mRNA_P-littoralis_Contig160.87.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig160.87.1
Unique NamemRNA_P-littoralis_Contig160.87.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
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BLAST of mRNA_P-littoralis_Contig160.87.1 vs. uniprot
Match: A0A6H5JAY4_9PHAE (C3H1-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JAY4_9PHAE)

HSP 1 Score: 70.5 bits (171), Expect = 1.740e-12
Identity = 38/72 (52.78%), Postives = 48/72 (66.67%), Query Frame = 1 
Query:    1 IIHDLTYQPSVAAR-SVNADTDFASAPEVKLGKVLRAIVWRILWLRSTFGTSARIVLSKIDVTDAFRQVSVE 213
            IIHDLT+   V  R SVN DTDF  APE  LG VL  I+ R+L+LR   G S  I++ +IDV +AFRQ+ V+
Sbjct:  732 IIHDLTFTSGVPIRTSVNHDTDFDQAPECLLGHVLSDILKRVLYLRQVHGVSLEILICRIDVKEAFRQIPVD 803
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BLAST of mRNA_P-littoralis_Contig160.87.1 vs. uniprot
Match: A0A836CKZ7_9STRA (Uncharacterized protein n=2 Tax=Tribonema minus TaxID=303371 RepID=A0A836CKZ7_9STRA)

HSP 1 Score: 47.0 bits (110), Expect = 8.390e-5
Identity = 27/71 (38.03%), Postives = 44/71 (61.97%), Query Frame = 1 
Query:    1 IIHDLTYQPSVAARSVNADTDFASAPEVKLGKVLRAIVWRILWLRSTFGTSARIVLSKIDVTDAFRQVSVE 213
            ++HDL+    +   SVN  T F  AP V+ G +  A+++RI  LR  +    RI++SK+DV  AFRQ++++
Sbjct:   24 VVHDLS--ALLHGESVNNTTVFEEAPVVECGHIFEAMLYRIWSLRQAWPRK-RILISKMDVKSAFRQLALD 91
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig160.87.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5JAY4_9PHAE1.740e-1252.78C3H1-type domain-containing protein n=1 Tax=Ectoca... [more]
A0A836CKZ7_9STRA8.390e-538.03Uncharacterized protein n=2 Tax=Tribonema minus Ta... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig160contigP-littoralis_Contig160:478173..478391 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size221
Hectar predicted targeting categoryother localisation
Exons1
Cds size219
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789775.971936-CDS-P-littoralis_Contig160:478172..4783911680789775.971936-CDS-P-littoralis_Contig160:478172..478391Pylaiella littoralis U1_48CDSP-littoralis_Contig160 478173..478391 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig160.87.1prot_P-littoralis_Contig160.87.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig160 478173..478391 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig160.87.1

>prot_P-littoralis_Contig160.87.1 ID=prot_P-littoralis_Contig160.87.1|Name=mRNA_P-littoralis_Contig160.87.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=73bp
IIHDLTYQPSVAARSVNADTDFASAPEVKLGKVLRAIVWRILWLRSTFGT
SARIVLSKIDVTDAFRQVSVEWT
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mRNA from alignment at P-littoralis_Contig160:478173..478391-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig160.87.1 ID=mRNA_P-littoralis_Contig160.87.1|Name=mRNA_P-littoralis_Contig160.87.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=219bp|location=Sequence derived from alignment at P-littoralis_Contig160:478173..478391- (Pylaiella littoralis U1_48)
ATCATACACGACCTCACATACCAGCCTTCTGTAGCGGCACGTAGTGTTAA
TGCCGACACCGATTTCGCGTCGGCCCCGGAAGTCAAACTTGGAAAGGTAC
TGCGTGCTATTGTTTGGCGTATTCTTTGGCTGCGATCCACTTTCGGTACC
TCAGCGCGCATTGTGTTGAGCAAAATCGATGTGACTGACGCCTTTCGTCA
GGTGTCCGTCGAGTGGACG
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Coding sequence (CDS) from alignment at P-littoralis_Contig160:478173..478391-

>mRNA_P-littoralis_Contig160.87.1 ID=mRNA_P-littoralis_Contig160.87.1|Name=mRNA_P-littoralis_Contig160.87.1|organism=Pylaiella littoralis U1_48|type=CDS|length=219bp|location=Sequence derived from alignment at P-littoralis_Contig160:478173..478391- (Pylaiella littoralis U1_48)
ATCATACACGACCTCACATACCAGCCTTCTGTAGCGGCACGTAGTGTTAA
TGCCGACACCGATTTCGCGTCGGCCCCGGAAGTCAAACTTGGAAAGGTAC
TGCGTGCTATTGTTTGGCGTATTCTTTGGCTGCGATCCACTTTCGGTACC
TCAGCGCGCATTGTGTTGAGCAAAATCGATGTGACTGACGCCTTTCGTCA
GGTGTCCGTCGAGTGGACG
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