mRNA_P-littoralis_Contig1.90.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig1.90.1
Unique NamemRNA_P-littoralis_Contig1.90.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
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BLAST of mRNA_P-littoralis_Contig1.90.1 vs. uniprot
Match: D7G5U8_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G5U8_ECTSI)

HSP 1 Score: 106 bits (264), Expect = 2.710e-23
Identity = 56/138 (40.58%), Postives = 83/138 (60.14%), Query Frame = 3 
Query:    3 MSPLVTTALTVLRNESNTENWFTFSQHLNALVRKSFAFGLLDDRELLDQLQFRGDDMVEQGGHPAAVLRVFSEMLPNKRHISRETTFWDRGKLRDINKLHS----ASTAVSGAAHGYPGPSHLAAHHAARVAASSTVP 404
            M+PL TTALT LR E   E+W++F  H++A++ K    GL+  R +LD   +RG+DM+ Q G P  V  +F++++PN R+ISRETT  DR +L+ I+ +      A+T  +    GY G    AA  A+ +AA  T P
Sbjct:  181 MNPLPTTALTPLRTEKGKEDWYSFKPHVDAIIAKGVTLGLMTWRSMLDDFVYRGNDMLLQFGVPEKVFGIFTDLMPNARNISRETTLRDRSRLKAIDTISGGWKLAATLATAHLSGYAGAYQQAASQASTIAAGITAP 318
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig1.90.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7G5U8_ECTSI2.710e-2340.58Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig1contigP-littoralis_Contig1:559080..559806 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size727
Hectar predicted targeting categoryother localisation
Exons1
Cds size654
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789312.587051-UTR-P-littoralis_Contig1:559079..5590811680789312.587051-UTR-P-littoralis_Contig1:559079..559081Pylaiella littoralis U1_48UTRP-littoralis_Contig1 559080..559081 +
1680789312.6107156-UTR-P-littoralis_Contig1:559735..5598061680789312.6107156-UTR-P-littoralis_Contig1:559735..559806Pylaiella littoralis U1_48UTRP-littoralis_Contig1 559736..559806 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789312.602144-CDS-P-littoralis_Contig1:559081..5597351680789312.602144-CDS-P-littoralis_Contig1:559081..559735Pylaiella littoralis U1_48CDSP-littoralis_Contig1 559082..559735 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig1.90.1prot_P-littoralis_Contig1.90.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig1 559082..559735 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig1.90.1

>prot_P-littoralis_Contig1.90.1 ID=prot_P-littoralis_Contig1.90.1|Name=mRNA_P-littoralis_Contig1.90.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=218bp
MSPLVTTALTVLRNESNTENWFTFSQHLNALVRKSFAFGLLDDRELLDQL
QFRGDDMVEQGGHPAAVLRVFSEMLPNKRHISRETTFWDRGKLRDINKLH
SASTAVSGAAHGYPGPSHLAAHHAARVAASSTVPQPRGRGSSVRGGGGRY
SSAGTSVSLPFTPSILPPPPRADALPIKEALPAVTGGVHPLHPRPLPTLR
PPTGKGTRTNSGRTSRP*
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mRNA from alignment at P-littoralis_Contig1:559080..559806+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig1.90.1 ID=mRNA_P-littoralis_Contig1.90.1|Name=mRNA_P-littoralis_Contig1.90.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=727bp|location=Sequence derived from alignment at P-littoralis_Contig1:559080..559806+ (Pylaiella littoralis U1_48)
AGATGAGTCCGCTCGTCACCACGGCGCTCACCGTCCTTCGGAACGAGTCG
AACACGGAAAATTGGTTTACCTTCTCCCAACACCTCAACGCCCTCGTCAG
GAAATCCTTTGCATTTGGCCTCCTCGACGATCGTGAACTCCTGGACCAAC
TCCAGTTTCGTGGAGACGACATGGTCGAACAAGGAGGACACCCAGCCGCC
GTTTTGCGCGTCTTCTCCGAGATGCTCCCGAACAAACGCCATATCTCGCG
GGAGACCACCTTTTGGGACCGCGGAAAACTCCGCGACATCAACAAGCTCC
ACAGCGCGTCAACCGCAGTGTCCGGAGCAGCGCACGGGTATCCTGGCCCG
TCCCATTTAGCCGCTCACCACGCCGCACGTGTGGCGGCGTCGTCCACCGT
TCCACAGCCGCgGGGTAGGGGTTCGAGCGTTCGCGGTGGGGGAGGCCGCT
ACTCTTCTGCAGGGACTTCGGTCTCCCTGCCGTTTACTCCGTCTATTTTG
CCGCCTCCGCCACGGGCCGACGCCCTGCCCATCAAGGAGGCTCTGCCCGC
GGTAACGGGCGGGGTGCATCCGCTCCACCCCCGCCCCCTTCCAACGCTGC
GGCCGCCGACCGGCAAAGGTACACGGACAAACTCCGGGAGAACCAGCAGG
CCATGACTTCTTCGCCCAACGCCGACCGCTGCCACAACTGCGCCGATAAG
GGTCGCGTAGACCTACACCACCACAAA
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Coding sequence (CDS) from alignment at P-littoralis_Contig1:559080..559806+

>mRNA_P-littoralis_Contig1.90.1 ID=mRNA_P-littoralis_Contig1.90.1|Name=mRNA_P-littoralis_Contig1.90.1|organism=Pylaiella littoralis U1_48|type=CDS|length=654bp|location=Sequence derived from alignment at P-littoralis_Contig1:559080..559806+ (Pylaiella littoralis U1_48)
ATGAGTCCGCTCGTCACCACGGCGCTCACCGTCCTTCGGAACGAGTCGAA
CACGGAAAATTGGTTTACCTTCTCCCAACACCTCAACGCCCTCGTCAGGA
AATCCTTTGCATTTGGCCTCCTCGACGATCGTGAACTCCTGGACCAACTC
CAGTTTCGTGGAGACGACATGGTCGAACAAGGAGGACACCCAGCCGCCGT
TTTGCGCGTCTTCTCCGAGATGCTCCCGAACAAACGCCATATCTCGCGGG
AGACCACCTTTTGGGACCGCGGAAAACTCCGCGACATCAACAAGCTCCAC
AGCGCGTCAACCGCAGTGTCCGGAGCAGCGCACGGGTATCCTGGCCCGTC
CCATTTAGCCGCTCACCACGCCGCACGTGTGGCGGCGTCGTCCACCGTTC
CACAGCCGCgGGGTAGGGGTTCGAGCGTTCGCGGTGGGGGAGGCCGCTAC
TCTTCTGCAGGGACTTCGGTCTCCCTGCCGTTTACTCCGTCTATTTTGCC
GCCTCCGCCACGGGCCGACGCCCTGCCCATCAAGGAGGCTCTGCCCGCGG
TAACGGGCGGGGTGCATCCGCTCCACCCCCGCCCCCTTCCAACGCTGCGG
CCGCCGACCGGCAAAGGTACACGGACAAACTCCGGGAGAACCAGCAGGCC
ATGA
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