mRNA_P-littoralis_Contig160.40.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig160.40.1
Unique NamemRNA_P-littoralis_Contig160.40.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
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BLAST of mRNA_P-littoralis_Contig160.40.1 vs. uniprot
Match: A0A6H5KAF3_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KAF3_9PHAE)

HSP 1 Score: 75.1 bits (183), Expect = 5.700e-13
Identity = 44/129 (34.11%), Postives = 70/129 (54.26%), Query Frame = 1 
Query:  151 KEGEDEPTMFMV---RFESLF-----RSMELEDAFCRTVPIKVGVLSREELYGQFHRREVDAAYRAWNLLLNSVVDVAMMVRMTAEGSPSGGWSAFKNYYTPQADAEKERARQEWYDLRQGLNEAPKQF 513
            K+GEDE   F++      ++F     R +EL +     +P+    +S EEL        V+    +WNLL+ SV  + ++ ++ A+GSPSGGW  F NYY P+A AEKER   +++ L   + E P+ +
Sbjct:   15 KQGEDEQAKFLIFRSNMVAMFAQEGGRDVELTE---EKIPVGKEGVSMEELPRVHSSDSVEKTITSWNLLITSVTYMPILTQIIADGSPSGGWKIFLNYYEPRARAEKERLSSQYHGLEMKVGETPQDY 140
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig160.40.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5KAF3_9PHAE5.700e-1334.11Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig160contigP-littoralis_Contig160:236702..237226 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Model size525
Hectar predicted targeting categoryother localisation
Exons1
Cds size525
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789775.012588-CDS-P-littoralis_Contig160:236701..2372261680789775.012588-CDS-P-littoralis_Contig160:236701..237226Pylaiella littoralis U1_48CDSP-littoralis_Contig160 236702..237226 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig160.40.1prot_P-littoralis_Contig160.40.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig160 236702..237226 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig160.40.1

>prot_P-littoralis_Contig160.40.1 ID=prot_P-littoralis_Contig160.40.1|Name=mRNA_P-littoralis_Contig160.40.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=175bp
DIERTDGTSSAGQDTVVQQLITALGRMGTTPNQGSTVSTYSQGSRVEFTG
KEGEDEPTMFMVRFESLFRSMELEDAFCRTVPIKVGVLSREELYGQFHRR
EVDAAYRAWNLLLNSVVDVAMMVRMTAEGSPSGGWSAFKNYYTPQADAEK
ERARQEWYDLRQGLNEAPKQFSPG*
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mRNA from alignment at P-littoralis_Contig160:236702..237226+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig160.40.1 ID=mRNA_P-littoralis_Contig160.40.1|Name=mRNA_P-littoralis_Contig160.40.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=525bp|location=Sequence derived from alignment at P-littoralis_Contig160:236702..237226+ (Pylaiella littoralis U1_48)
GACATCGAGCGTACGGACGGAACCTCATCTGCGGGACAGGACACCGTGGT
GCAGCAGCTAATCACTGCGCTGGGAAGAATGGGGACAACGCCCAACCAAG
GGTCGACGGTTAGCACGTATAGTCAGGGCAGTAGAGTGGAATTTACTGGA
AAAGAGGGGGAAGATGAGCCGACAATGTTCATGGTACGGTTTGAGTCTTT
GTTTCGATCTATGGAGTTGGAAGATGCGTTTTGCAGGACAGTACCGATCA
AGGTAGGAGTGCTGTCCAGGGAGGAATTGTACGGGCAATTTCACAGACGT
GAGGTAGATGCTGCTTACAGGGCTTGGAACCTGCTCCTGAACAGTGTGGT
AGACGTCGCAATGATGGTTAGGATGACGGCGGAAGGTAGTCCCAGTGGAG
GGTGGTCTGCGTTCAAGAATTACTACACTCCACAGGCAGATGCTGAGAAA
GAAAGAGCACGACAAGAATGGTATGATTTGCGCCAGGGACTGAACGAAGC
ACCAAAGCAGTTTTCTCCAGGGTAA
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Coding sequence (CDS) from alignment at P-littoralis_Contig160:236702..237226+

>mRNA_P-littoralis_Contig160.40.1 ID=mRNA_P-littoralis_Contig160.40.1|Name=mRNA_P-littoralis_Contig160.40.1|organism=Pylaiella littoralis U1_48|type=CDS|length=525bp|location=Sequence derived from alignment at P-littoralis_Contig160:236702..237226+ (Pylaiella littoralis U1_48)
GACATCGAGCGTACGGACGGAACCTCATCTGCGGGACAGGACACCGTGGT
GCAGCAGCTAATCACTGCGCTGGGAAGAATGGGGACAACGCCCAACCAAG
GGTCGACGGTTAGCACGTATAGTCAGGGCAGTAGAGTGGAATTTACTGGA
AAAGAGGGGGAAGATGAGCCGACAATGTTCATGGTACGGTTTGAGTCTTT
GTTTCGATCTATGGAGTTGGAAGATGCGTTTTGCAGGACAGTACCGATCA
AGGTAGGAGTGCTGTCCAGGGAGGAATTGTACGGGCAATTTCACAGACGT
GAGGTAGATGCTGCTTACAGGGCTTGGAACCTGCTCCTGAACAGTGTGGT
AGACGTCGCAATGATGGTTAGGATGACGGCGGAAGGTAGTCCCAGTGGAG
GGTGGTCTGCGTTCAAGAATTACTACACTCCACAGGCAGATGCTGAGAAA
GAAAGAGCACGACAAGAATGGTATGATTTGCGCCAGGGACTGAACGAAGC
ACCAAAGCAGTTTTCTCCAGGGTAA
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