mRNA_P-littoralis_Contig160.26.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig160.26.1
Unique NamemRNA_P-littoralis_Contig160.26.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig160.26.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig160contigP-littoralis_Contig160:196597..198317 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size288
Hectar predicted targeting categoryother localisation
Exons3
Cds size219
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789771.2946968-UTR-P-littoralis_Contig160:196596..1966491680789771.2946968-UTR-P-littoralis_Contig160:196596..196649Pylaiella littoralis U1_48UTRP-littoralis_Contig160 196597..196649 +
1680789771.3403223-UTR-P-littoralis_Contig160:198301..1983171680789771.3403223-UTR-P-littoralis_Contig160:198301..198317Pylaiella littoralis U1_48UTRP-littoralis_Contig160 198302..198317 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789771.307677-CDS-P-littoralis_Contig160:196649..1966801680789771.307677-CDS-P-littoralis_Contig160:196649..196680Pylaiella littoralis U1_48CDSP-littoralis_Contig160 196650..196680 +
1680789771.3225987-CDS-P-littoralis_Contig160:197557..1976871680789771.3225987-CDS-P-littoralis_Contig160:197557..197687Pylaiella littoralis U1_48CDSP-littoralis_Contig160 197558..197687 +
1680789771.3310173-CDS-P-littoralis_Contig160:198243..1983011680789771.3310173-CDS-P-littoralis_Contig160:198243..198301Pylaiella littoralis U1_48CDSP-littoralis_Contig160 198244..198301 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig160.26.1prot_P-littoralis_Contig160.26.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig160 196650..198301 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig160.26.1

>prot_P-littoralis_Contig160.26.1 ID=prot_P-littoralis_Contig160.26.1|Name=mRNA_P-littoralis_Contig160.26.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=73bp
MGHRALGTSVATPAGPGDARPVQDASAPPAAAPPVHPGDLVSTTKTMGPR
RSIRTLHASPRPCRMRTSPRSS*
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mRNA from alignment at P-littoralis_Contig160:196597..198317+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig160.26.1 ID=mRNA_P-littoralis_Contig160.26.1|Name=mRNA_P-littoralis_Contig160.26.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=1721bp|location=Sequence derived from alignment at P-littoralis_Contig160:196597..198317+ (Pylaiella littoralis U1_48)
CCCAATGTACGTGTGCTGCTAAGAGAGTTACACCTCCGACCTCCCGTCAC
ACGATGGGACATCGAGCTCTTGGTACTTCTGTTGGTGAGTGATTTCCTGC
TGTGTAATCGGTCATGCGAGATAATGCACACTTTTCTTCAACGGCACATC
TCTGACTCTCTTATCCTGTGCGACGTATCATAGCCGCCCGCTTGCTCAAG
CATTATCGTATCGTATGTATACAACAGTGTGCTGCTGTACAGCAGCACAT
CAGTATACCAGATGCGTGGAGCAGAGAGCATGCGGCCATGCAGTGTGGTC
GAGAGTGTGTGGACTTCATAGCAAACGGGGTGTATTGTACTTTGATCTCA
GGCCAGCGTGTGTGTGTGTGTGTGTGTTTTTTTTTTCGCGTATGATCTAA
CTACACTGCTGTCGTACCGCAGTTACAGCAGTCAGTCTAGTGTCGCACAC
AGACAGCAATCATAGTCTCGTCGCACACAGACAGCAACTCTGGGGGTAGT
TTCGTCTTGCACCAGCAGAACCTTGCCCCTCGTTGTATACTTTTGTGCTC
GGTGTTGGGGATTGTCGCAAGATATGTACCACCGGTGTATGTATATAGGT
TCATCATGAGCCCATGCGTAGTTCAACCTGCTGTAAACGACACAAGTGTG
CAGAGGAGGGATGCGACTTGTTGCTTCCCTGGTAGTGATGAACTGCTGCC
ACACCGTTGTTGTGATTCGAATACCGCTCCCCCGATTTAGAGATGGAGGC
GTTTTGGGTAGGATCAAGTTGAGCTCTGATCTTGGTACCCACGTGGAGGC
GTTTTCTGTTCAAATTCGGACCACAATTGAGCTCCCGTTTCCCCGTTTCC
TCCCCCACCACAATCACTCGCTGCTCATCTTGTCCTCTGCCCAAATAAAT
TTGCCAACTTCGTTCTCATCATGTCCGCCCAACTTCGTGACCTTGGTCTA
ACAAACCGCAGCAACACCAGCAGGGCCGGGCGACGCACGTCCAGTTCAGG
ACGCAAGCGCACCACCAGCAGCAGCTCCGCCGGTTCATCCCGGCGACCTC
GTCTCAACGACGAAAACGATGGGTCCACGTCGCAGCATCCGGCCCTGGGG
CTCGCAAAGGTAAGTAACGGGTGTTTGGGAGTGATACTGCCGTATTTGTT
TGAATAGGGACTAGGAATGAGAGAGAGAGAGAGAGAGAGAGAGACAGAGA
CGAGCATGCATGAGACCCCAAAGAGGCTAGATTGATCTGTCGTGGCGAAG
AACAGCCTGCGAATGTGGAGAGGCTAGATTGTGTTTTGGATGGCGTAGAC
CAGTCCGCGGGTGTGCTGTAGAGGTGGCAGTTTTTTTTGGGTGGCTGACA
GCAGTCTGCCACTGTTTGTGGGGTGGTGAAAGCATGCAAGGGTAACCGTG
TCGGGGGGGTGTGCTGTGGTGTCACCTATTCTGGGCGTGGTAGTGTTTGT
CTCAACATAACCCTGAGACGGATGATCACTCTTTGAACCCTCTTGGAGTA
CCGGCAAACTCGCCACACCTCATGTGCTTGTAACCCCGCTTACACAAAAC
GTGTGTCACCATTGATTTCGTACTTTAAGTCAACAGAACACGCCTCCACA
CCGAACGCAAAACCTCTACTGCCCCCCTCCTCCCTTGGTGCTACTAGGAC
ATTGCACGCAAGTCCGAGACCATGCCGAATGAGGACGTCGCCGCGTTCTT
CATGAAAGAAGTGGGGCAGAC
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Coding sequence (CDS) from alignment at P-littoralis_Contig160:196597..198317+

>mRNA_P-littoralis_Contig160.26.1 ID=mRNA_P-littoralis_Contig160.26.1|Name=mRNA_P-littoralis_Contig160.26.1|organism=Pylaiella littoralis U1_48|type=CDS|length=219bp|location=Sequence derived from alignment at P-littoralis_Contig160:196597..198317+ (Pylaiella littoralis U1_48)
ATGGGACATCGAGCTCTTGGTACTTCTGTTGCAACACCAGCAGGGCCGGG
CGACGCACGTCCAGTTCAGGACGCAAGCGCACCACCAGCAGCAGCTCCGC
CGGTTCATCCCGGCGACCTCGTCTCAACGACGAAAACGATGGGTCCACGT
CGCAGCATCCGGACATTGCACGCAAGTCCGAGACCATGCCGAATGAGGAC
GTCGCCGCGTTCTTCATGA
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