mRNA_P-littoralis_Contig161.71.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig161.71.1
Unique NamemRNA_P-littoralis_Contig161.71.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
[Close]
BLAST of mRNA_P-littoralis_Contig161.71.1 vs. uniprot
Match: A0A6H5K2J8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K2J8_9PHAE)

HSP 1 Score: 146 bits (369), Expect = 4.900e-42
Identity = 69/72 (95.83%), Postives = 69/72 (95.83%), Query Frame = 3 
Query:    3 FRRNSQAMYDRPGAPLRLKVRLLQAEVVETLLYGFVTWNLKPAEYRKLRSAHHFFLLRCIGWKKRERTDRPL 218
            FRRNSQAMYDRPG PLRLKVRLLQAEVVETLLYG VTWNLKPAEYRKLRSAHHFFLLRCIGWKKRER DRPL
Sbjct:  156 FRRNSQAMYDRPGGPLRLKVRLLQAEVVETLLYGCVTWNLKPAEYRKLRSAHHFFLLRCIGWKKRERKDRPL 227
[Close]
BLAST of mRNA_P-littoralis_Contig161.71.1 vs. uniprot
Match: A0A6H5JI05_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JI05_9PHAE)

HSP 1 Score: 97.1 bits (240), Expect = 1.000e-23
Identity = 45/72 (62.50%), Postives = 53/72 (73.61%), Query Frame = 3 
Query:    3 FRRNSQAMYDRPGAPLRLKVRLLQAEVVETLLYGFVTWNLKPAEYRKLRSAHHFFLLRCIGWKKRERTDRPL 218
            +RRNS +MYDR  A  +LK+RLLQAEVVETLLYG  +W+L    Y KL   H  FL RCIGW KR+R+DRPL
Sbjct:   66 YRRNSASMYDRRRADRQLKIRLLQAEVVETLLYGCASWSLTAEHYTKLNGTHRQFLTRCIGWSKRKRSDRPL 137
[Close]
BLAST of mRNA_P-littoralis_Contig161.71.1 vs. uniprot
Match: A0A6H5L0D7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L0D7_9PHAE)

HSP 1 Score: 97.1 bits (240), Expect = 1.300e-23
Identity = 45/72 (62.50%), Postives = 53/72 (73.61%), Query Frame = 3 
Query:    3 FRRNSQAMYDRPGAPLRLKVRLLQAEVVETLLYGFVTWNLKPAEYRKLRSAHHFFLLRCIGWKKRERTDRPL 218
            +RRNS +MYDR  A  +LK+RLLQAEVVETLLYG  +W+L    Y KL   H  FL RCIGW KR+R+DRPL
Sbjct:   78 YRRNSASMYDRRRADRQLKIRLLQAEVVETLLYGCASWSLTAEHYTKLNGTHRQFLTRCIGWSKRKRSDRPL 149
[Close]
BLAST of mRNA_P-littoralis_Contig161.71.1 vs. uniprot
Match: A0A6H5L5J5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L5J5_9PHAE)

HSP 1 Score: 100 bits (248), Expect = 2.090e-23
Identity = 47/72 (65.28%), Postives = 53/72 (73.61%), Query Frame = 3 
Query:    3 FRRNSQAMYDRPGAPLRLKVRLLQAEVVETLLYGFVTWNLKPAEYRKLRSAHHFFLLRCIGWKKRERTDRPL 218
            FRRNS +MYDRP A   LK+RLLQAEVVETLLYG  +W+L    Y KL   H  FL RCIGW KR+R+DRPL
Sbjct:  149 FRRNSASMYDRPRANRPLKIRLLQAEVVETLLYGCASWSLTAEHYTKLNGTHRQFLTRCIGWSKRKRSDRPL 220
[Close]
BLAST of mRNA_P-littoralis_Contig161.71.1 vs. uniprot
Match: A0A6H5K1L2_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K1L2_9PHAE)

HSP 1 Score: 94.4 bits (233), Expect = 6.740e-23
Identity = 44/72 (61.11%), Postives = 52/72 (72.22%), Query Frame = 3 
Query:    3 FRRNSQAMYDRPGAPLRLKVRLLQAEVVETLLYGFVTWNLKPAEYRKLRSAHHFFLLRCIGWKKRERTDRPL 218
            +RRNS +MYDR  A  + K+RLLQAEVVETLLYG  +W+L    Y KL   H  FL RCIGW KR+R+DRPL
Sbjct:   62 YRRNSASMYDRRRANRQRKIRLLQAEVVETLLYGCASWSLTAEHYTKLNGTHRQFLTRCIGWSKRKRSDRPL 133
[Close]
BLAST of mRNA_P-littoralis_Contig161.71.1 vs. uniprot
Match: A0A6H5L6M5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L6M5_9PHAE)

HSP 1 Score: 94.7 bits (234), Expect = 1.060e-22
Identity = 44/72 (61.11%), Postives = 52/72 (72.22%), Query Frame = 3 
Query:    3 FRRNSQAMYDRPGAPLRLKVRLLQAEVVETLLYGFVTWNLKPAEYRKLRSAHHFFLLRCIGWKKRERTDRPL 218
            +RR S +MYDR  A  +LK+RLLQAEVVETLLYG  +W+L    Y KL   H  FL RCIGW KR+R+DRPL
Sbjct:   22 YRRKSASMYDRRRADRQLKIRLLQAEVVETLLYGCASWSLTAEHYTKLNGTHRQFLTRCIGWSKRKRSDRPL 93
[Close]
BLAST of mRNA_P-littoralis_Contig161.71.1 vs. uniprot
Match: A0A6H5JKH3_9PHAE (Reverse transcriptase domain-containing protein (Fragment) n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JKH3_9PHAE)

HSP 1 Score: 94.0 bits (232), Expect = 1.260e-22
Identity = 44/72 (61.11%), Postives = 52/72 (72.22%), Query Frame = 3 
Query:    3 FRRNSQAMYDRPGAPLRLKVRLLQAEVVETLLYGFVTWNLKPAEYRKLRSAHHFFLLRCIGWKKRERTDRPL 218
            +RRNS +MYDR  A  +LK+RLLQAEVVETLLYG  +W+L    Y KL   H  FL RCIGW KR+ +DRPL
Sbjct:   98 YRRNSASMYDRRRADRQLKIRLLQAEVVETLLYGCASWSLTAEHYTKLNGTHRQFLARCIGWSKRKCSDRPL 169
[Close]
BLAST of mRNA_P-littoralis_Contig161.71.1 vs. uniprot
Match: A0A6H5JPY3_9PHAE (Reverse transcriptase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JPY3_9PHAE)

HSP 1 Score: 97.1 bits (240), Expect = 1.570e-22
Identity = 45/72 (62.50%), Postives = 53/72 (73.61%), Query Frame = 3 
Query:    3 FRRNSQAMYDRPGAPLRLKVRLLQAEVVETLLYGFVTWNLKPAEYRKLRSAHHFFLLRCIGWKKRERTDRPL 218
            +RRNS +MYDR  A  +LK+RLLQAEVVETLLYG  +W+L    Y KL   H  FL RCIGW KR+R+DRPL
Sbjct:   98 YRRNSASMYDRRRADRQLKIRLLQAEVVETLLYGCASWSLTAEHYTKLNGTHRQFLTRCIGWSKRKRSDRPL 169
[Close]
BLAST of mRNA_P-littoralis_Contig161.71.1 vs. uniprot
Match: A0A6H5L376_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L376_9PHAE)

HSP 1 Score: 97.4 bits (241), Expect = 1.780e-22
Identity = 45/72 (62.50%), Postives = 53/72 (73.61%), Query Frame = 3 
Query:    3 FRRNSQAMYDRPGAPLRLKVRLLQAEVVETLLYGFVTWNLKPAEYRKLRSAHHFFLLRCIGWKKRERTDRPL 218
            +RRNS +MYDR  A  +LK+RLLQAEVVETLLYG  +W+L    Y KL   H  FL RCIGW KR+R+DRPL
Sbjct:  120 YRRNSASMYDRRRADCQLKIRLLQAEVVETLLYGCASWSLTAEHYTKLNGTHRQFLTRCIGWSKRKRSDRPL 191
[Close]
BLAST of mRNA_P-littoralis_Contig161.71.1 vs. uniprot
Match: A0A6H5JEU3_9PHAE (Reverse transcriptase domain-containing protein n=3 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JEU3_9PHAE)

HSP 1 Score: 97.1 bits (240), Expect = 1.920e-22
Identity = 45/72 (62.50%), Postives = 53/72 (73.61%), Query Frame = 3 
Query:    3 FRRNSQAMYDRPGAPLRLKVRLLQAEVVETLLYGFVTWNLKPAEYRKLRSAHHFFLLRCIGWKKRERTDRPL 218
            +RRNS +MYDR  A  +LK+RLLQAEVVETLLYG  +W+L    Y KL   H  FL RCIGW KR+R+DRPL
Sbjct:   98 YRRNSASMYDRRRADRQLKIRLLQAEVVETLLYGCASWSLTAEHYTKLNGTHRQFLTRCIGWSKRKRSDRPL 169
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig161.71.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5K2J8_9PHAE4.900e-4295.83Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JI05_9PHAE1.000e-2362.50Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5L0D7_9PHAE1.300e-2362.50Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5L5J5_9PHAE2.090e-2365.28Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K1L2_9PHAE6.740e-2361.11Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]
A0A6H5L6M5_9PHAE1.060e-2261.11Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JKH3_9PHAE1.260e-2261.11Reverse transcriptase domain-containing protein (F... [more]
A0A6H5JPY3_9PHAE1.570e-2262.50Reverse transcriptase domain-containing protein n=... [more]
A0A6H5L376_9PHAE1.780e-2262.50Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JEU3_9PHAE1.920e-2262.50Reverse transcriptase domain-containing protein n=... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig161contigP-littoralis_Contig161:296053..296270 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size220
Hectar predicted targeting categoryother localisation
Exons1
Cds size195
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789778.9403124-UTR-P-littoralis_Contig161:296052..2960751680789778.9403124-UTR-P-littoralis_Contig161:296052..296075Pylaiella littoralis U1_48UTRP-littoralis_Contig161 296053..296075 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789778.9634826-CDS-P-littoralis_Contig161:296075..2962701680789778.9634826-CDS-P-littoralis_Contig161:296075..296270Pylaiella littoralis U1_48CDSP-littoralis_Contig161 296076..296270 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig161.71.1prot_P-littoralis_Contig161.71.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig161 296076..296270 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig161.71.1

>prot_P-littoralis_Contig161.71.1 ID=prot_P-littoralis_Contig161.71.1|Name=mRNA_P-littoralis_Contig161.71.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=65bp
MYDRPGAPLRLKVRLLQAEVVETLLYGFVTWNLKPAEYRKLRSAHHFFLL
RCIGWKKRERTDRPL
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mRNA from alignment at P-littoralis_Contig161:296053..296270+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig161.71.1 ID=mRNA_P-littoralis_Contig161.71.1|Name=mRNA_P-littoralis_Contig161.71.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=218bp|location=Sequence derived from alignment at P-littoralis_Contig161:296053..296270+ (Pylaiella littoralis U1_48)
GCTTCCGGCGCAACAGCCAGGCAATGTACGACCGCCCGGGGGCCCCTCTT
CGACTAAAAGTACGACTCCTCCAAGCTGAAGTCGTTGAGACCCTACTCTA
CGGGTTTGTCACATGGAATCTGAAGCCAGCGGAGTACCGCAAGCTTCGGT
CAGCCCACCACTTCTTCCTCCTTCGCTGCATCGGATGGAAAAAGAGGGAG
AGAACAGACCGACCCCTC
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Coding sequence (CDS) from alignment at P-littoralis_Contig161:296053..296270+

>mRNA_P-littoralis_Contig161.71.1 ID=mRNA_P-littoralis_Contig161.71.1|Name=mRNA_P-littoralis_Contig161.71.1|organism=Pylaiella littoralis U1_48|type=CDS|length=195bp|location=Sequence derived from alignment at P-littoralis_Contig161:296053..296270+ (Pylaiella littoralis U1_48)
ATGTACGACCGCCCGGGGGCCCCTCTTCGACTAAAAGTACGACTCCTCCA
AGCTGAAGTCGTTGAGACCCTACTCTACGGGTTTGTCACATGGAATCTGA
AGCCAGCGGAGTACCGCAAGCTTCGGTCAGCCCACCACTTCTTCCTCCTT
CGCTGCATCGGATGGAAAAAGAGGGAGAGAACAGACCGACCCCTC
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