mRNA_P-littoralis_Contig1606.1.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig1606.1.1
Unique NamemRNA_P-littoralis_Contig1606.1.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
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BLAST of mRNA_P-littoralis_Contig1606.1.1 vs. uniprot
Match: A0A6H5JK03_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JK03_9PHAE)

HSP 1 Score: 97.4 bits (241), Expect = 2.570e-24
Identity = 42/62 (67.74%), Postives = 46/62 (74.19%), Query Frame = -1 
Query:  118 RPFPPIPLRHHKLIDGFECLRRHFSLCVRCAVVDGSRPYHWHARASSTIHDNNSCLRRCWRR 303
            RPF PIPLRHHKL+D  +CLRRH+ LCV   +V  SRPYHWH  ASSTIH    CL RCWRR
Sbjct:   24 RPFSPIPLRHHKLVDSLQCLRRHYVLCVVRRIVGRSRPYHWHTAASSTIHKT-LCLSRCWRR 84
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BLAST of mRNA_P-littoralis_Contig1606.1.1 vs. uniprot
Match: A0A6H5KXE3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KXE3_9PHAE)

HSP 1 Score: 88.2 bits (217), Expect = 5.420e-21
Identity = 38/57 (66.67%), Postives = 43/57 (75.44%), Query Frame = -1 
Query:  118 IPLRHHKLIDGFECLRRHFSLCVRCAVVDGSRPYHWHARASSTIHDNNSCLRRCWRR 288
            +PLRH KL+D  +CLRRH+ LCV   +V  SRPYHWH  ASSTIH NN CL RCWRR
Sbjct:    1 MPLRHRKLVDSLQCLRRHYVLCVVRRIVGRSRPYHWHTAASSTIH-NNLCLSRCWRR 56
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BLAST of mRNA_P-littoralis_Contig1606.1.1 vs. uniprot
Match: A0A6H5JMA1_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JMA1_9PHAE)

HSP 1 Score: 80.9 bits (198), Expect = 3.050e-16
Identity = 37/57 (64.91%), Postives = 48/57 (84.21%), Query Frame = 1 
Query:  172 TGVPVIGPAPIYDSATNTEREVPAETLKAIDEFVVPEGYRREGTREASFLYSLGVYV 342
            + VPVI PAP Y++  +TE  VPA+TL+A+DEFVVP+GYRRE  RE++F+YSLGVYV
Sbjct:   44 SSVPVIRPAPAYNTTDDTEYVVPADTLQAVDEFVVPQGYRRERVRESTFMYSLGVYV 100
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BLAST of mRNA_P-littoralis_Contig1606.1.1 vs. uniprot
Match: A0A6H5JYQ2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JYQ2_9PHAE)

HSP 1 Score: 54.7 bits (130), Expect = 2.690e-6
Identity = 27/55 (49.09%), Postives = 37/55 (67.27%), Query Frame = 1 
Query:  178 VPVIGPAPIYDSATNTEREVPAETLKAIDEFVVPEGYRREGTREASFLYSLGVYV 342
            VPVI  A +Y+        V    +KA+D+F VPEGY R+G+RE S++YSLGVY+
Sbjct:   60 VPVITAAAVYNK-DGEPHAVNTAVVKAVDDFKVPEGYVRKGSREKSYMYSLGVYI 113
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig1606.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
A0A6H5JK03_9PHAE2.570e-2467.74Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KXE3_9PHAE5.420e-2166.67Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JMA1_9PHAE3.050e-1664.91Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]
A0A6H5JYQ2_9PHAE2.690e-649.09Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig1606contigP-littoralis_Contig1606:42..383 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size342
Hectar predicted targeting categoryother localisation
Exons1
Cds size330
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789776.170059-CDS-P-littoralis_Contig1606:41..3711680789776.170059-CDS-P-littoralis_Contig1606:41..371Pylaiella littoralis U1_48CDSP-littoralis_Contig1606 42..371 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789776.183948-UTR-P-littoralis_Contig1606:371..3831680789776.183948-UTR-P-littoralis_Contig1606:371..383Pylaiella littoralis U1_48UTRP-littoralis_Contig1606 372..383 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig1606.1.1prot_P-littoralis_Contig1606.1.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig1606 42..371 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig1606.1.1

>prot_P-littoralis_Contig1606.1.1 ID=prot_P-littoralis_Contig1606.1.1|Name=mRNA_P-littoralis_Contig1606.1.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=110bp
MSAASTPANHDAPAAGGGGNNEAPAAGEQSSSSPVPAPAPSEAGVVVVDG
GGGTGVPVIGPAPIYDSATNTEREVPAETLKAIDEFVVPEGYRREGTREA
SFLYSLGVYV
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mRNA from alignment at P-littoralis_Contig1606:42..383-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig1606.1.1 ID=mRNA_P-littoralis_Contig1606.1.1|Name=mRNA_P-littoralis_Contig1606.1.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=342bp|location=Sequence derived from alignment at P-littoralis_Contig1606:42..383- (Pylaiella littoralis U1_48)
GCCAGCCGCCTCATGAGCGCCGCATCAACCCCCGCCAACCACGATGCCCC
CGCTGCTGGCGGGGGGGGCAACAACGAGGCACCCGCCGCTGGCGAACAAA
GCTCATCATCGCCAGTGCCGGCGCCAGCACCTTCGGAGGCAGGAGTTGTT
GTCGTGGATGGTGGAGGAGGCACGGGCGTGCCAGTGATAGGGCCTGCTCC
CATCTACGACAGCGCAACGAACACAGAGAGAGAAGTGCCGGCGGAGACAC
TCAAAGCCATCGATGAGTTTGTGGTGCCGGAGGGGTATCGGAGGGAAGGG
ACGCGTGAGGCCTCTTTCTTGTACTCGCTCGGTGTGTACGTT
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Coding sequence (CDS) from alignment at P-littoralis_Contig1606:42..383-

>mRNA_P-littoralis_Contig1606.1.1 ID=mRNA_P-littoralis_Contig1606.1.1|Name=mRNA_P-littoralis_Contig1606.1.1|organism=Pylaiella littoralis U1_48|type=CDS|length=330bp|location=Sequence derived from alignment at P-littoralis_Contig1606:42..383- (Pylaiella littoralis U1_48)
ATGAGCGCCGCATCAACCCCCGCCAACCACGATGCCCCCGCTGCTGGCGG
GGGGGGCAACAACGAGGCACCCGCCGCTGGCGAACAAAGCTCATCATCGC
CAGTGCCGGCGCCAGCACCTTCGGAGGCAGGAGTTGTTGTCGTGGATGGT
GGAGGAGGCACGGGCGTGCCAGTGATAGGGCCTGCTCCCATCTACGACAG
CGCAACGAACACAGAGAGAGAAGTGCCGGCGGAGACACTCAAAGCCATCG
ATGAGTTTGTGGTGCCGGAGGGGTATCGGAGGGAAGGGACGCGTGAGGCC
TCTTTCTTGTACTCGCTCGGTGTGTACGTT
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