mRNA_P-littoralis_Contig16.121.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig16.121.1
Unique NamemRNA_P-littoralis_Contig16.121.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
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BLAST of mRNA_P-littoralis_Contig16.121.1 vs. uniprot
Match: D8LCI8_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LCI8_ECTSI)

HSP 1 Score: 247 bits (630), Expect = 1.670e-76
Identity = 119/155 (76.77%), Postives = 133/155 (85.81%), Query Frame = 1 
Query:    1 PARSLIAGDNVTVNLKGFTSGDGNGTLGADFEVGELLLA----NGSAWLASWEEGTYVEGKPGYEGSMLQLEALAPIPAGVLHEVTVYRSNGILAQCGMPENDTSPTISVVSASDPPWNATGRFTFTQTVGTGCRDLNYCSTRGECDYCLQRCNC 453
            PAR L+ GDNVTVNLKGFTSG+GNGT G DF  G+LLLA    NGS WLASWEEGTYVEG+ GYE SML+L+ALAPIPAG LHEVTVYRSNGI AQCGM EN+T+ TISVVS+SDPPWN+TG FTF+Q VG GCR+LNYCS +GECDYC QRC+C
Sbjct:  194 PARDLVEGDNVTVNLKGFTSGEGNGTEGRDFLHGDLLLAGESSNGSTWLASWEEGTYVEGERGYEDSMLRLQALAPIPAGELHEVTVYRSNGIRAQCGMGENETTSTISVVSSSDPPWNSTGEFTFSQAVGPGCRELNYCSGQGECDYCRQRCDC 348
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BLAST of mRNA_P-littoralis_Contig16.121.1 vs. uniprot
Match: A0A6H5KP52_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KP52_9PHAE)

HSP 1 Score: 226 bits (576), Expect = 1.530e-68
Identity = 110/141 (78.01%), Postives = 122/141 (86.52%), Query Frame = 1 
Query:    1 PARSLIAGDNVTVNLKGFTSGDGNGTLGADFEVGELLLA----NGSAWLASWEEGTYVEGKPGYEGSMLQLEALAPIPAGVLHEVTVYRSNGILAQCGMPENDTSPTISVVSASDPPWNATGRFTFTQTVGTGCRDLNYCS 411
            PAR L+AGDNVTVNLKGFTSG+GNGT G DF  G+LLLA    NGS WLASWEEGTYVEG+ GYE SML+L+ALAP+PAG LHEVTVYRSNGI AQCGM EN+T+ TISVVSASDPPWN+TG FTF+Q VG GCR+LNYCS
Sbjct:  138 PARDLVAGDNVTVNLKGFTSGEGNGTEGRDFLYGDLLLAGESSNGSTWLASWEEGTYVEGERGYEDSMLRLQALAPVPAGELHEVTVYRSNGIRAQCGMGENETTSTISVVSASDPPWNSTGEFTFSQAVGPGCRELNYCS 278
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig16.121.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LCI8_ECTSI1.670e-7676.77Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KP52_9PHAE1.530e-6878.01Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig16contigP-littoralis_Contig16:483541..486729 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog2880.D8LCI8
PFAMsEGF_2
Model size456
Max annot lvl2759|Eukaryota
Hectar predicted targeting categoryother localisation
Exons5
Evalue2.74e-77
EggNOG OGsKOG1225@1|root,KOG1225@2759|Eukaryota
Ec32 ortholog descriptionEGF-like domain, extracellular
Ec32 orthologEc-03_002750.1
Descriptionregulation of canonical Wnt signaling pathway involved in osteoblast differentiation
Cds size453
COG categoryL
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789768.1684349-CDS-P-littoralis_Contig16:483540..4835881680789768.1684349-CDS-P-littoralis_Contig16:483540..483588Pylaiella littoralis U1_48CDSP-littoralis_Contig16 483541..483588 +
1680789768.179696-CDS-P-littoralis_Contig16:484235..4843581680789768.179696-CDS-P-littoralis_Contig16:484235..484358Pylaiella littoralis U1_48CDSP-littoralis_Contig16 484236..484358 +
1680789768.1888013-CDS-P-littoralis_Contig16:485050..4851551680789768.1888013-CDS-P-littoralis_Contig16:485050..485155Pylaiella littoralis U1_48CDSP-littoralis_Contig16 485051..485155 +
1680789768.2035646-CDS-P-littoralis_Contig16:486107..4862491680789768.2035646-CDS-P-littoralis_Contig16:486107..486249Pylaiella littoralis U1_48CDSP-littoralis_Contig16 486108..486249 +
1680789768.2148361-CDS-P-littoralis_Contig16:486692..4867271680789768.2148361-CDS-P-littoralis_Contig16:486692..486727Pylaiella littoralis U1_48CDSP-littoralis_Contig16 486693..486727 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig16.121.1prot_P-littoralis_Contig16.121.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig16 483541..486727 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig16.121.1

>prot_P-littoralis_Contig16.121.1 ID=prot_P-littoralis_Contig16.121.1|Name=mRNA_P-littoralis_Contig16.121.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=151bp
PARSLIAGDNVTVNLKGFTSGDGNGTLGADFEVGELLLANGSAWLASWEE
GTYVEGKPGYEGSMLQLEALAPIPAGVLHEVTVYRSNGILAQCGMPENDT
SPTISVVSASDPPWNATGRFTFTQTVGTGCRDLNYCSTRGECDYCLQRCN
C
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mRNA from alignment at P-littoralis_Contig16:483541..486729+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig16.121.1 ID=mRNA_P-littoralis_Contig16.121.1|Name=mRNA_P-littoralis_Contig16.121.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=3189bp|location=Sequence derived from alignment at P-littoralis_Contig16:483541..486729+ (Pylaiella littoralis U1_48)
CCGGCTAGAAGTCTCATAGCCGGGGATAACGTGACTGTCAACCTTAAGGT
ATGCGCGTGATGAGACCGCATTCCTTTAAACAATCGTTTTTGGCGTACCG
GGAACTACCGTATCTCGTCAGAGTGTCATGAGTCGAGAATTTTCGTCTCA
AAAAGGCAACCCGTCGGGTGGTTTCTGTTATTGCTGTTGTTGTTGGCTTT
GCTTGGGGGAAAAATGTAGAGGGAGCGTGAATGTTTGCTTGGTTTGTTAA
CACCCATGGCTTCGGCGCTAATCTGCAAAATTCAAAAGCGAAAGGTCTTT
ATGTCAAGATCGTTCCGCGCAATCATCCCGACTCATGGTTTGGAAGAGCT
CAGATGGAAGAAATACTTTGCCTGCACATGCACGCCTGCCTTGCCTAGAG
GCTACGCCTGCAGAGGCTGGCGGAAGGCTGAGGGGGAGACGCCGACCAGG
GAACCGCTGTCAAACCCTCCACAGTATGAGACATCCCAGTCGATATGGTC
GTGCGGAGGAGTGCCCTGTAGCATCACCACACGTTTTTTCATTGATCGTG
CCATGATATGGTTGCCCCTCGTGAGATTTCAAAATAACCCTTTCGTTCGT
CTCCAGAAACGCGCTAGCTTCAAAGCACAGAGCTGTGAGGACTGAAGCGG
AATTATTATTGGTTTGTCGGCCCACAACCTCGTGTGCCTTGACAGGGGTT
TACGTCGGGAGATGGGAACGGGACGCTGGGGGCAGACTTCGAGGTTGGGG
AGTTGTTGCTCGCGAACGGCAGCGCTTGGCTCGCTTCGTGGGAAGAGGGC
ACTTACGTGGAGGGAAAGGTGCACAATACACGTATGTTGATATACAAAAA
ACACTCGGAATGCCCCCAGAAGATGCCGTACATGTCTCGAGCTTTTGCCT
TTTCTTGTGTTGTCGCACATAGCCTGTGACCGCGGATGAAGTCTCTGACG
TCGGGGCGTTACTTTCTGTCAAGTGCGGGGGCAGCATTAAAAAAAAACGC
CACAACACCACTACCAACACTGGCGCCGAAGACGACAACTACCCGCTATG
TTTCAGTCGTGCTCGATGACGATAACACTGTGTGGACGGTACGGTCGTAC
CCTCTCCCGTCCTGTGAAGGGGAGCCCTTCCTCGCGCCGACTTCATACGG
TGCTGCTCCGCGTTACCATCTACACCATCGACATGAAGCACACCACCACC
ACCACCACCACCATCACCACCACCTCAGTACTTCCATCGCCAAAACATCC
GGAAACACGATGAGTCCACGCCTGGACTAGATGCGCCAGTACCAGCGTCC
ACTGCGCCACACCTTTATGTATGAGAGTTTAAAAATGAAGCATGTAACAG
TGTTGACACGCGGCGGTACTTGATCGCCACACGCGCATAAATTACACTAC
CTCGTGTCGTTCGGGTTCGCCGCCCCCCCTCCTTTTTTTTCCATTTTCTT
TTTCCTTCTCTCTTTTATATATGGGTGACACTTTTCTGCAATACCGGGGG
GGAACCACAGCCCGGATACGAAGGGTCCATGCTTCAACTGGAGGCTTTGG
CACCCATCCCAGCGGGCGTTCTGCACGAGGTCACCGTGTACAGGAGCAAC
GGGATACTTGCGCAGGTTCGACAAAGGGGTACACGTTCGTTTTCCAAGGA
TTGCTTTTGAACAAGCTTTTGTATTCCATGATCGGCTGTCCCAACAGCAA
GAGGGACGCGCCAGGCAACACACATGGTAGAGAAGAAAGGGTGCCGTTGG
AAAAATGTCCCGTCCAGAGGTTTCGGAAGAAATTGCTCGTTCGTCGTTGA
ACATCCGCTTTGGTGAAGCGTAGGCAACAAGGATGAAATATTGGTCCTAT
AGGGACCCCATGGGTTATCTTCCGCAGAACAAGGTAAACCCGAGGGTACT
TTCGTTAAACCATATAACCAGAGGAAGCCCCACGCCGGGACATGTATTCC
GTCCCATATATTTGCTGCATGGCTTGCATCGTCCTCGCCCAGTGCGTATC
TAGCTGTACTTGTTGGTTCGGAAGGTGTTATCAAACGGCACTTCTTTTCG
ATTGTCCGTGGTGCCACGCCATTCTTCGGCCGCGCGCGAGACGCCAGACC
CGAGGGTTGATACTGCTGACAATTACCTTCCATGTTGTTCGTCGCCCCTT
CATGATGTTTTCTGTACATATTGCGTGCTTTCTGATGCACTCCCTCCAAA
GCCAGCAGGCTCCTACAAAAGCTTGACATTTTGTCGTGATGAAAACGAAA
AAAGATTCAGTATCATTGATTCATTCATCGAAAAAGAGAAAGGCAAAAGC
TTTCTCCCAGTTCAGTTTGACTTCGGCATCCGACTCCCGACAGTACCATC
TTCTTGCCTCGTTCTACCTCTACCTCTCACCATACCTTCTTATGATAGCA
CCCAACAGGCATCCCGTTTGCCACTTGTCGAAATAACAGCTAAACATAGC
TTCTTGTGATAGCACCCAACAGGTATCCCAATTGCCGTTTGTCGAAAAAA
CAGCTAAAGCTCTGTACTTGATCGCGCCTATCCCCTTTCGGACAAAATAC
TACTTGCACAATTGCAGTGCGGAATGCCGGAAAACGACACGTCTCCGACC
ATCTCGGTGGTGTCCGCGTCCGACCCTCCTTGGAACGCCACCGGGCGCTT
CACCTTCACGCAGACCGTCGGAACCGGATGCCGGGATCTCAATTACTGCT
CCACGCGAGGTTCGTCCCATCACACGCGTGCTGCAAACCGCTGCCACCTC
TGCTGGTGCTGCCTCTGTTCACGCGGAGCCATCCGTGTTGGACGGTGCCC
TTGCGCGTAGGTTTTTGAGTTTTTATTTTTGGTACGAGCTCTCCGAACGG
CGCGTATGGTACTTCTTCCTGTGTCGTAGCATCGCCGCCACATTTTATCG
CCTCGCATCACATCACAGTCCGCAAGTCCGCACGACTGTGGGGCTCAAAA
GTTTAGTGCAACAGGCATGGAGCTTCGGGAAGGAGACTGTGACACATTTC
ACGTGCGTTGTCGATGGCTGTTACCTTCGTGTGTCCATTGCGTCAGGTGT
GTGGAATTGATTCCCAAGGGATGTGACATTGCCCGGGCCCCCTTCACATC
ACATGCCAACCACTCTGATTGACATGGTCTATGTCTGATACCCCTTTTGC
AGGAGAATGCGACTACTGCCTCCAAAGGTGCAATTGCCT
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Coding sequence (CDS) from alignment at P-littoralis_Contig16:483541..486729+

>mRNA_P-littoralis_Contig16.121.1 ID=mRNA_P-littoralis_Contig16.121.1|Name=mRNA_P-littoralis_Contig16.121.1|organism=Pylaiella littoralis U1_48|type=CDS|length=453bp|location=Sequence derived from alignment at P-littoralis_Contig16:483541..486729+ (Pylaiella littoralis U1_48)
CCGGCTAGAAGTCTCATAGCCGGGGATAACGTGACTGTCAACCTTAAGGG
GTTTACGTCGGGAGATGGGAACGGGACGCTGGGGGCAGACTTCGAGGTTG
GGGAGTTGTTGCTCGCGAACGGCAGCGCTTGGCTCGCTTCGTGGGAAGAG
GGCACTTACGTGGAGGGAAAGCCCGGATACGAAGGGTCCATGCTTCAACT
GGAGGCTTTGGCACCCATCCCAGCGGGCGTTCTGCACGAGGTCACCGTGT
ACAGGAGCAACGGGATACTTGCGCAGTGCGGAATGCCGGAAAACGACACG
TCTCCGACCATCTCGGTGGTGTCCGCGTCCGACCCTCCTTGGAACGCCAC
CGGGCGCTTCACCTTCACGCAGACCGTCGGAACCGGATGCCGGGATCTCA
ATTACTGCTCCACGCGAGGAGAATGCGACTACTGCCTCCAAAGGTGCAAT
TGC
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