mRNA_P-littoralis_Contig1603.2.2 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig1603.2.2
Unique NamemRNA_P-littoralis_Contig1603.2.2
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
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BLAST of mRNA_P-littoralis_Contig1603.2.2 vs. uniprot
Match: A0A6H5JJS4_9PHAE (SWIM-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JJS4_9PHAE)

HSP 1 Score: 55.5 bits (132), Expect = 2.450e-7
Identity = 28/66 (42.42%), Postives = 40/66 (60.61%), Query Frame = 1 
Query:    1 CSFEKVFGSVRGMLPATA-PGRNTPNLPRLDRYATALIPERLRHIWEAWFVETDGNCLWRALAKAL 195
            C++ KVFG+  G++P  A PG+        D  AT ++   LR  + A +VE DGNC WR++AKAL
Sbjct:   60 CTWPKVFGTPEGVVPTVARPGKGQE---MYDPKATMILTPELRKTFVALWVEGDGNCFWRSMAKAL 122
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig1603.2.2 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5JJS4_9PHAE2.450e-742.42SWIM-type domain-containing protein n=1 Tax=Ectoca... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig1603contigP-littoralis_Contig1603:1556..2278 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size197
Hectar predicted targeting categoryother localisation
Exons2
Cds size195
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789776.0398142-CDS-P-littoralis_Contig1603:1555..16271680789776.0398142-CDS-P-littoralis_Contig1603:1555..1627Pylaiella littoralis U1_48CDSP-littoralis_Contig1603 1556..1627 +
1680789776.0514271-CDS-P-littoralis_Contig1603:2154..22771680789776.0514271-CDS-P-littoralis_Contig1603:2154..2277Pylaiella littoralis U1_48CDSP-littoralis_Contig1603 2155..2277 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig1603.2.2prot_P-littoralis_Contig1603.2.2Pylaiella littoralis U1_48polypeptideP-littoralis_Contig1603 1556..2277 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig1603.2.2

>prot_P-littoralis_Contig1603.2.2 ID=prot_P-littoralis_Contig1603.2.2|Name=mRNA_P-littoralis_Contig1603.2.2|organism=Pylaiella littoralis U1_48|type=polypeptide|length=65bp
CSFEKVFGSVRGMLPATAPGRNTPNLPRLDRYATALIPERLRHIWEAWFV
ETDGNCLWRALAKAL
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mRNA from alignment at P-littoralis_Contig1603:1556..2278+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig1603.2.2 ID=mRNA_P-littoralis_Contig1603.2.2|Name=mRNA_P-littoralis_Contig1603.2.2|organism=Pylaiella littoralis U1_48|type=mRNA|length=723bp|location=Sequence derived from alignment at P-littoralis_Contig1603:1556..2278+ (Pylaiella littoralis U1_48)
TGTTCGTTTGAGAAGGTCTTCGGCTCTGTCCGTGGGATGCTACCGGCCAC
CGCACCCGGCAGGAATACGCCGGTAAGCCAATCGTTGCAACTGTGCTATC
GTAAACTCTGTTGGTGTATTTTTACGATTCCGCTCGTTTAAAGGCCACGA
GGCTGGATTTGGTTGGTTGATTGAGCTGGGTTGATTTGGTTGAGTTGGTT
AGAGGGTTAAATGAAATTGGGTTTGTACAGGAGTGGCGTTGCGCCAAATA
CGAAACGGCTTGAATATGTTACGTTAGATTGAGTCAAGCGTGTAAATATC
ACGGAGCGGGCGCCCTTCCCAGCGTGGCCATCAGACATTGTGTTCGCTGT
TGCCAAGGTGCTAGTAACTTAAAATGAACCCCACCGCGTAGCGCGAATAA
GAACGGTGTCAGCGGCAACTGTTGTAATTCGTGGCTTTGTGTAGACCGCC
TACCTGTTCGATAGAATCAATTTATTGGGAATGATTATTCCATGTTCTGG
GAGGCATATTCGTACAACAGGATTTTGTCGCGAGGCAGAGCGTTTCGCTG
AACCTTTTCTGCCCCTGCCTCCGAACCCCTGCCTCCGAACTGGATCCAGA
ATCTACCACGGTTGGACCGGTACGCAACGGCGCTTATCCCAGAACGGCTG
CGCCACATTTGGGAAGCGTGGTTTGTCGAAACCGACGGAAACTGCTTGTG
GCGTGCCCTCGCCAAGGCCTTGT
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Coding sequence (CDS) from alignment at P-littoralis_Contig1603:1556..2278+

>mRNA_P-littoralis_Contig1603.2.2 ID=mRNA_P-littoralis_Contig1603.2.2|Name=mRNA_P-littoralis_Contig1603.2.2|organism=Pylaiella littoralis U1_48|type=CDS|length=195bp|location=Sequence derived from alignment at P-littoralis_Contig1603:1556..2278+ (Pylaiella littoralis U1_48)
TGTTCGTTTGAGAAGGTCTTCGGCTCTGTCCGTGGGATGCTACCGGCCAC
CGCACCCGGCAGGAATACGCCGAATCTACCACGGTTGGACCGGTACGCAA
CGGCGCTTATCCCAGAACGGCTGCGCCACATTTGGGAAGCGTGGTTTGTC
GAAACCGACGGAAACTGCTTGTGGCGTGCCCTCGCCAAGGCCTTG
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