prot_P-littoralis_Contig161.33.5 (polypeptide) Pylaiella littoralis U1_48

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_P-littoralis_Contig161.33.5
Unique Nameprot_P-littoralis_Contig161.33.5
Typepolypeptide
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Sequence length520
Homology
BLAST of mRNA_P-littoralis_Contig161.33.5 vs. uniprot
Match: A0A6H5K6S9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K6S9_9PHAE)

HSP 1 Score: 427 bits (1099), Expect = 1.970e-142
Identity = 293/521 (56.24%), Postives = 345/521 (66.22%), Query Frame = 0
Query:    4 PRSRQMNPTPSSSAAAPVCLVAGILLGSRCSSVQALVPSAAATAPSFRGFSLVKAPSTSSVSRGRANVRPRQTSKSSLFATAAEGGGAGDMDSSELYRDLRCRLEELRHSSTSDNSDGLTS-QEDVSDLGLVQQQEDIVGCGKGNCGGGGAAAVKVYSSQEMKQRYYEAFWRARNLHKESKFVGSSSGVQADDGSNTNSGGESSENVPPIAPSPEATAEVASRTTILTPMAMRMFRSLDSDPAAEPSGAN-----DDVQGLTQMYYLEEEAEQGAXXXXXXXXTAAVGVAPVAAYATASSHGSYSSEGAAGATVGVDASFSSDESSAAAADAVEMFAEPQGLTQVYFLDPEMEAEAAAALPVVPGRSFLRERLGVSGEVVQGLRQVELDHARLAMLAVLLSGVIGAGAGAGVDAALTTTHEGFAALAEVARTPWLDPYVAGGILAAKALSEGDWRIGKGAMAGWADKALSSVSNTGAKVLRFGSGNEIRRLAVEMEVKHGRLALGAVVCAMAQQGILTTVA 518
            PR+R+ + TP S A  P CLV G+LLG    +VQA VP+        RG S +     +    GRA VRPR      L AT   GG AGD+DSSELY D+R RLEELR SS+S +  G +  ++DVSD GL QQQ                   K YS+QEMKQRYYEAFWRARNLH+E+KF  +SSG + D  S+T +        PP  P PEA  E  SRTTIL+ MAM MF S  +                DVQGLTQMY+LE E E+G            +    VAA ATA +      + AA   V  +A F++ +  AA A+++   A+PQGLTQV+FLDPE EA AAAALPVVP RSFLRERLGV GE+VQ LRQVELDHARLAMLAVLLSGV+GAG        L   H+GF+ALA+VARTPWLDPYVAGGILAAKALSEGDWR+GKGAMAG AD+AL++VSNTGAKVLR GSGNE+RRLAVE+EVKHGR+ALGAVVCAMAQQG+LT+VA
Sbjct:    2 PRNRRPSTTPPSGAG-PACLVVGLLLGRSGRAVQAFVPT------HHRGVSSLLTRPFAPARGGRALVRPR-AGDMRLSATGGSGG-AGDIDSSELYADMRRRLEELRQSSSSRSDTGFSPIEDDVSDPGLFQQQNXXXXXXXXXX------XAKAYSAQEMKQRYYEAFWRARNLHREAKFE-ASSGAEDDYSSDTPA--------PPATPPPEA--EAGSRTTILSHMAMNMFLSRGAXXXXXXXXXXXXXXXSDVQGLTQMYHLELEEEEGV-----------LASTAVAAAATAEALPVRQPQHAA---VSTEAVFAAPDV-AAEAESMIPTAQPQGLTQVFFLDPEDEALAAAALPVVPERSFLRERLGVPGELVQDLRQVELDHARLAMLAVLLSGVVGAGXXX-XXGVLLNAHDGFSALADVARTPWLDPYVAGGILAAKALSEGDWRVGKGAMAGLADRALNAVSNTGAKVLRLGSGNELRRLAVEVEVKHGRMALGAVVCAMAQQGLLTSVA 480          
BLAST of mRNA_P-littoralis_Contig161.33.5 vs. uniprot
Match: D8LGH2_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LGH2_ECTSI)

HSP 1 Score: 389 bits (999), Expect = 1.390e-127
Identity = 282/487 (57.91%), Postives = 318/487 (65.30%), Query Frame = 0
Query:    4 PRSRQMNPTPSSSAAAPVCLVAGILLGSRCSSVQALVPSAAATAPSFRGFSLVKAPSTSSVSRGRANVRPRQTSKSSLFATAAEGGGAGDMDSSELYRDLRCRLEELRHSSTSDNSDGLTS-QEDVSDLGLVQQQEDIVGCGKGNCGGGGAAAVKVYSSQEMKQRYYEAFWRARNLHKESKFVGSSSGVQADDGSNTNSGGESSENVPPIAPSPEATAEVASRTTILTPMAMRMFRS----LDSDPAAEPSGANDDVQGLTQMYYLE-EEAEQGAXXXXXXXXTAAVGVAPVAAYATASSHGSYSSEGAAGATVGVDASFSSDESSAAAADAVEMFAEPQGLTQVYFLDPEMEAEAAAALPVVPGRSFLRERLGVSGEVVQGLRQVELDHARLAMLAVLLSGVIGAGAGAGVDAALTTTHEGFAALAEVARTPWLDPYVAGGILAAKALSEGDWRIGKGAMAGWADKALSSVSNTGAKVLRFGSGNE 484
            PRSR  N TPS   A P CLV G+LL     SVQA VP+        RG S +  PS +    GRA VRPR      L AT   GG AGD+DSSELY D+R RLEELR SS+S +  GL+  ++DVSDLGL QQ                    K YS+QEMKQRYYEAFWRARNLHKE+KF GSS G++ D  S+T +        PP  P PEA  E  SRTTIL+ MAM MF S     ++D        + DVQGLTQMYYLE EE     XXXXXXXX  A    PV        H          A VG +A F++ +  AAAA+++   AEPQGLTQV+FLDP+ EA AAAALPVVPGRSFLRERLGV GEVVQ LRQVELDHARLAMLAVLLSG +GA         L   H+GF+ALA+VARTPWLDPYVAGGILAAKALSEGDWRIGKGAMAGWAD+ALS+VSNTGAKVLR GSGNE
Sbjct:    2 PRSRWPNTTPSG--AGPACLVLGLLLSRSGRSVQAFVPA------HHRGVSSLTPPS-APARGGRALVRPR-AGDMRLSATGGSGG-AGDIDSSELYADMRRRLEELRQSSSSSSDTGLSPIEDDVSDLGLFQQXXXXXXXXXXXX------XAKAYSAQEMKQRYYEAFWRARNLHKEAKFEGSS-GIEDDYSSDTPA--------PPATPPPEA--EAGSRTTILSHMAMDMFLSRGAAAEADDXXXXXXXSSDVQGLTQMYYLELEEXXXXXXXXXXXXXXTAAEPLPV----RQPQH----------AAVGAEAVFAASDV-AAAAESMIPTAEPQGLTQVFFLDPKDEALAAAALPVVPGRSFLRERLGVPGEVVQDLRQVELDHARLAMLAVLLSGAVGAXXXXXXXV-LLKAHDGFSALADVARTPWLDPYVAGGILAAKALSEGDWRIGKGAMAGWADRALSAVSNTGAKVLRLGSGNE 444          
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig161.33.5 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5K6S9_9PHAE1.970e-14256.24Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LGH2_ECTSI1.390e-12757.91Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR022796Chlorophyll A-B binding proteinPFAMPF00504Chloroa_b-bindcoord: 373..511
e-value: 1.9E-6
score: 28.5
NoneNo IPR availableGENE3D1.10.3460.10Chlorophyll a/b binding protein domaincoord: 360..519
e-value: 1.1E-8
score: 37.1
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 239..258
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 184..225
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 184..208
NoneNo IPR availableSUPERFAMILY103511Chlorophyll a-b binding proteincoord: 377..513

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig161contigP-littoralis_Contig161:96340..101325 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Pylaiella littoralis U1_48 OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig161.33.5mRNA_P-littoralis_Contig161.33.5Pylaiella littoralis U1_48mRNAP-littoralis_Contig161 94837..105965 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_P-littoralis_Contig161.33.5 ID=prot_P-littoralis_Contig161.33.5|Name=mRNA_P-littoralis_Contig161.33.5|organism=Pylaiella littoralis U1_48|type=polypeptide|length=520bp
MPQPRSRQMNPTPSSSAAAPVCLVAGILLGSRCSSVQALVPSAAATAPSF
RGFSLVKAPSTSSVSRGRANVRPRQTSKSSLFATAAEGGGAGDMDSSELY
RDLRCRLEELRHSSTSDNSDGLTSQEDVSDLGLVQQQEDIVGCGKGNCGG
GGAAAVKVYSSQEMKQRYYEAFWRARNLHKESKFVGSSSGVQADDGSNTN
SGGESSENVPPIAPSPEATAEVASRTTILTPMAMRMFRSLDSDPAAEPSG
ANDDVQGLTQMYYLEEEAEQGAAAAAVASSTAAVGVAPVAAYATASSHGS
YSSEGAAGATVGVDASFSSDESSAAAADAVEMFAEPQGLTQVYFLDPEME
AEAAAALPVVPGRSFLRERLGVSGEVVQGLRQVELDHARLAMLAVLLSGV
IGAGAGAGVDAALTTTHEGFAALAEVARTPWLDPYVAGGILAAKALSEGD
WRIGKGAMAGWADKALSSVSNTGAKVLRFGSGNEIRRLAVEMEVKHGRLA
LGAVVCAMAQQGILTTVAV*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR022796Chloroa_b-bind