC
TTTGAGTCATCACTTACGGAAGGGCGGTGTGATTTGTTTGCGGTCAGATT
ATGCAGCGTGAGGTAGACAGCGATGCCTGATCCAAAGTTACAGGTTTCTA
TCTATCATACGGACGTTAACTGTAGCCACTATGGCAGGATAGAAATCGGA
ATGATGACGCTAAATATATACCTGTACTTCAAACTTTATTCGAAAGTGCC
TGCATATTGTCAATATCTTCATACCTCGGGCGTGCGCATAGTGGAGTGAA
AAATGTGATTGTCCCTCACGAGAATTCCATGTGTACCTTGATCTCGGTCT
CTGCCCGGAAATTTCAACTCTTGTGTGGTCCACAAGCGGGATATCGTTTT
GGTTGGGCGTCGATTACTTGTACTCCCAGACATGCGGGGTTCATCCGGGT
GGGTGCTGATGATTCTGAACGTGCTAGCGCGTACGCTTTTTTCATTGGTA
GACAGGCAACATACCACTCAAGGATTGTTTTCTAGGGCGACTCTGATAGT
TTCTTACACTCCGGGGAACTATTTTGGGAGTGAACACCGAGCAATTTTAT
AGTAAAACCGCCGGGGCAGCGTGTAAAGATGCGGGCAGACAAGAACGGAG
ACATTTTTTGGTTGTGCTTTGTATGCAAATGAACGTAGCTCTCGTAACTT
GTGTGATGTGGTAGATTGTCGTCTCGGGCAATGCCGAAAGACCCGAGAAA
AAAATCCTTAGGACATACAAACGTTCACATCTGCCAAGGGTCTGGTACGC
ATCTGGGCAATCTTTGACAGTGACACGCACCTTCGCTACTGACTCTCCTG
GAAGTAGTATTGGTTTTTTGGTTGCCTCCTGGTAACTCGTGAACCTCGAA
CAACCGGTCGTTCGTGTGGACCACATATTTCGGTGTTCCTCGATGTCGGA
CCACAAAAAAGTGTCTGATGCACAGGTGGCCTATCGGATCACCCCTCTAA
ATGTTATCTCTGAAAATATTTGGTAACTCGTTTGTAGGTGGGCAATTTTA
CTCTGCAATGGGTGTTGTCCATAGTGCTTTGGTTTTGTGTGTTCTAGATT
CGAATTTGGTACACTTCGAAGGCACGTGGAGTTACGTGGGGGGTACATCT
TTGTAGGAACTTTGCCCCGGGGGGGGGATATGTTGCACCCGTGGCAAGCT
CGGGAAGGGGGGGTGTGGAT
back to top

Coding sequence (CDS) from alignment at P-littoralis_Contig161:309020..312289+

>mRNA_P-littoralis_Contig161.74.1 ID=mRNA_P-littoralis_Contig161.74.1|Name=mRNA_P-littoralis_Contig161.74.1|organism=Pylaiella littoralis U1_48|type=CDS|length=1044bp|location=Sequence derived from alignment at P-littoralis_Contig161:309020..312289+ (Pylaiella littoralis U1_48)
ATGTGGCAGACCAAAACGACATTCACAGCAGCGGTGTTTCTCGGGACTGC
TGTTGTGCTGGCTTACGTGGTGGGTGTGTTTGTTGGGCAGCAGAACCACG
TGCATCCCGGGTCAACGCAGTTGGACCGCTTTGAGCGAAAGTTGACGACG
CTACAAGCACACGCAAAGGACGATAATACCTCCTTGGAGGTACAACCCAC
TCCCGACGAGTATTCAGGCGTCATAGTGAAATCGGTGTTCAGCTCCAAAA
TGCGCATGATCATTCCAGTGGGAATCGAGGGCACTGGCCATCATGCAGTA
CACACGGCGATAAGTGAGATGTGCAAGCTGGACACGGTTTTGTGTCCAGG
TGCTTGTGATGTCAACACGGCATTGTTCTGGGACATGGGTGCCGCGAAGG
ATGAATCCCAGTACAAGCACGGTCTCGACAAGCTGCAAGACGCGATGGAC
GCACTGGCGATGACGGCAGATGGGTTGGACAATGATGAGATATGTTTGAC
AGTTCCTGGGAAGTGCTCGGTCAGGATGATGTCGTTTCCTGCACATGAAG
GACCGGACAAAGCGTTGCAGTACATCGACTTGAAGATCTTTGCCAGGGAG
GCTGAGAGGGCGGGGATCGATCTTCGATTTATCTACCTAGACCGCTCAGC
GACGAACGTTCTAATCTCCACAACGCAGCATCGCACTTTTGGCGGCACGT
TTTCCCACGAAGCCCGGATCTTGATTACAAACGCCGCGGTAATAGACTCG
GCCCTTCGTGAGGTGGATTCCGGCTTCGTTTCATGCTTCTCCTTCGACGG
ACGTTCCGACTCAAGGCAGGCCGCACGGGTTGCGGAAGATGTAATGCCGA
CACCGGACGCGGCAACAATGTTTTCGCATTTACTTCTGGAGTACGCCACC
GATCATTCGCCACCTTCCACGAATTTATCTGTCGTGGACGATCAGGAAGG
ATGGGAGTTGATGTCGAACCGACTTCAGGAGAAGTTTGACCTGATACAGC
ATGATCATTGCTACGGAGCACAAGTCGATCACCGGCAACTTTGA
back to top