mRNA_P-littoralis_Contig160.28.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig160.28.1
Unique NamemRNA_P-littoralis_Contig160.28.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig160.28.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig160contigP-littoralis_Contig160:198242..199017 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size460
Hectar predicted targeting categoryother localisation
Exons2
Cds size351
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789771.3684053-UTR-P-littoralis_Contig160:198241..1982671680789771.3684053-UTR-P-littoralis_Contig160:198241..198267Pylaiella littoralis U1_48UTRP-littoralis_Contig160 198242..198267 +
1680789771.401748-UTR-P-littoralis_Contig160:198934..1990171680789771.401748-UTR-P-littoralis_Contig160:198934..199017Pylaiella littoralis U1_48UTRP-littoralis_Contig160 198935..199017 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789771.3800178-CDS-P-littoralis_Contig160:198267..1983781680789771.3800178-CDS-P-littoralis_Contig160:198267..198378Pylaiella littoralis U1_48CDSP-littoralis_Contig160 198268..198378 +
1680789771.3916478-CDS-P-littoralis_Contig160:198694..1989341680789771.3916478-CDS-P-littoralis_Contig160:198694..198934Pylaiella littoralis U1_48CDSP-littoralis_Contig160 198695..198934 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig160.28.1prot_P-littoralis_Contig160.28.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig160 198268..198934 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig160.28.1

>prot_P-littoralis_Contig160.28.1 ID=prot_P-littoralis_Contig160.28.1|Name=mRNA_P-littoralis_Contig160.28.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=117bp
MPNEDVAAFFMKEVGQTWSPALKTLIAVSLLKESGLPIQVGPSAPRSGTT
KAVAGSRAVYSQACHLVLPFLHGITSHPAWKTPAIVDQHAVVKAAYLLYK
EGGGELNKAQFSGKNS*
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mRNA from alignment at P-littoralis_Contig160:198242..199017+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig160.28.1 ID=mRNA_P-littoralis_Contig160.28.1|Name=mRNA_P-littoralis_Contig160.28.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=776bp|location=Sequence derived from alignment at P-littoralis_Contig160:198242..199017+ (Pylaiella littoralis U1_48)
AGGACATTGCACGCAAGTCCGAGACCATGCCGAATGAGGACGTCGCCGCG
TTCTTCATGAAAGAAGTGGGGCAGACGTGGTCTCCGGCGCTCAAGACGTT
GATCGCCGTCAGCCTCCTCAAGGAGTCAGGGCTACCTGTAAGTGCTGGTG
TTGCTCCAGCGGTTTTCACTCAAGCGCCCCCCCCCGCCAAACGCGTGTCA
CTCAAGTTATTATTTCAACCAAATGAGTTACCATCGTGCTTAAGAATTAT
GAACTGGTCGGCAAGCAGCGGAAGATATGATGCCGTATGTAGCGAGATGG
CGTGTATCGTTCTTTCATGGCTTTAATGGTACCCCAATCCAGGCGATGCT
GGGCCGTTCCAGCTCGGTACATGTATTTACGGTCATGCGCTCCCCCGGCT
ATAACCTTACCCCTATGCTTGCTATTGTCATTTTGTTTTTCGCACTGCGA
CAGATCCAGGTAGGTCCTTCTGCCCCCCGCTCTGGCACCACAAAGGCTGT
GGCGGGGTCCAGGGCTGTTTACAGCCAAGCCTGCCACCTGGTACTGCCGT
TCTTGCATGGGATTACGTCCCACCCGGCATGGAAGACCCCTGCCATTGTC
GATCAACATGCTGTCGTAAAGGCAGCATACCTCCTCTACAAGGAGGGCGG
TGGCGAGCTCAACAAAGCTCAATTTTCCGGTAAGAACTCTTAATAACCTT
TTAGAGCAACATGACCTGCTTTGTGCAGCCATGGATTGCACTTATTCTCA
ACGCTTGCTGTGAAGTTTGGTGCTTC
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Coding sequence (CDS) from alignment at P-littoralis_Contig160:198242..199017+

>mRNA_P-littoralis_Contig160.28.1 ID=mRNA_P-littoralis_Contig160.28.1|Name=mRNA_P-littoralis_Contig160.28.1|organism=Pylaiella littoralis U1_48|type=CDS|length=351bp|location=Sequence derived from alignment at P-littoralis_Contig160:198242..199017+ (Pylaiella littoralis U1_48)
ATGCCGAATGAGGACGTCGCCGCGTTCTTCATGAAAGAAGTGGGGCAGAC
GTGGTCTCCGGCGCTCAAGACGTTGATCGCCGTCAGCCTCCTCAAGGAGT
CAGGGCTACCTATCCAGGTAGGTCCTTCTGCCCCCCGCTCTGGCACCACA
AAGGCTGTGGCGGGGTCCAGGGCTGTTTACAGCCAAGCCTGCCACCTGGT
ACTGCCGTTCTTGCATGGGATTACGTCCCACCCGGCATGGAAGACCCCTG
CCATTGTCGATCAACATGCTGTCGTAAAGGCAGCATACCTCCTCTACAAG
GAGGGCGGTGGCGAGCTCAACAAAGCTCAATTTTCCGGTAAGAACTCTTA
A
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