mRNA_P-littoralis_Contig16.180.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig16.180.1
Unique NamemRNA_P-littoralis_Contig16.180.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
[Close]
BLAST of mRNA_P-littoralis_Contig16.180.1 vs. uniprot
Match: A0A6H5LJA6_9PHAE (NB-ARC domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LJA6_9PHAE)

HSP 1 Score: 334 bits (857), Expect = 1.860e-101
Identity = 177/253 (69.96%), Postives = 206/253 (81.42%), Query Frame = 3 
Query:  369 AGSMPVVKGRGLTASAWEKLIKEFEIVAKKERVRGEQSTSLGMVLAASFDALAQRKQEEFLKIAVLAPGAVARIEMLLNLWELQDAEGTREEAEGLVGKCLLQNVGGDEYRVHDLILEFMKINIKAEVEMLKGATALQAQYLGRLDVVKSYRNSELDAGSQGILSLAALWRSLEELSGDCELETTSYRASLGALEACEATADVANSYLSVGILFELQGKFNEADALLLRVIAIQESTLGPDHPELAASFNERA 1127
            AGSM VVKG+GLTA AWE+LIKEFE VAKK RVRGEQS+S+ +VL  SFDALA RKQEE LK+ VLA GA+A IEML NLWE++DAEGTREEAEGLV KCLLQ VGG  YRVHDL+LEF+K +I+AE EM++ ATALQAQYLGR+DV+KSY + E  AG+QG+  L ALWRS+E+LSGD ELE  SYRASLG LE+CEAT DVA+SY  VG LF +QGKF EA+ L  R  AIQE  LGP+HP++A S N RA
Sbjct:  218 AGSMSVVKGKGLTAVAWEELIKEFENVAKKMRVRGEQSSSIKVVLGTSFDALAARKQEESLKMTVLAAGALAPIEMLRNLWEIEDAEGTREEAEGLVSKCLLQAVGGSGYRVHDLVLEFVKTSIRAEEEMVEKATALQAQYLGRVDVLKSYGDPEHGAGNQGLFFLDALWRSVEKLSGDPELEVASYRASLGELESCEATEDVASSYRWVGFLFNIQGKFTEAEPLYGRSQAIQEKVLGPEHPDVATSLNNRA 470
[Close]
BLAST of mRNA_P-littoralis_Contig16.180.1 vs. uniprot
Match: D7G722_ECTSI (NB-ARC and TPR repeat-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G722_ECTSI)

HSP 1 Score: 317 bits (812), Expect = 5.590e-89
Identity = 167/256 (65.23%), Postives = 201/256 (78.52%), Query Frame = 3 
Query:  369 AGSMPVVKGRGLTASAWEKLIKEFEIVAKKERVRGEQSTSLGMVLAASFDALAQRKQEEFLKIAVLAPGAVARIEMLLNLWELQDAEGTREEAEGLVGKCLLQNVGGDEYRVHDLILEFMKINIKAEVEMLKGATALQAQYLGRLDVVKSYRNSELDAGSQGILSLAALWRSLEELSGDCELETTSYRASLGALEACEATADVANSYLSVGILFELQGKFNEADALLLRVIAIQESTLGPDHPELAASFNERANVL 1136
            AGSM VV+G+GLTA AWE+L KE E VAKK R RGEQS+S+ +VL  SFD+LA RKQEEFLK+AVLA GA+A IEML NLWE++DAEGTR++AEGLV KCLL  VGG  YRVHDL+LEF K +I+AE E +K ATALQAQYLGRLDV++ Y + E  AG QG+  L ALWRS+E+LSGD ELE  SY  SLG LE+CEAT  VA SY SVG LF +QGK+ EA+ L  R +AIQE  LGP+HP++A S + RA++L
Sbjct:  477 AGSMSVVRGKGLTAVAWEELAKELENVAKKMRARGEQSSSMKVVLETSFDSLAVRKQEEFLKMAVLAAGALAPIEMLRNLWEVEDAEGTRDDAEGLVSKCLLHAVGGGGYRVHDLVLEFAKTSIRAEEETVKKATALQAQYLGRLDVLEGYGDPEHGAGGQGLFFLDALWRSVEKLSGDPELEVASYHNSLGELESCEATKAVARSYWSVGFLFNIQGKYAEAEPLYERSLAIQEKVLGPEHPDVATSLDNRASLL 732
[Close]
BLAST of mRNA_P-littoralis_Contig16.180.1 vs. uniprot
Match: D7G720_ECTSI (NB-ARC and TPR repeat-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G720_ECTSI)

HSP 1 Score: 306 bits (784), Expect = 1.100e-84
Identity = 164/250 (65.60%), Postives = 193/250 (77.20%), Query Frame = 3 
Query:  369 AGSMPVVKGRGLTASAWEKLIKEFEIVAKKERVRGEQSTSLGMVLAASFDALAQRKQEEFLKIAVLAPGAVARIEMLLNLWELQDAEGTREEAEGLVGKCLLQNVGGDEYRVHDLILEFMKINIKAEVEMLKGATALQAQYLGRLDVVKSYRNSELDAGSQGILSLAALWRSLEELSGDCELETTSYRASLGALEACEATADVANSYLSVGILFELQGKFNEADALLLRVIAIQESTLGPDHPELAASFN 1118
            AGSM VV+G+GLTA AWE+L KE E VAKK R RGEQS+S+ +VL  SFD+LA RKQEEFLK+AVLA GA+A IEML NLWE++DAEGTR++AEGLV KCLL  VGG  YRVHDL+LEF K +I+AE E +K ATALQAQYLGRLDV++SY + E   G QG+  L ALWRS+E+LSGD  LE  SYRASL  LE+CEAT  VA SY SVG LF +Q K+ EA+ L  R  AIQE  LGP+HP +A S N
Sbjct:  460 AGSMSVVRGKGLTAVAWEELAKELENVAKKMRARGEQSSSMKVVLETSFDSLAVRKQEEFLKMAVLAAGALAPIEMLRNLWEIEDAEGTRDDAEGLVSKCLLHAVGGGGYRVHDLVLEFAKTSIRAEEETVKKATALQAQYLGRLDVLESYGDPEHGTGDQGLFFLDALWRSVEKLSGDPGLEVASYRASLEELESCEATEAVATSYGSVGFLFNIQSKYAEAEPLYERSRAIQEKVLGPEHPHVATSLN 709
[Close]
BLAST of mRNA_P-littoralis_Contig16.180.1 vs. uniprot
Match: D8LGG5_ECTSI (NB-ARC and TPR repeat-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LGG5_ECTSI)

HSP 1 Score: 302 bits (774), Expect = 3.090e-83
Identity = 157/256 (61.33%), Postives = 202/256 (78.91%), Query Frame = 3 
Query:  369 AGSMPVVKGRGLTASAWEKLIKEFEIVAKKERVRGEQSTSLGMVLAASFDALAQRKQEEFLKIAVLAPGAVARIEMLLNLWELQDAEGTREEAEGLVGKCLLQNVGGDEYRVHDLILEFMKINIKAEVEMLKGATALQAQYLGRLDVVKSYRNSELDAGSQGILSLAALWRSLEELSGDCELETTSYRASLGALEACEATADVANSYLSVGILFELQGKFNEADALLLRVIAIQESTLGPDHPELAASFNERANVL 1136
            AGSM  VKG+GLTA AWE+L K FE VAKK R RG+QS+++ +VL  SFD+LA +KQEEFL+++VLA GA+A IEML NLWE++DAEGTR+EAEGLV KCLL  VG   YRVHD++LEF K +I+A+ E ++ ATALQAQ+LGRLDV+KSYR+ E  AG +G+  L +LWRS+E+LSGD ELE T+YRASL  LE+C+AT D+A+SY +VG LF+ Q K+ EA+ L  R  A+QE  LGP+HP +A S N RA++L
Sbjct:  435 AGSMSAVKGKGLTAVAWEELAKSFENVAKKMRARGQQSSAIKVVLETSFDSLAVQKQEEFLRMSVLAAGALAPIEMLRNLWEIEDAEGTRDEAEGLVNKCLLHAVGDGGYRVHDMVLEFAKTSIRADEETVEKATALQAQFLGRLDVLKSYRDPEHGAGDRGLFFLDSLWRSVEKLSGDPELEVTTYRASLRELESCKATEDMASSYSAVGFLFDAQRKYIEAEPLHERAQAMQEKVLGPEHPGVAQSLNNRADLL 690
[Close]
BLAST of mRNA_P-littoralis_Contig16.180.1 vs. uniprot
Match: D7FUD7_ECTSI (NB-ARC and TPR repeat-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FUD7_ECTSI)

HSP 1 Score: 300 bits (767), Expect = 1.300e-82
Identity = 160/253 (63.24%), Postives = 195/253 (77.08%), Query Frame = 3 
Query:  369 AGSMPVVKGRGLTASAWEKLIKEFEIVAKKERVRGEQSTSLGMVLAASFDALAQRKQEEFLKIAVLAPGAVARIEMLLNLWELQDAEGTREEAEGLVGKCLLQNVGGDEYRVHDLILEFMKINIKAEVEMLKGATALQAQYLGRLDVVKSYRNSELDAGSQGILSLAALWRSLEELSGDCELETTSYRASLGALEACEATADVANSYLSVGILFELQGKFNEADALLLRVIAIQESTLGPDHPELAASFNERA 1127
            AGSM  VKG+GLTA AWE+L KEFE VAKK R RG+QS+S+ +VL  +FD+LA RKQ+EFL +AVLA GA+A IEML NLWE++DAEGT  EAEGLV K LL  VGG  YR+HDL+L+F K +I+AE E +K ATALQAQYLGRLDVV+SY + E  AG QGI  L ALWRS+E+LSGD +LE  SYRASLGALE  EAT   A SY SVG LF +QGK+++A++L  R +A QE  LG +HP++A S N+ A
Sbjct:  261 AGSMSAVKGKGLTAVAWEELAKEFENVAKKMRARGQQSSSIKVVLETTFDSLATRKQKEFLMMAVLAAGALAPIEMLSNLWEIEDAEGTHAEAEGLVSKYLLHAVGGGGYRMHDLVLDFAKTSIRAEEETVKRATALQAQYLGRLDVVESYGDPEHGAGDQGIFFLDALWRSVEKLSGDPQLEVASYRASLGALEWGEATEAAARSYFSVGFLFNVQGKYDDAESLYKRSLATQEKVLGQEHPDVAQSLNDLA 513
[Close]
BLAST of mRNA_P-littoralis_Contig16.180.1 vs. uniprot
Match: A0A6H5KXS7_9PHAE (NB-ARC domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KXS7_9PHAE)

HSP 1 Score: 279 bits (713), Expect = 5.320e-79
Identity = 158/285 (55.44%), Postives = 192/285 (67.37%), Query Frame = 3 
Query:  369 AGSMPVVKGRGLTASAWEKLIKEFEIVAKKERVRGEQSTSLGMVLAASFDALAQRKQEEFLKIAVLAPG-----------------------------AVARIEMLLNLWELQDAEGTREEAEGLVGKCLLQNVGGDEYRVHDLILEFMKINIKAEVEMLKGATALQAQYLGRLDVVKSYRNSELDAGSQGILSLAALWRSLEELSGDCELETTSYRASLGALEACEATADVANSYLSVGILFELQGKFNEADALLLRVIAIQESTLGPDHPELAASFNERANVL 1136
            AGSM VVKG+GLTA AW++L +  E VAKK R RGEQS+S+  VL  SFD+LA RKQEEFLK+AVLA                               A+A IEML NLWE++DAEGTR+EAEGLV KCLL  VGG  YRVHDL+LE+ K  I+A+ EM++  TALQA +LGRLDV+KSYR+ E  AG+Q +  L ALWRS+E+LSGD ELE         ALE+CEAT  VA SY SVG LF +QGK+ EA+ L  R  AIQE+ LGP+HP++  S N RA +L
Sbjct:  423 AGSMSVVKGKGLTAVAWKELAENLENVAKKMRARGEQSSSINAVLETSFDSLAVRKQEEFLKLAVLAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXALAPIEMLRNLWEIEDAEGTRDEAEGLVSKCLLHAVGGGGYRVHDLVLEYAKTRIRADAEMVRKVTALQAHFLGRLDVLKSYRDPEHGAGNQSLFFLDALWRSVEKLSGDPELEV--------ALESCEATEAVARSYWSVGFLFNIQGKYAEAEPLYERSQAIQENVLGPEHPDVGTSLNNRALLL 699
[Close]
BLAST of mRNA_P-littoralis_Contig16.180.1 vs. uniprot
Match: D8LPV9_ECTSI (NB-ARC and TPR repeat-containig protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LPV9_ECTSI)

HSP 1 Score: 283 bits (724), Expect = 1.280e-77
Identity = 151/252 (59.92%), Postives = 188/252 (74.60%), Query Frame = 3 
Query:  369 AGSMPVVKGRGLTASAWEKLIKEFEIVAKKERVRGEQSTSLGMVLAASFDALAQRKQEEFLKIAVLAPGAVARIEMLLNLWELQDAEGTREEAEGLVGKCLLQNVGGDEYRVHDLILEFMKINIKAEVEMLKGATALQAQYLGRLDVVKSYRNSELDAGSQGILSLAALWRSLEELSGDCELETTSYRASLGALEACEATADVANSYLSVGILFELQGKFNEADALLLRVIAIQESTLGPDHPELAASFNER 1124
            AGSMPVVKG+GL   AWE+LI+EFE V       GE+S +L MVL ASF+ALA RK+EEFL++AVLAPGAVA  EML NLWE+QD EGT+EEAEGLV KCLLQ+V G  YRVHDL+L+++++ IK + E +K ATALQAQYLGRLDVV SY + +  A +QG+  L  LWR LE+LSGD  LET SYRA LG L++CEATA+VAN    V +L+++QGKF EA+ L  R   I E  LG +H ++A + N R
Sbjct:  454 AGSMPVVKGKGLKDGAWEELIEEFENVTTIMWEPGEESRNLDMVLGASFNALAARKREEFLRMAVLAPGAVAPFEMLRNLWEIQDVEGTKEEAEGLVNKCLLQDVDGVGYRVHDLLLKYLRVKIKQDGERVKKATALQAQYLGRLDVVMSYGDQKHGADNQGLFGLGTLWRCLEKLSGDPVLETASYRAILGELDSCEATAEVANCLEWVALLYDIQGKFAEAEPLYERSQTILEKVLGSEHSDVAKALNNR 705
[Close]
BLAST of mRNA_P-littoralis_Contig16.180.1 vs. uniprot
Match: A0A6H5KU94_9PHAE (NB-ARC domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KU94_9PHAE)

HSP 1 Score: 276 bits (705), Expect = 3.900e-75
Identity = 153/258 (59.30%), Postives = 182/258 (70.54%), Query Frame = 3 
Query:  369 AGSMPVVKGRGLTASAWEKLIKEFEIVAKKERVRGEQSTSLGMVLAASFDALAQRKQEEFLKIAVLAPGAVARIEMLLNLWELQDAEGTREEAEGLVGKCLLQNVGGDEYRVHDLILEFMKINIKAEVEMLKGATALQAQYLGRLDVVKSYRNSELDAGSQGILSLAALWRSLEELSGDCELETTSYRASLGALEACEATADVANSYLSVGILFELQGKFNEADALLLRVIAIQESTLGPDHPELAASFNERANVLGA 1142
            AGS+PVVKG+GLTA AW KLI E E V  K     E S SL +VL  SFDAL  RK++ F K AVLAPGAVA  EMLLNLWE +D  GTRE+AEGLV KCLLQ+VGG  YRVHDL+L+F+KI IKA++EM K   ALQAQ+LGRL+V+KSY + E  AG+QG+  L ALWRS+E+LSGD +LE  SY  SL ALE+CEAT  VA+SY SVG LF +Q              AIQE  LGP+H ++A S   RA +L A
Sbjct:  354 AGSLPVVKGKGLTAGAWGKLIDELENVVTKMEASLEDSNSLNVVLETSFDALTFRKKQAFKKTAVLAPGAVASTEMLLNLWETEDTGGTREDAEGLVSKCLLQDVGGGGYRVHDLVLDFVKIKIKADMEMAKKIAALQAQFLGRLNVLKSYEHPEHGAGNQGLFVLDALWRSVEQLSGDPKLEVPSYSTSLAALESCEATTVVASSYSSVGFLFSIQ--------------AIQEQILGPEHLDVAMSLINRAQLLRA 597
[Close]
BLAST of mRNA_P-littoralis_Contig16.180.1 vs. uniprot
Match: A0A6H5JUC1_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JUC1_9PHAE)

HSP 1 Score: 174 bits (440), Expect = 2.530e-42
Identity = 121/264 (45.83%), Postives = 151/264 (57.20%), Query Frame = 3 
Query:  369 AGSMPVVKGRGLTASAWEKLIKEFEIVAKKERVRGEQSTSLGMVLAASFDALAQRKQEEFLKIAVLAPGAVARIEMLLNLWELQDAEGTREEAEGLVGKCLLQNVGGDE-YRVHDLILEFMKINIKAEVEMLKGATALQAQYLG--RLDVVKSYRNSELDAGSQGILSLAALWRSLEELSGDCELETTSYRASLGALEACEATADVANSYL---SVGILFELQGKFNEADALLLRVIAIQESTLGPDHPELAASFNERANVLGA 1142
            AGSM VV+GRGLTA AWE+LIK FE  A      G ++TSL MVL ASF ALA +K++EFLK+AVLAPGAVA I ML NLWE +D +G REEA+GL  K LLQ+VGG   YRVHDL+L+F+KI +KA+VEM     A++ + LG    DV  S  N                                  RA  G L  C +T       L   S      +QGK++EA+ L  R  A++   LGP+HP LAA+ N RA +L A
Sbjct:    5 AGSMSVVEGRGLTAGAWEELIKLFENTATMMWESGLEATSLDMVLGASFSALAAKKRKEFLKMAVLAPGAVAPIAMLRNLWETEDNKGAREEADGLTSKSLLQDVGGGGGYRVHDLVLDFVKIKVKADVEM-----AIREKVLGPEHPDVAASLNN----------------------------------RA--GLLRKCFSTIPFTIFTLKHDSSRYPHCIQGKYSEAEPLYDRCQAMKGKALGPEHPSLAATLNNRAELLRA 227
[Close]
BLAST of mRNA_P-littoralis_Contig16.180.1 vs. uniprot
Match: A0A6H5K8C2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K8C2_9PHAE)

HSP 1 Score: 137 bits (345), Expect = 1.560e-34
Identity = 71/106 (66.98%), Postives = 85/106 (80.19%), Query Frame = 3 
Query:  462 RVRGEQSTSLGMVLAASFDALAQRKQEEFLKIAVLAPGAVARIEMLLNLWELQDAEGTREEAEGLVGKCLLQNVGGDEYRVHDLILEFMKINIKAEVEMLKGATAL 779
            R RG+QS+S+ +VL  SFD LA RKQEEFLK+AVLA GA+A IEML NLWE++DAEGTR+EAEGLV KCLL  V G EYRVH L+LEF K +I+AE E ++ AT L
Sbjct:    2 RARGQQSSSITVVLETSFDTLAARKQEEFLKMAVLAAGALAPIEMLRNLWEIEDAEGTRDEAEGLVRKCLLHAVAGGEYRVHVLVLEFSKTSIRAEEETVQRATVL 107
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig16.180.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 18
Match NameE-valueIdentityDescription
A0A6H5LJA6_9PHAE1.860e-10169.96NB-ARC domain-containing protein n=1 Tax=Ectocarpu... [more]
D7G722_ECTSI5.590e-8965.23NB-ARC and TPR repeat-containing protein n=1 Tax=E... [more]
D7G720_ECTSI1.100e-8465.60NB-ARC and TPR repeat-containing protein n=1 Tax=E... [more]
D8LGG5_ECTSI3.090e-8361.33NB-ARC and TPR repeat-containing protein n=1 Tax=E... [more]
D7FUD7_ECTSI1.300e-8263.24NB-ARC and TPR repeat-containing protein n=1 Tax=E... [more]
A0A6H5KXS7_9PHAE5.320e-7955.44NB-ARC domain-containing protein n=1 Tax=Ectocarpu... [more]
D8LPV9_ECTSI1.280e-7759.92NB-ARC and TPR repeat-containig protein n=1 Tax=Ec... [more]
A0A6H5KU94_9PHAE3.900e-7559.30NB-ARC domain-containing protein n=1 Tax=Ectocarpu... [more]
A0A6H5JUC1_9PHAE2.530e-4245.83Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5K8C2_9PHAE1.560e-3466.98Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig16contigP-littoralis_Contig16:670215..676524 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog2880.D7G722
PFAMsNB-ARC,TPR_10,TPR_12,TPR_16,TPR_4,TPR_7,TPR_8
Model size2472
Max annot lvl2759|Eukaryota
KEGG koko:K10407
KEGG Pathwayko05132,map05132
Hectar predicted targeting categorymitochondrion
Exons11
Evalue3.74e-94
EggNOG OGsCOG0457@1|root,KOG4658@1|root,KOG1840@2759|Eukaryota,KOG4658@2759|Eukaryota
DescriptionADP binding
Cds size1356
COG categoryS
BRITEko00000,ko00001,ko03019,ko04812
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig16.180.1prot_P-littoralis_Contig16.180.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig16 670460..674119 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789769.6590495-UTR-P-littoralis_Contig16:670214..6704591680789769.6590495-UTR-P-littoralis_Contig16:670214..670459Pylaiella littoralis U1_48UTRP-littoralis_Contig16 670215..670459 +
1680789769.7745273-UTR-P-littoralis_Contig16:674119..6741641680789769.7745273-UTR-P-littoralis_Contig16:674119..674164Pylaiella littoralis U1_48UTRP-littoralis_Contig16 674120..674164 +
1680789769.7848403-UTR-P-littoralis_Contig16:674868..6751201680789769.7848403-UTR-P-littoralis_Contig16:674868..675120Pylaiella littoralis U1_48UTRP-littoralis_Contig16 674869..675120 +
1680789769.793942-UTR-P-littoralis_Contig16:675833..6759561680789769.793942-UTR-P-littoralis_Contig16:675833..675956Pylaiella littoralis U1_48UTRP-littoralis_Contig16 675834..675956 +
1680789769.8030274-UTR-P-littoralis_Contig16:676073..6765241680789769.8030274-UTR-P-littoralis_Contig16:676073..676524Pylaiella littoralis U1_48UTRP-littoralis_Contig16 676074..676524 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789769.6828449-CDS-P-littoralis_Contig16:670459..6705811680789769.6828449-CDS-P-littoralis_Contig16:670459..670581Pylaiella littoralis U1_48CDSP-littoralis_Contig16 670460..670581 +
1680789769.6938412-CDS-P-littoralis_Contig16:670695..6709481680789769.6938412-CDS-P-littoralis_Contig16:670695..670948Pylaiella littoralis U1_48CDSP-littoralis_Contig16 670696..670948 +
1680789769.7129507-CDS-P-littoralis_Contig16:671109..6715081680789769.7129507-CDS-P-littoralis_Contig16:671109..671508Pylaiella littoralis U1_48CDSP-littoralis_Contig16 671110..671508 +
1680789769.725435-CDS-P-littoralis_Contig16:672616..6727421680789769.725435-CDS-P-littoralis_Contig16:672616..672742Pylaiella littoralis U1_48CDSP-littoralis_Contig16 672617..672742 +
1680789769.734507-CDS-P-littoralis_Contig16:672976..6731021680789769.734507-CDS-P-littoralis_Contig16:672976..673102Pylaiella littoralis U1_48CDSP-littoralis_Contig16 672977..673102 +
1680789769.7466552-CDS-P-littoralis_Contig16:673385..6735111680789769.7466552-CDS-P-littoralis_Contig16:673385..673511Pylaiella littoralis U1_48CDSP-littoralis_Contig16 673386..673511 +
1680789769.7552-CDS-P-littoralis_Contig16:673679..6738051680789769.7552-CDS-P-littoralis_Contig16:673679..673805Pylaiella littoralis U1_48CDSP-littoralis_Contig16 673680..673805 +
1680789769.7649813-CDS-P-littoralis_Contig16:674041..6741191680789769.7649813-CDS-P-littoralis_Contig16:674041..674119Pylaiella littoralis U1_48CDSP-littoralis_Contig16 674042..674119 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig16.180.1

>prot_P-littoralis_Contig16.180.1 ID=prot_P-littoralis_Contig16.180.1|Name=mRNA_P-littoralis_Contig16.180.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=452bp
MISLTASRPWRTITRPYRKIRAVLGCASQSPGAFSAHGAHDAGSMPVVKG
RGLTASAWEKLIKEFEIVAKKERVRGEQSTSLGMVLAASFDALAQRKQEE
FLKIAVLAPGAVARIEMLLNLWELQDAEGTREEAEGLVGKCLLQNVGGDE
YRVHDLILEFMKINIKAEVEMLKGATALQAQYLGRLDVVKSYRNSELDAG
SQGILSLAALWRSLEELSGDCELETTSYRASLGALEACEATADVANSYLS
VGILFELQGKFNEADALLLRVIAIQESTLGPDHPELAASFNERANVLGAQ
GKYVEAEPLFERAAETFDKALGPDHPDVAVPLTSRARLLGKQGKYEEANP
LFLRAITTCEKTLGPGHPDLATTLNEQARLRGLQGKYKEADVLLLQVIAI
QERNLGPDHPMLATSINERAIVLEAQGKYVEAEPLYERAAEIFDKASGPD
H*
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mRNA from alignment at P-littoralis_Contig16:670215..676524+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig16.180.1 ID=mRNA_P-littoralis_Contig16.180.1|Name=mRNA_P-littoralis_Contig16.180.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=6310bp|location=Sequence derived from alignment at P-littoralis_Contig16:670215..676524+ (Pylaiella littoralis U1_48)
CGCTGTCTGCCCTAACGCTTCGTGCCCTCGTCTACAAGCTTTCCTCCAGA
TGGGTGATCCAGTCGGACTGGCACAATCGGTCCTGGGTGCGTTCAGAAGG
GCGCGAACGGCGGTGGAAAGCGCCCAAAACTTCCCGGCAACTGTAGGCGA
TCGGCTCAAGGATGGCGAATCCCAACTTGAGCAGCTCCAGCGCGACCCCA
GGCACGTGGCGCGCACCGGCATTGAGCGCGAGCTGACCCAGCTGAATGAT
CTCGCTGACCGCATCAAGGCCCTGGCGCACGATCACACGCCCGTACCGGA
AGATTCGTGCTGTGCTCGGCTGTGCAAGTCAGTCACCCGGTGCGTTCTCC
GCACATGGAGCACATGATATGGTGCTGTCAAGAGTTGGGGGGAAGCTTGA
TCGAAGCCAAACTTTGACTCCCGACGAAAAACCGATCCAGGTTGTCGTGC
TCTGTGGACGCTTGCCGTTGGTGCTCGCCATCGCGGGTTCCATGCCTGTC
GTGAAAGGCAGGGGCTTGACGGCCAGCGCTTGGGAAAAGCTGATCAAAGA
GTTCGAGATTGTGGCCAAGAAGGAGAGAGTTCGCGGAGAGCAGTCGACAT
CTCTCGGTATGGTCCTCGCCGCCAGTTTCGACGCCCTGGCACAAAGGAAG
CAGGAGGAGTTTCTGAAGATAGCTGTGTTGGCGCCGGGTGCTGTTGCGCG
GATCGAGATGCTGCTGAACCTGTGGGAGCTGCAGGTGCACGATGGTGTCT
GGAAGTAGTTTTGGATGATCTAGCTGTTGGGTGGACGGGCACGTTGTGTG
GGTTGCGTAAGCGATTGTGCTTGATGATGGGCGTTCTTACGTCTGTGCTG
CGTTTTAACCTCGACGTATGCCTCCCCTGATTTTCAATTTTGCAGGACGC
GGAGGGCACGCGAGAAGAAGCTGAGGGACTCGTTGGAAAGTGCCTGCTGC
AAAATGTTGGTGGTGATGAGTACCGTGTACACGACCTCATCCTGGAGTTT
ATGAAAATCAATATCAAGGCAGAGGTTGAGATGCTGAAAGGGGCTACAGC
GCTGCAGGCGCAGTACCTTGGGAGACTCGACGTGGTGAAGAGTTACAGAA
ATTCGGAGCTTGATGCTGGGAGTCAAGGCATCTTGTCATTAGCGGCCCTG
TGGCGCTCCCTGGAGGAGCTCTCGGGAGACTGTGAGCTGGAGACTACTTC
GTACCGCGCCAGCCTCGGGGCGTTGGAAGCATGCGAAGCGACGGCAGACG
TGGCGAACTCCTACTTGTCTGTCGGCATCTTGTTCGAACTCCAGGTGCGG
CAGGTGTTGTTTGGTTGTTTGTTTGAGGCTTTGGTTGTGTTCGAAGGGTA
TTCTTTGTGTAGTAGCATGTGGTATATGGTTGACGACGTTGACAATCGGT
TGTTTACGCGCCTCCTGAAACCAACGTGTGTTAGTGTTGAAGCGCTCGAT
GACGCACTTCCTCACAACTCTAAAGTTTTAACCCTTCCGTAATTCCCAGG
TAATTTTGAAGTAAATATTTTTTCGGTCCCAGAAGAGGTAGAGCTAATTG
TCGAGTTCCATTCTCGGTGCACCTGTTCTACTCGCTACACCACAGGTATG
GGAGGAGTTGTCAAACAGACTAGTAAGCGCCGAAGAATGCTTTAAATGTG
CCAAGCGATTGTCTTTGTTGCTCTGGTGAGAAATGGTTTAGGCATGTTTG
GTCTTAATTTTGCATCTTGAGTGAAAAGCTGTGTCACGACAACCCACTAC
GTTTTGCACAGGGAAAGTTTGCTGAGGCCGACCATTTTATGAGCGGTAGC
TGGTAATACGGGAGAACACCTTGGGCCCGCAGAATCCGATCGTGGCTTCC
TCGCTTCATGATCTGGCGAGGTGAAAGTTTAGTCATGTGAGAGTCGAATT
ACTCGTCGTGCAAATATCGACAGGATCCACACGTGATGGTGCACATTTGT
AGTTCTGGGTGGACCACTCCATCACGTGTGGATCCTGTGGATATACGGAG
GAAGATTTCTTCGAATCTCACACGACTGAACTTCAACCTCGCCAGGTGAT
GAAGCGACGAAGCCACGATCGGATTCTGGTACATCCCCTCGTACAGCCAG
CGACCGCTCATGCCAGGTCGTTGTCAGTCAAACAGATGGAGTACGTCAGC
AAATTGAAAGCAAGTTCACGTGTTCATGCTGCGGATATCATAGTGCTCAA
CAACCGGGCCGTTGTTGAGGATGAATATGGGAGCCGCCAGATGAATCACG
GAATATTATTGTCGGGCGTGGTGGTCGAAGAGCAGGTGGAAGCAAGGGAA
TTGTTCAGGTACTATATTTTTGCAGGTCGTCCGTAGGTTCATTTATCGTG
GAAGTTTTTCAAGATCCCAACTAACCTCGGTGGTCCAAAATGTGCTCGAC
AGGGCAAATTCAACGAGGCGGATGCCTTACTGCTGCGAGTCATTGCAATC
CAGGAGAGCACTCTGGGCCCCGACCACCCAGAGCTTGCCGCAAGCTTCAA
CGAACGAGCAAATGTGTTGGGGGCACAGGTGACGCTCGGGTGACTATAAC
CGGAAATGCTTGTGTACAGGGGCGCTTTGAAACCGTGTTTGAAGCATTTG
TCAAATATGTGGCCTCTCGACAAATTAATGGTTACGTTCGTCGAGTGAAT
GTTCGTGCCGTGGACGCCCATGCTCACCAGCCCGGACGCCATTTGATTTT
GAGCTTTCGTTCCCACTCAAGCGTTAACTGCAGTACTATCGCGCTGTTCC
CCGGCGGTCCAGGGCAAGTACGTCGAAGCCGAGCCTTTGTTTGAAAGGGC
CGCTGAGACTTTCGACAAGGCTTTAGGACCTGACCATCCTGATGTGGCAG
TACCGCTCACCAGCCGGGCAAGGTTGTTGGGGAAGCAGGTGAGAGCTGTG
AGAGATTTCCGTGGAAATGTTCCGGGTGCTCTGTGCATGTTGAATGGAGT
GCTCACTGACCGAGTTTGGTGTCAACTAGGTGAAGGCCACCAGGAAAATA
AAATAAAAGGTCTCGTGGTGCTCTGTAGGTGTCGTGGTGCTCTGTTGTTG
GGCTCGCAGGTGCGAACCGTACAAATACCTTGGGAAAATTGTTGGGGTTC
GCATTTGTTGGTGGAATTTCTTGTATGTTGTGGAGCCCTTCCTCATAACA
AACGCGTTTCCTGCGATGCAGGGTAAATACGAAGAGGCCAACCCTCTTTT
TCTTCGGGCTATTACGACCTGTGAAAAGACGCTGGGCCCTGGCCACCCTG
ACCTTGCCACAACGCTCAACGAGCAAGCGAGGTTGCGAGGCTTGCAGGTG
AGAGCCGTGAGAGATTTCCGGGCAAGTCTTGGGCTGCTTTGTAGGTCAAC
AGGTTTCTCGATGTTCGAGGCACTATACTCGTATATTTGTTATCCGGTGT
TTGGTTGATCATGGAACATTGCTGAGATCCCAACCAACGTCGGTGGTCCA
AAATTTGCTTGACAGGGCAAATACAAAGAGGCTGACGTCTTGTTGCTGCA
AGTCATTGCAATCCAGGAGAGAAACCTGGGCCCCGACCACCCAATGCTTG
CCACAAGCATCAACGAACGAGCGATTGTGTTGGAGGCACAGGTAAGGGTC
GAAGACTATGACCGGTCAAGCTTGTGTCAAGGGGTGCCTCGAAACCGTGT
TTGCAACTTACATAAAATATGCTCGGGGCTTTTCGAGAAATTTACGGTCA
CGTTCGTCGCGCAAATGCCGTGCCGAGGACGCCCATGCTCATCGGCCCGG
ACGCCATTAGATTTTGAGTTCCCGTTCCCACTCAAGCGTTGACCGCAGTA
CGATCGCGCTGTTCCCCGGTGATCCAGGGCAAGTACGTCGAAGCCGAGCC
CCTGTATGAAAGGGCCGCTGAGATTTTCGACAAGGCTTCAGGACCTGATC
ATTAGGTGGCAATAGCGCTCACCAGCCGGGCGAGGTTGTTGGGGAAGCAG
GTGAGAGGTATGAGAGATTTCGGGGGGAATGTTCCGGGTGCTTTGTGAAT
TTCGATTTGATTGTTTACTAATGTAGGGTTGTTAACAACCAGGTGGATGC
CGTCAGCAAAATCGAAGGAAAGTGTTTGTGGTGCTCTGTAGATGGTATCG
TGCTCACCAACCGTGCCAAGTAGTTTAGGCCGTAGATCAGCTTTTAGAAG
TTCTGAGATAGCTTTCTTATGTGCCATGTGGATTTGTATCGTAGCGCTGA
TTGCGCTCAACAACTGGGACGTTTTGTTTTTGAGAGCCAGTAAGAGCAAT
GAGAATTCTCTAGGGATATTCGTAGGGTGTTCAGTTGATGTCGCGTGCTA
AAATAAACGGGTGCGGTTGTTAAGCTTCGCAGGTGAGAGTCAAACGATTG
TTCTCAAGATGCCCCTAGACGGTCTGCAGCTTGAGCGAACGACGCTTAAT
TATGCTTCTAGACCTCAGAGAGTCTCCCAAAACTTCTCACCACTGTCAGA
TTATCAGAAAATGGTTGGGAAGCTTGCTGCTGCATCCGTCAAAAACGTGC
CGCGGCAGGGATGCTGTCCGCTGTTGTCAAGAACCAGTGCCGTGCCACAG
TTGCATTGCAACAAACTGTGTGAGTCGCATCAATTTCCGAGCGACTTGTG
AGCTTTTCTGCTGTGAAACATTCTCTAAGTGCGTCCTCTGATTCGTTATT
ACAGGGGAAGTTCGCTGAGACGCAGCCCTTGTACGAGAGAGCCCTGGCCA
TAAATGGACTTGCTAAGGGGGTGGATCACCCGATCACGATTACTTTACGC
GCTGAGATGGAGGAATTGTACATCAAACAGAGGCTGCTCGACAAGGCTTC
TCCTCTGTTGGAGAAGGTTGTCAGTGCCCGTGAGCGTGCTCAAGGACGTG
ACCTTCCAGACGTTGCGTTAGCGCTCAACAATCGGGCGGAGTTGTTCAGG
TGTCAGGTGAGAGCCGCGGAACTTCCGCTGGACGTTTTTCGTAGATATGC
GGAGTACAGGCAAACATCGGGAAACACTCTTTGAGAGGATGCGTCATTGT
TTAAAGAGTGGGCGCAACAATCGGGCGCGATTGTTGAACAGTCAGATAAG
TGTCAAATTCAGCAGGCAGGCAGCAATCGATCATCATCGATTAGAACGCA
ACTACCAGTCAAAATCGCCCATGTCTAATGGTTGTCCAGCTGTCTGGCGG
TACGGGTGTAGTGTTTGCTATGCCTATCCGTTTGATCACTCAAGTTCTGA
TAAAGTGATCGCACATGCTTGCGCAGATAGTATTGAAACTACGTGTCAGC
ACGTAAGAGAAAAACTAGAAGGTTGTTGAATACGAAGTTCATGTTAGCAT
TGCCATTCAGCCGTATAGGTGAGGCGTCAATATATCCACGTAAATCTGTT
GTAGCCTGTCGGCTCTTGAAGAACCTGCGGCAGCAGCTGTCTGTTTTTGA
CGACACGGCCGCGATGCCTTGCTCGTGTTGAATTCCCCAACGAGAAGGTT
TTACGTGTTTCAGACAGTTTTATTTTGTGGTATTGCTGAAAGACTAGCTT
TTGCGTACTGCGTACCACGCACGAGTCGTTGTTGACCTCCGAGCCTTGTC
ACCTTTCGTCACCGTATGCAATCTGCTCACGGGGGTAAAATTCGCTCGGT
GCACTTCGAACGGCCACAGGGAAAGTACAACGACGCAATTTCCCTTTTGG
AGAGCGCCCATTCAATCCTGAAAAGTAAGCTGGGCGAACACCATCCAGAC
ACGGTCGACACTCGGACGAGGCTGGAGAGTCTGCGGAAGCAGGTTCGTGC
ACAGTAGAGTCGTGTTGCAGACCCGCCTCGTGCAAGCCTCGTGCAAGCCT
ACAACGTGCCGCGCGAAGGCGTGGCACCACTGAACATGTTTCGTTCCGCA
TCATTGCAGGTGTGTTGGACGGCGTCAAGACGAGATCGAAGGCGATGCCT
GCAGCAACGGCCACTGCAAAGGTGACGGATGACGAGTCATGGGAAAGCTT
CCATGACGGTTTGCGCCAAGGAGGCCGGGGGGTGACATGTACGTCTCGGT
TTGCTGCTAGGCTCACGCCGTCGGCGAGCTCAAGTCTTGCTTAGTTCTCG
TTTGGTATTTGATGAAGGTGTTCATTTTTGTTGCCTCTTTCTGGACAGGG
CGGGCACTACGCTCTTTTGCCTCTATCCTCGTTTGTGTCCGCAGCGGTTC
AATCTGAGTCGTACCGACGAGAGTTCTGGAACCTGCGTTCGTGCAGGCAT
GGAATGGCCACCCTTGGTTCAGTAACGTTGATCCGCCTACTGTTGTAAGA
CGTGGGCGGTGTTTTCTGAAGTCGCGGGACAAAATTGTGATAACACAAAC
CACGCGTAAT
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Coding sequence (CDS) from alignment at P-littoralis_Contig16:670215..676524+

>mRNA_P-littoralis_Contig16.180.1 ID=mRNA_P-littoralis_Contig16.180.1|Name=mRNA_P-littoralis_Contig16.180.1|organism=Pylaiella littoralis U1_48|type=CDS|length=1356bp|location=Sequence derived from alignment at P-littoralis_Contig16:670215..676524+ (Pylaiella littoralis U1_48)
ATGATCTCGCTGACCGCATCAAGGCCCTGGCGCACGATCACACGCCCGTA
CCGGAAGATTCGTGCTGTGCTCGGCTGTGCAAGTCAGTCACCCGGTGCGT
TCTCCGCACATGGAGCACATGACGCGGGTTCCATGCCTGTCGTGAAAGGC
AGGGGCTTGACGGCCAGCGCTTGGGAAAAGCTGATCAAAGAGTTCGAGAT
TGTGGCCAAGAAGGAGAGAGTTCGCGGAGAGCAGTCGACATCTCTCGGTA
TGGTCCTCGCCGCCAGTTTCGACGCCCTGGCACAAAGGAAGCAGGAGGAG
TTTCTGAAGATAGCTGTGTTGGCGCCGGGTGCTGTTGCGCGGATCGAGAT
GCTGCTGAACCTGTGGGAGCTGCAGGACGCGGAGGGCACGCGAGAAGAAG
CTGAGGGACTCGTTGGAAAGTGCCTGCTGCAAAATGTTGGTGGTGATGAG
TACCGTGTACACGACCTCATCCTGGAGTTTATGAAAATCAATATCAAGGC
AGAGGTTGAGATGCTGAAAGGGGCTACAGCGCTGCAGGCGCAGTACCTTG
GGAGACTCGACGTGGTGAAGAGTTACAGAAATTCGGAGCTTGATGCTGGG
AGTCAAGGCATCTTGTCATTAGCGGCCCTGTGGCGCTCCCTGGAGGAGCT
CTCGGGAGACTGTGAGCTGGAGACTACTTCGTACCGCGCCAGCCTCGGGG
CGTTGGAAGCATGCGAAGCGACGGCAGACGTGGCGAACTCCTACTTGTCT
GTCGGCATCTTGTTCGAACTCCAGGGCAAATTCAACGAGGCGGATGCCTT
ACTGCTGCGAGTCATTGCAATCCAGGAGAGCACTCTGGGCCCCGACCACC
CAGAGCTTGCCGCAAGCTTCAACGAACGAGCAAATGTGTTGGGGGCACAG
GGCAAGTACGTCGAAGCCGAGCCTTTGTTTGAAAGGGCCGCTGAGACTTT
CGACAAGGCTTTAGGACCTGACCATCCTGATGTGGCAGTACCGCTCACCA
GCCGGGCAAGGTTGTTGGGGAAGCAGGGTAAATACGAAGAGGCCAACCCT
CTTTTTCTTCGGGCTATTACGACCTGTGAAAAGACGCTGGGCCCTGGCCA
CCCTGACCTTGCCACAACGCTCAACGAGCAAGCGAGGTTGCGAGGCTTGC
AGGGCAAATACAAAGAGGCTGACGTCTTGTTGCTGCAAGTCATTGCAATC
CAGGAGAGAAACCTGGGCCCCGACCACCCAATGCTTGCCACAAGCATCAA
CGAACGAGCGATTGTGTTGGAGGCACAGGGCAAGTACGTCGAAGCCGAGC
CCCTGTATGAAAGGGCCGCTGAGATTTTCGACAAGGCTTCAGGACCTGAT
CATTAG
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