mRNA_P-littoralis_Contig160.51.1 (mRNA) Pylaiella littoralis U1_48
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Overview
Homology
BLAST of mRNA_P-littoralis_Contig160.51.1 vs. uniprot
Match: D8LHU0_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LHU0_ECTSI) HSP 1 Score: 1194 bits (3088), Expect = 0.000e+0 Identity = 667/943 (70.73%), Postives = 770/943 (81.65%), Query Frame = 2
Query: 188 MSPSTLALTLCVLHGAATGFVLLPASGPAASSGCLWVPRSTVGPASTSAASATT-PTRALAGRAVAXXXXXXXXXXXXXXXXXXXXXXXXX-----DGGFHAATRRRSRAGGIKTRKSRRVDAYLAGRAAKVVLFSSPEGREGTLEQG--EDEGDAVELSSAGPPAXXXXXXXXXXXXG--PDPAKDLAEVVMQGIFEWNAKHNVADAERPTVDLEAVVQETYDEAVRLYKYYERLNEKIYQKEQEEAARAREAEGLPEVLDAEMADDPETGAPYRPPPVLTGIFEPSFEDDDETPVNMEEPDARTVALARRQEYLYGFKASDLPQKLLDEVEAAGEETRKGAYVSRLLAGISSTPYQDNLHLARQLRWAARVLVPRDNSEGAVLSKLVSDEELSAANVLAVKTLVNVTQAYPGTSRSSAGGWCLWLLKTLRNRDEDAVGHMAMDDEAVGLFFDLRSQDEKDDERMRVGARMFRKALETEVFKMEEGGLMINTTSEQLGEYAAGMGQHILCLAGEMIPSHDRAFIVLKETTAQVFDEMASLAYDKVVIDMGNEISPRSRAMADACPMSAAEVLKAIAQLAFHIAHPLRYLQTGFSGMTTEILQDMMKELMLPNTEFQENKPFYEIYAREHVISELMDPSPEGTLKMSSRLLRRVMDLYKSDAVASNIHVLSEELSQRLFDADDSLPDIRRSWDNLMWTLEIDDDDYESEKQMKAAMEGVLASLVEKLINAGMEAPSDETAAMCETLALDKESMQKAFSLVSRDIFEKTLLKMMRSQETAADGSRTVLFRSDLLTDEELQELKTTAQKVGVPEAMALEVVAKELKVSVTNLVKRAGKKIRNNDAKEGAGIIGDASRLLGGLCTQVAGAFGATDVTKTLSIAGTLASLDEYWSSELCFKMVDAVRDPEGAKAEMGIPGALTSAPEPQWEEDAQRILEILGLKGKR 2986
MS ++ L VLH AA +L PA+GP ASS WV RST G +++SA++ TT PT L G+A A DG FHA+ RRS G R+ L G + + TLEQ ED V+ SS GP XXXXXXXXXXXX PDPAKDLAEVVMQ IFEWN K++V DA+RPTVDL+AVV+ETY+EA+RLY+YY+++NE+I ++E+EEA +AREAEGLP V+DA++A+D E+G PYRPP +T IFEPSFEDD+E PVN+EEPDARTVALARRQEYLYGF+ SDLP+++LDEVEAAG ETRK AYV RLLAGISS+PYQDNLHLARQLRWAA VL+PRDN+EG LS+ V+DEEL+AANVLAVKTLVNVT+AYPG SRS+ GGWCLWLLKTLRNRDED VGH+A+DDE+VG+FFDLRSQ EKD +RM+VG+RMFRKALETEVFKME GGLM NTT +QLGEYAAGMGQHILCLAGEMIPSHDR F +LK+TT +V D+MA++AYDKVV+ MGNE+SP SR +A++CPM+AAEVLKAIAQLAFHIA PLRY QTGFSG+TT ILQD MKE+ L NT FQENK FYE+YAR+HVISEL +PSP GTLKMSSRLLRRVMD+YK+DAV+SNI VLSEELSQRLFDADDSLPDI+ SWDNLMW LEIDD DYESEKQMKAAM+GVLASLVEKLI AGME PS +TA MC TL LD E+M+KAFSLVS DIFE++LLKMMRSQ TAADG+RTVLFRSD LT EEL+EL TA +VGV MALEVVAKEL+VS+ N+V RAG+ +RNN AKEGA IIGDA+ LL GLCTQ+AGAFGATD+T+TLSIAGTLASLDEYW+SELCFKMVDAVRDPEGA+AE+GIPGALTS PEPQWEE+AQRILEILGLKG+R
Sbjct: 1 MSMLQWSVLLGVLHKAAAFVLLPPAAGPTASS--TWV-RSTCGSSASSASAWTTYPTCMLRGQAAAVAGAARASPPDRPASTANRRRRPTTLAAGADGCFHASPGRRSGGSGEGGRRK------LGGATGRTSTMR----KSSTLEQDGVEDNEGVVDFSSVGPXXXXXXXXXXXXXXXGEPDPAKDLAEVVMQAIFEWNMKNDVVDAQRPTVDLDAVVEETYEEAMRLYEYYDQMNEEIAKQEREEAEKAREAEGLPAVVDADLAEDEESGTPYRPPAAVTSIFEPSFEDDEEMPVNLEEPDARTVALARRQEYLYGFRPSDLPREVLDEVEAAGPETRKLAYV-RLLAGISSSPYQDNLHLARQLRWAAGVLMPRDNAEGGALSQSVTDEELTAANVLAVKTLVNVTEAYPGASRSATGGWCLWLLKTLRNRDEDEVGHLALDDESVGMFFDLRSQGEKDSKRMKVGSRMFRKALETEVFKMEAGGLMANTTPDQLGEYAAGMGQHILCLAGEMIPSHDRPFNILKDTTREVLDDMATMAYDKVVMSMGNEVSPHSRMVAESCPMTAAEVLKAIAQLAFHIAQPLRYFQTGFSGITTVILQDTMKEMQLLNTAFQENKEFYEVYARDHVISELTNPSPAGTLKMSSRLLRRVMDMYKNDAVSSNILVLSEELSQRLFDADDSLPDIKLSWDNLMWNLEIDDGDYESEKQMKAAMDGVLASLVEKLIEAGMEQPSAKTAQMCATLGLDDEAMRKAFSLVSGDIFEQSLLKMMRSQGTAADGTRTVLFRSDPLTKEELEELMATAVRVGVSGPMALEVVAKELQVSLKNMVVRAGQSMRNNVAKEGAKIIGDANILLDGLCTQLAGAFGATDITETLSIAGTLASLDEYWTSELCFKMVDAVRDPEGARAELGIPGALTSDPEPQWEEEAQRILEILGLKGRR 929
BLAST of mRNA_P-littoralis_Contig160.51.1 vs. uniprot
Match: A0A6H5JNG6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JNG6_9PHAE) HSP 1 Score: 142 bits (357), Expect = 2.240e-34 Identity = 128/267 (47.94%), Postives = 158/267 (59.18%), Query Frame = 2
Query: 188 MSPSTLALTLCVLHGAATGFVLLPASGPAASSGCLWVPRSTVGPASTSAASATT-PTRALAGRAVAXXXXXXXXXXXXXXXXXXXXXXXXXDGGFHAATRRRSRAGGIKTRKSRRVDAYLAGRAAKVVLFSSPEGREGTLEQG--EDEGDAVELSSAGPPAXXXXXXXXXXXXG--PDPAKDLAEVVMQGIFEWNAKHNVADAERPTVDLEAVVQETYDEAVRLYKYYERLNEKIYQKEQEEAARAREAEGLPEVLDAEMADDPETG 973
MS ++ L VLH AA +L PA+GP ASS WV RST G +++S ++ TT PT + G+A A A R S GG R S + SS TLEQ ED AV+ SS GP XXXXXXXXXXXX PDPAKDLAEVVMQ IFEWN K++V DAERPTVDL+AVV+ETY EA+RLY+YY+++NE+I ++E+EEA +AREAEGLP V+DAE+A+D E G
Sbjct: 1 MSMLQWSVLLGVLHKAAAFVLLPPAAGPTASSS--WV-RSTCGSSASSTSAWTTYPTCMVRGQAAAV-----------------------------AGAARASPPGGATGRTS-------------TMRKSS------TLEQDGVEDNEGAVDFSSVGPXXXXXXXXXXXXXXXGEPDPAKDLAEVVMQAIFEWNTKNDVVDAERPTVDLDAVVEETYQEAMRLYEYYDQMNEEIAKQEREEAEKAREAEGLPVVMDAELAEDEEVG 216
BLAST of mRNA_P-littoralis_Contig160.51.1 vs. uniprot
Match: A0A835Z232_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z232_9STRA) HSP 1 Score: 98.2 bits (243), Expect = 1.920e-17 Identity = 125/517 (24.18%), Postives = 227/517 (43.91%), Query Frame = 2
Query: 1469 AVGHMAMDDEAVGLFFDLRSQDEKDDERMRVGARMFRKALETEVF-KMEEGGLMINTTSEQLGEYAAGMGQHILCLAGEMIPSHDRAFIVLKETTAQVFDEMASLAYDKVVIDMGNEISPRSRAMADACPMSAAEVLKAIAQLAFHIAHPLRYLQTGFSGMTTEILQDMMKE-LMLPNTEFQENKPFYEIYAREHVISELMDPSP-EGTLKMSSRLLRRVMDLYKSDAVASNIHVLSEELSQRLFDADDSLPDIRRSWDNLMWTLEIDDDDYESEKQMKAAMEGVLASL---VEKLINAGMEAPSDETAA--MCETLALDKESMQKAFSLVSRDIFEKTLLKMMRSQETAADGSRTVLFRSDLLTDEELQELKTTAQKVGVPEAMALEVVAKELKVSVTNLVKRAGKKIRNNDAKEGAGIIGDASRLLGGLCTQVAGAFG-----ATDVT-KTLSIAGTLASLDEYWSSELCFKMVDAVRDPEGAKAEMGIPGALTSAPEPQWEEDAQRILEILGLK 2977
A H+ D+EAVG+FFDL +++EK + + + A+MF A+ + + K L + +L E A G I E+ PS + A L+ +M + ++D +S + + +A++L A +LA + L G+ T E+ +E LM ++F + P Y + V L P + T K + LLRR++ + S A + +E+L L + ++ + +DD D E M+ LA+L +++ + A EA + + A +C L + + ++ F + L ++R Q +R + L++ EL E+ A++ G+ + AL+ A+EL+ + +L++ +R A+ G ++ +L GL Q+ GA G A DV + LS+ G L + E+W SELC+ ++D E A+ + G P A R+L+++G+K
Sbjct: 7 ASQHVPTDEEAVGVFFDLLTEEEKQEIKDKKSAKMFSDAVGSFLPPKHLAQRLDAKAWAARLNEIARG----IRAANVEVKPSREDAIFWLRVKARTCVADM--IRRSAALLDAERGLSTATAPET----LDSAQLLDASLELARLCLENIIVLDGGYKRATAELYAQATEEHLMGLASDFNKATPLYMKFLEGFVRESLEGKRPLDTTAKFDALLLRRMLSMTGSLAKNLALRAYAEQLGAVLQRSAEAAASAAAKGEAGPIVQCLDDLDDALELPRDLRMDVRLAALEVYMQQYVGAKGEAYAPDEAGRWVCGFLGVPESKLEGVLQRERGKAFAQALEPVLRPQGK---------WRYEPLSEGELGEVTAAAERAGLTQEAALDGAARELRPLLQSLIQAGADLMRREQAEAGRRVVEQLDSVLSGLAAQLLGALGGDGARAEDVLMRRLSLKGDLTEVQEFWMSELCWALID-----EDAEGDEGDP--------------ANRVLDLMGIK 485 The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig160.51.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 3
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_P-littoralis_Contig160.51.1 >prot_P-littoralis_Contig160.51.1 ID=prot_P-littoralis_Contig160.51.1|Name=mRNA_P-littoralis_Contig160.51.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=934bp MSPSTLALTLCVLHGAATGFVLLPASGPAASSGCLWVPRSTVGPASTSAAback to top mRNA from alignment at P-littoralis_Contig160:303648..335196+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_P-littoralis_Contig160.51.1 ID=mRNA_P-littoralis_Contig160.51.1|Name=mRNA_P-littoralis_Contig160.51.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=31549bp|location=Sequence derived from alignment at P-littoralis_Contig160:303648..335196+ (Pylaiella littoralis U1_48)back to top Coding sequence (CDS) from alignment at P-littoralis_Contig160:303648..335196+ >mRNA_P-littoralis_Contig160.51.1 ID=mRNA_P-littoralis_Contig160.51.1|Name=mRNA_P-littoralis_Contig160.51.1|organism=Pylaiella littoralis U1_48|type=CDS|length=2802bp|location=Sequence derived from alignment at P-littoralis_Contig160:303648..335196+ (Pylaiella littoralis U1_48)back to top |