mRNA_P-littoralis_Contig160.36.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig160.36.1
Unique NamemRNA_P-littoralis_Contig160.36.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig160.36.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig160contigP-littoralis_Contig160:202241..202483 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Model size216
Hectar predicted targeting categoryno signal peptide or anchor
Exons2
Cds size144
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789771.5080998-CDS-P-littoralis_Contig160:202240..2023071680789771.5080998-CDS-P-littoralis_Contig160:202240..202307Pylaiella littoralis U1_48CDSP-littoralis_Contig160 202241..202307 +
1680789771.523183-CDS-P-littoralis_Contig160:202335..2024121680789771.523183-CDS-P-littoralis_Contig160:202335..202412Pylaiella littoralis U1_48CDSP-littoralis_Contig160 202336..202412 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789771.5338895-UTR-P-littoralis_Contig160:202412..2024831680789771.5338895-UTR-P-littoralis_Contig160:202412..202483Pylaiella littoralis U1_48UTRP-littoralis_Contig160 202413..202483 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig160.36.1prot_P-littoralis_Contig160.36.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig160 202241..202412 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig160.36.1

>prot_P-littoralis_Contig160.36.1 ID=prot_P-littoralis_Contig160.36.1|Name=mRNA_P-littoralis_Contig160.36.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=48bp
QSDEFFRLPPEPGDALLSRVVCIELQHFGLGAYLLESLLGKKCVVLL*
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mRNA from alignment at P-littoralis_Contig160:202241..202483+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig160.36.1 ID=mRNA_P-littoralis_Contig160.36.1|Name=mRNA_P-littoralis_Contig160.36.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=243bp|location=Sequence derived from alignment at P-littoralis_Contig160:202241..202483+ (Pylaiella littoralis U1_48)
CAGTCTGACGAGTTTTTTCGTTTACCGCCCGAGCCTGGAGACGCGCTGCT
GTCTAGGGTAGTGTGTAGTGGAGCTACAACACTTTGGGTGTCAAGTAGAG
CTGCAACACTTTGGGCTGGGGGCGTACCTTCTCGAAAGTTTGTTGGGCAA
AAAGTGTGTGGTGCTGTTGTGACAAGTGCAATCCCGAGGTTTAATCCAAA
CTCGTTCTAAGGCTTCGGGCCTGTGCTGAGTTGGTTTTACTAT
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Coding sequence (CDS) from alignment at P-littoralis_Contig160:202241..202483+

>mRNA_P-littoralis_Contig160.36.1 ID=mRNA_P-littoralis_Contig160.36.1|Name=mRNA_P-littoralis_Contig160.36.1|organism=Pylaiella littoralis U1_48|type=CDS|length=144bp|location=Sequence derived from alignment at P-littoralis_Contig160:202241..202483+ (Pylaiella littoralis U1_48)
CAGTCTGACGAGTTTTTTCGTTTACCGCCCGAGCCTGGAGACGCGCTGCT
GTCTAGGGTAGTGTGTATAGAGCTGCAACACTTTGGGCTGGGGGCGTACC
TTCTCGAAAGTTTGTTGGGCAAAAAGTGTGTGGTGCTGTTGTGA
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