mRNA_P-littoralis_Contig16.234.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig16.234.1
Unique NamemRNA_P-littoralis_Contig16.234.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
[Close]
BLAST of mRNA_P-littoralis_Contig16.234.1 vs. uniprot
Match: A0A6H5L589_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L589_9PHAE)

HSP 1 Score: 219 bits (558), Expect = 1.010e-67
Identity = 116/153 (75.82%), Postives = 130/153 (84.97%), Query Frame = 2 
Query:    2 YVDASYADDPADRRSVSGIATMVGGAVVSHGSSTQPIVSNSSAESEYIVAGEGVREALFVRHVLSFIAPETSGSTIKVLEDNEGAMALIQNPLISGRSKHIDVRFHFIRELFRSGVISVEHVRTEEQHADVLTKALSRDLFRYHRKALMNLPE 460
            YVDASYAD   DRRSVSG+AT VGG V+SHGS TQ IVS SS E+EYI AGEGV+EALFVR VLSFIAPETSGS+I+VLEDN+GAMAL+QNPL S RSKHIDVR+HFIR LFRSG IS++ V T EQHADVLTKA S+   +YHR+ LMNLPE
Sbjct:  230 YVDASYADAE-DRRSVSGLATTVGGTVISHGSKTQAIVSLSSTEAEYIAAGEGVKEALFVRAVLSFIAPETSGSSIQVLEDNQGAMALVQNPLSSARSKHIDVRYHFIRGLFRSGEISIKFVSTSEQHADVLTKAHSKSSLQYHRRKLMNLPE 381
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BLAST of mRNA_P-littoralis_Contig16.234.1 vs. uniprot
Match: A0A6H5KGI0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KGI0_9PHAE)

HSP 1 Score: 216 bits (549), Expect = 2.620e-66
Identity = 114/153 (74.51%), Postives = 131/153 (85.62%), Query Frame = 2 
Query:    2 YVDASYADDPADRRSVSGIATMVGGAVVSHGSSTQPIVSNSSAESEYIVAGEGVREALFVRHVLSFIAPETSGSTIKVLEDNEGAMALIQNPLISGRSKHIDVRFHFIRELFRSGVISVEHVRTEEQHADVLTKALSRDLFRYHRKALMNLPE 460
            YVDASYAD   D+RSV+G+AT VGG VVSHGS TQ I+S SS E+EYI AGEGV+EALFVR VLSF+APETSGS+IKVLEDN+GA+AL+QNPL SGR+KHIDVR+HFI  LFRSG ISV+ V T EQHAD+LTKALSR   +YHR+ LMNLPE
Sbjct:  235 YVDASYADTE-DKRSVTGMATTVGGTVVSHGSKTQSILSLSSTEAEYIAAGEGVKEALFVRAVLSFVAPETSGSSIKVLEDNQGAIALVQNPLSSGRTKHIDVRYHFIHGLFRSGDISVKFVPTTEQHADLLTKALSRANLQYHRRKLMNLPE 386
[Close]
BLAST of mRNA_P-littoralis_Contig16.234.1 vs. uniprot
Match: A0A6H5KGX6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KGX6_9PHAE)

HSP 1 Score: 220 bits (561), Expect = 5.670e-66
Identity = 116/153 (75.82%), Postives = 131/153 (85.62%), Query Frame = 2 
Query:    2 YVDASYADDPADRRSVSGIATMVGGAVVSHGSSTQPIVSNSSAESEYIVAGEGVREALFVRHVLSFIAPETSGSTIKVLEDNEGAMALIQNPLISGRSKHIDVRFHFIRELFRSGVISVEHVRTEEQHADVLTKALSRDLFRYHRKALMNLPE 460
            YVDASYAD   DRRSVSG+AT VGG V+SHGS TQ IVS SS E+EYI AGEGV+EALFVR VLSFIAPETSGS+I+VLEDN+GAMAL+QNPL S RSKHIDVR+HFIR LFRSG IS++ V T EQHAD+LTKALS+   +YHR+ LMNLPE
Sbjct:  445 YVDASYADAE-DRRSVSGLATTVGGTVISHGSKTQAIVSLSSTEAEYIAAGEGVKEALFVRAVLSFIAPETSGSSIQVLEDNQGAMALVQNPLSSARSKHIDVRYHFIRGLFRSGDISIKFVSTSEQHADMLTKALSKSSLQYHRRKLMNLPE 596
[Close]
BLAST of mRNA_P-littoralis_Contig16.234.1 vs. uniprot
Match: A0A6H5KR64_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KR64_9PHAE)

HSP 1 Score: 207 bits (528), Expect = 2.270e-65
Identity = 103/152 (67.76%), Postives = 123/152 (80.92%), Query Frame = 2 
Query:    2 YVDASYADDPADRRSVSGIATMVGGAVVSHGSSTQPIVSNSSAESEYIVAGEGVREALFVRHVLSFIAPETSGSTIKVLEDNEGAMALIQNPLISGRSKHIDVRFHFIRELFRSGVISVEHVRTEEQHADVLTKALSRDLFRYHRKALMNLP 457
            +VD+SYAD   DRRS +G+A  VGG VV   + TQP+ + S+ E+EYI AGEGV+EALFVR VLSFIAPETSG+TI+V EDNEGA+AL+QNP  S RSKHIDVRFHFIRELF++G I+ ++V TEEQHAD+LTK L R    YHRKALMNLP
Sbjct:   60 FVDSSYADSTVDRRSTTGLAVTVGGTVVCASTKTQPVTAQSTTEAEYIAAGEGVKEALFVRGVLSFIAPETSGATIRVREDNEGALALVQNPFSSARSKHIDVRFHFIRELFKAGKITADYVSTEEQHADMLTKVLGRGKLEYHRKALMNLP 211
[Close]
BLAST of mRNA_P-littoralis_Contig16.234.1 vs. uniprot
Match: A0A6H5KQ05_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KQ05_9PHAE)

HSP 1 Score: 216 bits (551), Expect = 2.410e-65
Identity = 114/153 (74.51%), Postives = 132/153 (86.27%), Query Frame = 2 
Query:    2 YVDASYADDPADRRSVSGIATMVGGAVVSHGSSTQPIVSNSSAESEYIVAGEGVREALFVRHVLSFIAPETSGSTIKVLEDNEGAMALIQNPLISGRSKHIDVRFHFIRELFRSGVISVEHVRTEEQHADVLTKALSRDLFRYHRKALMNLPE 460
            YVDASYAD   DRRSVSG+AT VGG V+SHGS+TQ IVS SS E+EYI AGEGV+EALFVR VLSF+ PETSGS+I+VL+DN+GA+AL+QNPL SGR+KHIDVR+HFIR LFRSG ISV+ V T EQHAD+LTKALSR   +YHR+ LMNLPE
Sbjct:  352 YVDASYADTE-DRRSVSGLATTVGGTVISHGSNTQSIVSVSSTEAEYIAAGEGVKEALFVRAVLSFVPPETSGSSIEVLDDNQGAIALVQNPLRSGRTKHIDVRYHFIRGLFRSGDISVKFVPTTEQHADLLTKALSRVSLQYHRRKLMNLPE 503
[Close]
BLAST of mRNA_P-littoralis_Contig16.234.1 vs. uniprot
Match: A0A6H5JQH8_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JQH8_9PHAE)

HSP 1 Score: 207 bits (528), Expect = 8.010e-65
Identity = 111/153 (72.55%), Postives = 127/153 (83.01%), Query Frame = 2 
Query:    2 YVDASYADDPADRRSVSGIATMVGGAVVSHGSSTQPIVSNSSAESEYIVAGEGVREALFVRHVLSFIAPETSGSTIKVLEDNEGAMALIQNPLISGRSKHIDVRFHFIRELFRSGVISVEHVRTEEQHADVLTKALSRDLFRYHRKALMNLPE 460
            YVDASYAD   DRRS+SG+AT VGG VVSHGS TQ IVS SS E+EYI AGEGV+EALFVR VLSF+APE SGS+I+VLE N+GA+AL+QNPL SGR+KHIDVRFHFIR LFR G I+V+ V T EQHAD+LTK LSR   +YHR+ LM LPE
Sbjct:  101 YVDASYADTK-DRRSMSGLATTVGGTVVSHGSKTQSIVSLSSTEAEYIAAGEGVKEALFVRDVLSFVAPEPSGSSIQVLEGNQGAIALVQNPLSSGRTKHIDVRFHFIRGLFRPGDIAVKFVPTTEQHADLLTKGLSRASLQYHRRKLMILPE 252
[Close]
BLAST of mRNA_P-littoralis_Contig16.234.1 vs. uniprot
Match: A0A6H5K9K6_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K9K6_9PHAE)

HSP 1 Score: 211 bits (537), Expect = 1.120e-64
Identity = 110/152 (72.37%), Postives = 126/152 (82.89%), Query Frame = 2 
Query:    2 YVDASYADDPADRRSVSGIATMVGGAVVSHGSSTQPIVSNSSAESEYIVAGEGVREALFVRHVLSFIAPETSGSTIKVLEDNEGAMALIQNPLISGRSKHIDVRFHFIRELFRSGVISVEHVRTEEQHADVLTKALSRDLFRYHRKALMNLP 457
            YVDASYAD    RRSV+GIA  VGG VVSH S TQ IVS S++E+EYI AGEGV+EALFVR VLSFIAPETSG+ IKVLEDN+GA++L+QNP  S RSKHIDVRFHFIRELF+SG ISVE++ T+EQHAD+LTKAL R     HR ALMN+P
Sbjct:  219 YVDASYADRDTGRRSVTGIAVTVGGTVVSHASKTQRIVSLSTSEAEYIAAGEGVKEALFVRAVLSFIAPETSGAKIKVLEDNQGAISLVQNPFSSARSKHIDVRFHFIRELFKSGRISVEYIPTDEQHADLLTKALGRTKLEDHRNALMNIP 370
[Close]
BLAST of mRNA_P-littoralis_Contig16.234.1 vs. uniprot
Match: A0A6H5KPN5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KPN5_9PHAE)

HSP 1 Score: 207 bits (527), Expect = 1.370e-64
Identity = 111/153 (72.55%), Postives = 127/153 (83.01%), Query Frame = 2 
Query:    2 YVDASYADDPADRRSVSGIATMVGGAVVSHGSSTQPIVSNSSAESEYIVAGEGVREALFVRHVLSFIAPETSGSTIKVLEDNEGAMALIQNPLISGRSKHIDVRFHFIRELFRSGVISVEHVRTEEQHADVLTKALSRDLFRYHRKALMNLPE 460
            YVDASYAD   DRRSVSG+AT VGG VVSHGS TQ IVS S+ E+EYI A +GV+EALFVR V SF+ PETSGS+I+VLEDN+GA+AL+QNPL SGR+KHIDVRFHFIR LFRSG ISV+ V T EQHAD+LTKALSR   +YHR+   NLPE
Sbjct:  107 YVDASYADTE-DRRSVSGLATTVGGTVVSHGSKTQSIVSLSATEAEYIAAEDGVKEALFVRAVQSFVVPETSGSSIQVLEDNQGAIALVQNPLSSGRTKHIDVRFHFIRGLFRSGDISVKFVPTTEQHADLLTKALSRASLQYHRRKPTNLPE 258
[Close]
BLAST of mRNA_P-littoralis_Contig16.234.1 vs. uniprot
Match: A0A6H5JU90_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JU90_9PHAE)

HSP 1 Score: 220 bits (561), Expect = 2.630e-64
Identity = 117/153 (76.47%), Postives = 132/153 (86.27%), Query Frame = 2 
Query:    2 YVDASYADDPADRRSVSGIATMVGGAVVSHGSSTQPIVSNSSAESEYIVAGEGVREALFVRHVLSFIAPETSGSTIKVLEDNEGAMALIQNPLISGRSKHIDVRFHFIRELFRSGVISVEHVRTEEQHADVLTKALSRDLFRYHRKALMNLPE 460
            YVDASYAD   DRRSVSG+AT VGG VVSHGS TQ +VS SS E+EYI AGEGV+EALFVR VLSF+APETSGS+IKVLEDN+GA+AL+QNPL SGR+KHIDVR+HFIR LFRSG ISV+ V T EQHAD+LTKALSR   +YHR+ LMNLPE
Sbjct:  704 YVDASYADTE-DRRSVSGLATTVGGTVVSHGSKTQSMVSLSSTEAEYIAAGEGVKEALFVRAVLSFVAPETSGSSIKVLEDNQGAIALVQNPLSSGRTKHIDVRYHFIRGLFRSGDISVKFVPTTEQHADLLTKALSRVSLQYHRRKLMNLPE 855
[Close]
BLAST of mRNA_P-littoralis_Contig16.234.1 vs. uniprot
Match: A0A6H5KGN1_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KGN1_9PHAE)

HSP 1 Score: 220 bits (560), Expect = 3.620e-64
Identity = 117/153 (76.47%), Postives = 132/153 (86.27%), Query Frame = 2 
Query:    2 YVDASYADDPADRRSVSGIATMVGGAVVSHGSSTQPIVSNSSAESEYIVAGEGVREALFVRHVLSFIAPETSGSTIKVLEDNEGAMALIQNPLISGRSKHIDVRFHFIRELFRSGVISVEHVRTEEQHADVLTKALSRDLFRYHRKALMNLPE 460
            YVDASYAD   DRRSVSG+AT VGG VVSHGS TQ IVS SS E+EYI AGEGV+EALFVR VLSF+APETSGS+I+VLEDN+GA+AL+QNPL SGR+KHIDVR+HFIR LFRSG ISV+ V T EQHAD+LTKALSR   +YHR+ LMNLPE
Sbjct:  703 YVDASYADTE-DRRSVSGLATTVGGTVVSHGSKTQSIVSLSSTEAEYIAAGEGVKEALFVRAVLSFVAPETSGSSIQVLEDNQGAIALVQNPLSSGRTKHIDVRYHFIRGLFRSGDISVKFVPTTEQHADLLTKALSRVSLQYHRRKLMNLPE 854
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig16.234.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5L589_9PHAE1.010e-6775.82Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KGI0_9PHAE2.620e-6674.51Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KGX6_9PHAE5.670e-6675.82Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KR64_9PHAE2.270e-6567.76Uncharacterized protein n=2 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KQ05_9PHAE2.410e-6574.51Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5JQH8_9PHAE8.010e-6572.55Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5K9K6_9PHAE1.120e-6472.37Integrase catalytic domain-containing protein n=1 ... [more]
A0A6H5KPN5_9PHAE1.370e-6472.55Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JU90_9PHAE2.630e-6476.47Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5KGN1_9PHAE3.620e-6476.47Integrase catalytic domain-containing protein n=1 ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig16contigP-littoralis_Contig16:1014979..1015477 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog4565.Traes_7DS_A62A567C4.1
PFAMsRVT_2,gag_pre-integrs,rve
Model size499
Max annot lvl35493|Streptophyta
Hectar predicted targeting categoryother localisation
Exons1
Evalue1.12e-21
EggNOG OGsCOG2801@1|root,KOG0017@2759|Eukaryota,37THH@33090|Viridiplantae,3GG2K@35493|Streptophyta,3M2IR@4447|Liliopsida,3IKX9@38820|Poales
DescriptionReverse transcriptase (RNA-dependent DNA polymerase)
Cds size399
COG categoryL
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789771.1853356-UTR-P-littoralis_Contig16:1014978..10150421680789771.1853356-UTR-P-littoralis_Contig16:1014978..1015042Pylaiella littoralis U1_48UTRP-littoralis_Contig16 1014979..1015042 +
1680789771.208063-UTR-P-littoralis_Contig16:1015441..10154771680789771.208063-UTR-P-littoralis_Contig16:1015441..1015477Pylaiella littoralis U1_48UTRP-littoralis_Contig16 1015442..1015477 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789771.1976876-CDS-P-littoralis_Contig16:1015042..10154411680789771.1976876-CDS-P-littoralis_Contig16:1015042..1015441Pylaiella littoralis U1_48CDSP-littoralis_Contig16 1015043..1015441 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig16.234.1prot_P-littoralis_Contig16.234.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig16 1015043..1015441 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig16.234.1

>prot_P-littoralis_Contig16.234.1 ID=prot_P-littoralis_Contig16.234.1|Name=mRNA_P-littoralis_Contig16.234.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=133bp
MVGGAVVSHGSSTQPIVSNSSAESEYIVAGEGVREALFVRHVLSFIAPET
SGSTIKVLEDNEGAMALIQNPLISGRSKHIDVRFHFIRELFRSGVISVEH
VRTEEQHADVLTKALSRDLFRYHRKALMNLPE*
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mRNA from alignment at P-littoralis_Contig16:1014979..1015477+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig16.234.1 ID=mRNA_P-littoralis_Contig16.234.1|Name=mRNA_P-littoralis_Contig16.234.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=499bp|location=Sequence derived from alignment at P-littoralis_Contig16:1014979..1015477+ (Pylaiella littoralis U1_48)
GTACGTCGACGCGAGCTACGCCGACGACCCGGCTGATAGACGTTCGGTCT
CCGGGATAGCAACCATGGTCGGTGGGGCTGTTGTCAGCCACGGAAGTTCA
ACGCAGCCGATAGTTTCAAACTCCTCAGCAGAGTCAGAGTACATTGTGGC
TGGGGAGGGCGTGAGAGAGGCGTTGTTTGTGCGGCATGTGCTTTCGTTTA
TTGCGCCGGAGACGAGTGGTAGCACAATCAAGGTCCTTGAGGACAACGAG
GGGGCTATGGCGCTGATTCAAAACCCTCTCATCTCTGGCCGTAGCAAACA
CATAGACGTGCGCTTCCATTTTATTCGGGAGTTGTTTAGATCGGGGGTCA
TCTCGGTCGAGCACGTCAGGACGGAGGAACAGCACGCCGACGTTCTCACC
AAGGCGCTAAGCCGGGACTTGTTCCGGTACCACCGGAAAGCATTGATGAA
TTTGCCGGAGTAGGCGACTGTTTTCCCGTCTTTGTTTTGAGCACAGGCG
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Coding sequence (CDS) from alignment at P-littoralis_Contig16:1014979..1015477+

>mRNA_P-littoralis_Contig16.234.1 ID=mRNA_P-littoralis_Contig16.234.1|Name=mRNA_P-littoralis_Contig16.234.1|organism=Pylaiella littoralis U1_48|type=CDS|length=399bp|location=Sequence derived from alignment at P-littoralis_Contig16:1014979..1015477+ (Pylaiella littoralis U1_48)
ATGGTCGGTGGGGCTGTTGTCAGCCACGGAAGTTCAACGCAGCCGATAGT
TTCAAACTCCTCAGCAGAGTCAGAGTACATTGTGGCTGGGGAGGGCGTGA
GAGAGGCGTTGTTTGTGCGGCATGTGCTTTCGTTTATTGCGCCGGAGACG
AGTGGTAGCACAATCAAGGTCCTTGAGGACAACGAGGGGGCTATGGCGCT
GATTCAAAACCCTCTCATCTCTGGCCGTAGCAAACACATAGACGTGCGCT
TCCATTTTATTCGGGAGTTGTTTAGATCGGGGGTCATCTCGGTCGAGCAC
GTCAGGACGGAGGAACAGCACGCCGACGTTCTCACCAAGGCGCTAAGCCG
GGACTTGTTCCGGTACCACCGGAAAGCATTGATGAATTTGCCGGAGTAG
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