mRNA_P-littoralis_Contig160.33.3 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig160.33.3
Unique NamemRNA_P-littoralis_Contig160.33.3
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig160.33.3 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig160contigP-littoralis_Contig160:199215..200870 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size852
Hectar predicted targeting categoryother localisation
Exons3
Cds size558
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789771.434864-UTR-P-littoralis_Contig160:199214..1993591680789771.434864-UTR-P-littoralis_Contig160:199214..199359Pylaiella littoralis U1_48UTRP-littoralis_Contig160 199215..199359 +
1680789771.4757125-UTR-P-littoralis_Contig160:200721..2008701680789771.4757125-UTR-P-littoralis_Contig160:200721..200870Pylaiella littoralis U1_48UTRP-littoralis_Contig160 200722..200870 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789771.4443254-CDS-P-littoralis_Contig160:199359..1995121680789771.4443254-CDS-P-littoralis_Contig160:199359..199512Pylaiella littoralis U1_48CDSP-littoralis_Contig160 199360..199512 +
1680789771.4529407-CDS-P-littoralis_Contig160:199987..2001461680789771.4529407-CDS-P-littoralis_Contig160:199987..200146Pylaiella littoralis U1_48CDSP-littoralis_Contig160 199988..200146 +
1680789771.463173-CDS-P-littoralis_Contig160:200475..2007211680789771.463173-CDS-P-littoralis_Contig160:200475..200721Pylaiella littoralis U1_48CDSP-littoralis_Contig160 200476..200721 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig160.33.3prot_P-littoralis_Contig160.33.3Pylaiella littoralis U1_48polypeptideP-littoralis_Contig160 199360..200721 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig160.33.3

>prot_P-littoralis_Contig160.33.3 ID=prot_P-littoralis_Contig160.33.3|Name=mRNA_P-littoralis_Contig160.33.3|organism=Pylaiella littoralis U1_48|type=polypeptide|length=186bp
MKSTLNHDFHEVLGNNTKGAVRKGAENLLKAGEPITSETIFPAARRVFRN
QHSKVEEMVGNMVMERTVNPARHCRGTPARSPEDRVPMRTIEVFGCAPSS
FFNFVAVPMQAFMMNDLRCKLLAEVETLRNATRANDDGGVDDGEDPVGFR
AARVLVGLVDKWRVLPIGGGNTAADKVFTQRCVPE*
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mRNA from alignment at P-littoralis_Contig160:199215..200870+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig160.33.3 ID=mRNA_P-littoralis_Contig160.33.3|Name=mRNA_P-littoralis_Contig160.33.3|organism=Pylaiella littoralis U1_48|type=mRNA|length=1656bp|location=Sequence derived from alignment at P-littoralis_Contig160:199215..200870+ (Pylaiella littoralis U1_48)
CCCTGTATTACTTCGCACAGCCGCTTTCAGTAAGTAAGAGTAGTGATTTC
GTTTGTCTGTTTAATGCTCATTTGCCGCTATTGCCCCTTTCTATGCGTCG
CGTGCAACCCATCTCGTAGAGCGCTTGGTTCGCTCGGTAATTCCCATGAA
GTCCACCCTAAATCACGATTTCCACGAGGTGTTGGGTAACAACACCAAGG
GCGCCGTCCGCAAGGGGGCGGAGAACCTTCTGAAGGCGGGGGAGCCTATC
ACGAGCGAGACCATCTTCCCTGCCGCCCGTCGAGTGTTTCGGAACCAGGT
TTGTCAAGGGGCACCCTGATGGGAGTTTTACAAATCATTGACATGCCGTC
GGCTATCCCCCCCCCTCCACTAGAGCAGAAGATAATGCAGGGGGAGTTTG
TTATTTTTGTTTCCCTCCCTCCCATCTTCCTGTGTTTTGCTACATACGTG
TTCTCATGTTCGATCAAAGCATAACGACTCATTTTGAATCCACGGCCACT
GGTGCCGTATATTTCATGTATTTCATCTCTCAGGTAGTCTGGTACATTAG
GGATTCCTCTTGTAACACATTTGTTAAAGTTTTGTCTGTTTGTTGTGTTG
CACGCGAACAGCGGCCTCGAGCTGTGGTGTTGACGCGTTCGTGTGGTGGA
GCGGCACAAATAATGTTGAGCCCAAAAGAAAAAACATCGCATAACGCTTG
CTGATTGGTACGTTGACCCTGGTCTTGCTTGAAATGTTTACACATTGCTC
TTCTCTCTGTTCCCCCATGCCAGCACTCTAAGGTGGAGGAGATGGTTGGC
AACATGGTCATGGAGCGCACGGTGAACCCGGCAAGGCACTGCCGGGGAAC
CCCCGCAAGGTCGCCTGAAGACCGCGTCCCGATGCGCACGATCGAGGTGT
TTGGCTGCGCCCCATCCTCATTCTTCAACTTCGTAAGTTTCTCGTTATCA
TTTGCTCGGTCTTGACGCGGAGGCTGTTTCTGTATGAATATTGGTGATGC
CGTTGCAAGGAAACACGTGTTGACCCCCCCCCGCGCGCCCCCCGCCATGA
ACAAGTACTTTAGAACCCACAAATCCCACTCGTAGTTGGCTTTTTGAGGT
GGCGTTGCCATGGACTTGTCAAGTCTTGCGTGTCGAGGGTGTCCAACTAG
ACATTATCGATCCTCAATATCACCGAGCAATCCATGAAGCACAACAACTA
ACAAATTTCGTTTGTGTGTATTTTTTTATTCTTCGTATTGCACTTTCTTG
TTTGGAGCCAGGTGGCTGTACCCATGCAGGCGTTTATGATGAACGACCTG
AGGTGCAAGCTGCTCGCCGAAGTGGAGACACTTCGCAACGCGACCCGCGC
CAACGACGATGGTGGTGTGGATGATGGGGAGGACCCCGTAGGGTTCCGTG
CGGCACGGGTGCTCGTGGGTCTGGTGGACAAGTGGAGGGTGCTCCCTATC
GGCGGTGGAAACACCGCCGCCGACAAGGTGTTCACCCAGAGGTGCGTGCC
CGAATAGAACCCCATCGTGTACTACCTCGGCGAGCGCTCTGTAGTGTCAT
GTGTACACGTGCGGTAGGTGCATGTATTTTCTGGGGTGGCACCTAACCTG
TACCTGGTATATCCACACCTCAGATGAGCTGTAGCGGTACATGCGTGTTT
GTAGAT
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Coding sequence (CDS) from alignment at P-littoralis_Contig160:199215..200870+

>mRNA_P-littoralis_Contig160.33.3 ID=mRNA_P-littoralis_Contig160.33.3|Name=mRNA_P-littoralis_Contig160.33.3|organism=Pylaiella littoralis U1_48|type=CDS|length=558bp|location=Sequence derived from alignment at P-littoralis_Contig160:199215..200870+ (Pylaiella littoralis U1_48)
ATGAAGTCCACCCTAAATCACGATTTCCACGAGGTGTTGGGTAACAACAC
CAAGGGCGCCGTCCGCAAGGGGGCGGAGAACCTTCTGAAGGCGGGGGAGC
CTATCACGAGCGAGACCATCTTCCCTGCCGCCCGTCGAGTGTTTCGGAAC
CAGCACTCTAAGGTGGAGGAGATGGTTGGCAACATGGTCATGGAGCGCAC
GGTGAACCCGGCAAGGCACTGCCGGGGAACCCCCGCAAGGTCGCCTGAAG
ACCGCGTCCCGATGCGCACGATCGAGGTGTTTGGCTGCGCCCCATCCTCA
TTCTTCAACTTCGTGGCTGTACCCATGCAGGCGTTTATGATGAACGACCT
GAGGTGCAAGCTGCTCGCCGAAGTGGAGACACTTCGCAACGCGACCCGCG
CCAACGACGATGGTGGTGTGGATGATGGGGAGGACCCCGTAGGGTTCCGT
GCGGCACGGGTGCTCGTGGGTCTGGTGGACAAGTGGAGGGTGCTCCCTAT
CGGCGGTGGAAACACCGCCGCCGACAAGGTGTTCACCCAGAGGTGCGTGC
CCGAATAG
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