prot_P-littoralis_Contig161.50.1 (polypeptide) Pylaiella littoralis U1_48

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_P-littoralis_Contig161.50.1
Unique Nameprot_P-littoralis_Contig161.50.1
Typepolypeptide
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Sequence length282
Homology
[Close]
BLAST of mRNA_P-littoralis_Contig161.50.1 vs. uniprot
Match: A0A6H5KI74_9PHAE (RRM domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KI74_9PHAE)

HSP 1 Score: 171 bits (433), Expect = 1.990e-48
Identity = 84/101 (83.17%), Postives = 91/101 (90.10%), Query Frame = 0 
Query:    3 RYGDPEPRG-GPPNIDGMVTLKVDNIAYTCTVEELRESFETYGKLGDVYIPRDMRTGDPRGFAFVRYLDKRDADDAIDRLDGERMNGRELRIEYARKRRPG 102
            R+G  + RG GPPNIDGMVTLKVDNIA+TC+ EELRE FE  GKLGDVYIPRDMRTG+PRGFAFVRYLDKRDADDA+DRLDG R NGRELRI+YARKRRPG
Sbjct:    5 RHGGSDQRGSGPPNIDGMVTLKVDNIAFTCSPEELREVFEGCGKLGDVYIPRDMRTGEPRGFAFVRYLDKRDADDAVDRLDGTRFNGRELRIQYARKRRPG 105
[Close]
BLAST of mRNA_P-littoralis_Contig161.50.1 vs. uniprot
Match: A0A6H5KLI3_9PHAE (RRM domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KLI3_9PHAE)

HSP 1 Score: 151 bits (382), Expect = 8.810e-41
Identity = 69/99 (69.70%), Postives = 87/99 (87.88%), Query Frame = 0 
Query:    4 YGDPEPRG-GPPNIDGMVTLKVDNIAYTCTVEELRESFETYGKLGDVYIPRDMRTGDPRGFAFVRYLDKRDADDAIDRLDGERMNGRELRIEYARKRRP 101
            +GDP  RG GPPNI+GM+TLKVDN+ Y  ++++LR  FE YG+LGDVY+PRD+RTG+PRGFAFVR++D+RDADDAIDR+DGE   GRELRI+YA+KRRP
Sbjct:   10 FGDPGMRGNGPPNIEGMITLKVDNVPYNSSIDDLRRIFEKYGELGDVYMPRDLRTGEPRGFAFVRFMDQRDADDAIDRMDGEFFAGRELRIQYAKKRRP 108
[Close]
BLAST of mRNA_P-littoralis_Contig161.50.1 vs. uniprot
Match: D8LGH4_ECTSI (Serine/arginine rich splicing factor, putative n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LGH4_ECTSI)

HSP 1 Score: 146 bits (369), Expect = 1.490e-38
Identity = 71/83 (85.54%), Postives = 76/83 (91.57%), Query Frame = 0 
Query:   19 MVTLKVDNIAYTCTVEELRESFETYGKLGDVYIPRDMRTGDPRGFAFVRYLDKRDADDAIDRLDGERMNGRELRIEYARKRRP 101
            MVTLKVDNIA+TC+ EELRE FE  GKLGDVYIPRDMRTG+PRGFAFVRYLDKRDAD A+DRLDG R NGRELRI+YARKRRP
Sbjct:    1 MVTLKVDNIAFTCSPEELREVFEGCGKLGDVYIPRDMRTGEPRGFAFVRYLDKRDADYAVDRLDGTRFNGRELRIQYARKRRP 83
[Close]
BLAST of mRNA_P-littoralis_Contig161.50.1 vs. uniprot
Match: A0A835ZAC4_9STRA (RRM domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZAC4_9STRA)

HSP 1 Score: 122 bits (307), Expect = 1.000e-31
Identity = 54/89 (60.67%), Postives = 72/89 (80.90%), Query Frame = 0 
Query:   13 PPNIDGMVTLKVDNIAYTCTVEELRESFETYGKLGDVYIPRDMRTGDPRGFAFVRYLDKRDADDAIDRLDGERMNGRELRIEYARKRRP 101
            PP+I GM+TLKVDNI +  T +E+R  F+ YG++GDVYIPRD  TGDPRGFAFVRYLD  DA++A+  +DG+ ++GR LRI++A +RRP
Sbjct:    8 PPDISGMITLKVDNITFRTTADEVRRVFDKYGEVGDVYIPRDKATGDPRGFAFVRYLDNHDAEEALTAMDGKELDGRTLRIQFAMQRRP 96
[Close]
BLAST of mRNA_P-littoralis_Contig161.50.1 vs. uniprot
Match: A0A8J5KC64_HOMAM (Serine/arginine-rich splicing factor 2-like n=15 Tax=Decapoda TaxID=6683 RepID=A0A8J5KC64_HOMAM)

HSP 1 Score: 120 bits (301), Expect = 7.840e-31
Identity = 55/90 (61.11%), Postives = 72/90 (80.00%), Query Frame = 0 
Query:   12 GPPNIDGMVTLKVDNIAYTCTVEELRESFETYGKLGDVYIPRDMRTGDPRGFAFVRYLDKRDADDAIDRLDGERMNGRELRIEYARKRRP 101
            GPP+I GM +LKVDN+ Y  T E+LR SFE YG++GDVYIPRD  + + RGFAFVRY D+RDA+DA++ +DG R++GRELR++ AR  RP
Sbjct:    6 GPPDIKGMTSLKVDNLTYRTTPEDLRRSFEKYGEIGDVYIPRDRFSRESRGFAFVRYYDRRDAEDAMEAMDGRRLDGRELRVQMARYGRP 95
[Close]
BLAST of mRNA_P-littoralis_Contig161.50.1 vs. uniprot
Match: UPI0003593C35 (serine/arginine-rich splicing factor 2 n=1 Tax=Aplysia californica TaxID=6500 RepID=UPI0003593C35)

HSP 1 Score: 121 bits (303), Expect = 2.340e-30
Identity = 60/101 (59.41%), Postives = 75/101 (74.26%), Query Frame = 0 
Query:    1 MSRYGDPEPRGGPPNIDGMVTLKVDNIAYTCTVEELRESFETYGKLGDVYIPRDMRTGDPRGFAFVRYLDKRDADDAIDRLDGERMNGRELRIEYARKRRP 101
            MS YG      GPP+IDGMV+LKVDN+ Y  T E+LR +FE YG +GDVYIPRD  T + RGFAFVR+ DKRDA+DA+D +DG  ++GRE+R + AR  RP
Sbjct:    1 MSSYGR-----GPPSIDGMVSLKVDNLTYRTTPEDLRRAFEKYGDVGDVYIPRDRFTRESRGFAFVRFYDKRDAEDAMDSMDGALLDGREVRCQMARYGRP 96
[Close]
BLAST of mRNA_P-littoralis_Contig161.50.1 vs. uniprot
Match: A0A7S3XQ99_HETAK (Hypothetical protein (Fragment) n=2 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3XQ99_HETAK)

HSP 1 Score: 124 bits (311), Expect = 3.280e-30
Identity = 59/102 (57.84%), Postives = 79/102 (77.45%), Query Frame = 0 
Query:    1 MSRY-GDPEPRGGPPNIDGMVTLKVDNIAYTCTVEELRESFETYGKLGDVYIPRDMRTGDPRGFAFVRYLDKRDADDAIDRLDGERMNGRELRIEYARKRRP 101
            MSR   D  P  GPP+I G+ TLKVDNI++ C +++LR+ FE YG +GDVYIPRD RT + RGF FVR+ DKRDA+DA+D +DG+R++GRELR+ +A + RP
Sbjct:   12 MSRLQSDYAPGQGPPDIKGLHTLKVDNISFRCQLDDLRDMFEKYGDIGDVYIPRDHRTQEGRGFGFVRFHDKRDAEDALDAMDGKRVDGRELRVAFAERDRP 113
[Close]
BLAST of mRNA_P-littoralis_Contig161.50.1 vs. uniprot
Match: T1J1U9_STRMM (RRM domain-containing protein n=1 Tax=Strigamia maritima TaxID=126957 RepID=T1J1U9_STRMM)

HSP 1 Score: 122 bits (305), Expect = 3.440e-30
Identity = 55/90 (61.11%), Postives = 73/90 (81.11%), Query Frame = 0 
Query:   12 GPPNIDGMVTLKVDNIAYTCTVEELRESFETYGKLGDVYIPRDMRTGDPRGFAFVRYLDKRDADDAIDRLDGERMNGRELRIEYARKRRP 101
            GPPNI+GM +LKVDN+ Y  T E+LR +FE YG++GDVYIPRD  T + RGFAFVR+ DKRDA+DA++ +DG+ ++GRELR++ AR  RP
Sbjct:    6 GPPNIEGMTSLKVDNLTYRTTPEDLRRAFEKYGEVGDVYIPRDRFTRESRGFAFVRFYDKRDAEDALEAMDGQMLDGRELRVQMARYGRP 95
[Close]
BLAST of mRNA_P-littoralis_Contig161.50.1 vs. uniprot
Match: UPI001B888B81 (serine/arginine-rich splicing factor 2-like n=1 Tax=Gigantopelta aegis TaxID=1735272 RepID=UPI001B888B81)

HSP 1 Score: 120 bits (302), Expect = 3.480e-30
Identity = 56/89 (62.92%), Postives = 70/89 (78.65%), Query Frame = 0 
Query:   13 PPNIDGMVTLKVDNIAYTCTVEELRESFETYGKLGDVYIPRDMRTGDPRGFAFVRYLDKRDADDAIDRLDGERMNGRELRIEYARKRRP 101
            PP +DGM +LKVDN+ Y  T+E+L+ SFE YG +GDVYIPRD  T + RGFAFVRY DKRDA+DAID +DG  M+GRE+R++ AR  RP
Sbjct:    7 PPEVDGMYSLKVDNLTYRTTIEDLKRSFEKYGDVGDVYIPRDRFTRESRGFAFVRYYDKRDAEDAIDCMDGAVMDGREIRVQMARYGRP 95
[Close]
BLAST of mRNA_P-littoralis_Contig161.50.1 vs. uniprot
Match: U5ESJ6_9DIPT (Putative serine/arginine rich splicing factor n=1 Tax=Corethrella appendiculata TaxID=1370023 RepID=U5ESJ6_9DIPT)

HSP 1 Score: 121 bits (304), Expect = 3.910e-30
Identity = 58/101 (57.43%), Postives = 74/101 (73.27%), Query Frame = 0 
Query:    1 MSRYGDPEPRGGPPNIDGMVTLKVDNIAYTCTVEELRESFETYGKLGDVYIPRDMRTGDPRGFAFVRYLDKRDADDAIDRLDGERMNGRELRIEYARKRRP 101
            MS YG P     PP IDGM++LKVDN+ Y  T E+LR  FE  G++GD+YIPRD  T + RGFAFVR+ DKRDA+DA+D +DG  ++GRELR++ AR  RP
Sbjct:    1 MSNYGRP-----PPRIDGMISLKVDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRHTRESRGFAFVRFYDKRDAEDALDAMDGRMLDGRELRVQMARYGRP 96
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig161.50.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KI74_9PHAE1.990e-4883.17RRM domain-containing protein n=1 Tax=Ectocarpus s... [more]
A0A6H5KLI3_9PHAE8.810e-4169.70RRM domain-containing protein n=2 Tax=Ectocarpus T... [more]
D8LGH4_ECTSI1.490e-3885.54Serine/arginine rich splicing factor, putative n=1... [more]
A0A835ZAC4_9STRA1.000e-3160.67RRM domain-containing protein n=1 Tax=Tribonema mi... [more]
A0A8J5KC64_HOMAM7.840e-3161.11Serine/arginine-rich splicing factor 2-like n=15 T... [more]
UPI0003593C352.340e-3059.41serine/arginine-rich splicing factor 2 n=1 Tax=Apl... [more]
A0A7S3XQ99_HETAK3.280e-3057.84Hypothetical protein (Fragment) n=2 Tax=Heterosigm... [more]
T1J1U9_STRMM3.440e-3061.11RRM domain-containing protein n=1 Tax=Strigamia ma... [more]
UPI001B888B813.480e-3062.92serine/arginine-rich splicing factor 2-like n=1 Ta... [more]
U5ESJ6_9DIPT3.910e-3057.43Putative serine/arginine rich splicing factor n=1 ... [more]

Pages

back to top
InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR000504RNA recognition motif domainSMARTSM00360rrm1_1coord: 21..94
e-value: 7.1E-22
score: 88.7
IPR000504RNA recognition motif domainPFAMPF00076RRM_1coord: 23..92
e-value: 2.3E-19
score: 69.0
IPR000504RNA recognition motif domainPROSITEPS50102RRMcoord: 20..98
score: 19.211941
IPR012677Nucleotide-binding alpha-beta plait domain superfamilyGENE3D3.30.70.330coord: 16..135
e-value: 4.3E-30
score: 106.6
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 215..255
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 92..111
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 263..281
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 185..204
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 160..184
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 144..159
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 119..281
NoneNo IPR availablePANTHERPTHR23147:SF17SERINE/ARGININE-RICH SPLICING FACTOR 2coord: 14..203
NoneNo IPR availablePANTHERPTHR23147SERINE/ARGININE RICH SPLICING FACTORcoord: 14..203
IPR035979RNA-binding domain superfamilySUPERFAMILY54928RNA-binding domain, RBDcoord: 13..130

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig161contigP-littoralis_Contig161:167031..189472 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Pylaiella littoralis U1_48 OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig161.50.1mRNA_P-littoralis_Contig161.50.1Pylaiella littoralis U1_48mRNAP-littoralis_Contig161 166978..189472 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_P-littoralis_Contig161.50.1 ID=prot_P-littoralis_Contig161.50.1|Name=mRNA_P-littoralis_Contig161.50.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=282bp
MSRYGDPEPRGGPPNIDGMVTLKVDNIAYTCTVEELRESFETYGKLGDVY
IPRDMRTGDPRGFAFVRYLDKRDADDAIDRLDGERMNGRELRIEYARKRR
PGGSGGGGGGGGGGSYGRGGGGYGGGYGGGYGGGGGGHYGGGGGRRDGGR
DDRGGGGRSRSPRRRSRSRSPPPRRRRSRSRSRSRSPRSPADNKERKHRR
TRSASPAEAAAPSHGSGGDRRRSRSGGRGGRRDDDDDGGRRGGGRDDDGG
RRGGGGEGGRDNGYGLDGRRGEGGGGDVRGI*
back to top
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR000504RRM_dom
IPR012677Nucleotide-bd_a/b_plait_sf
IPR035979RBD_domain_sf