mRNA_P-littoralis_Contig16.94.2 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig16.94.2
Unique NamemRNA_P-littoralis_Contig16.94.2
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig16.94.2 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig16contigP-littoralis_Contig16:368687..371669 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog2880.D7FSQ9
PFAMsDOT1
Model size713
Max annot lvl2759|Eukaryota
Hectar predicted targeting categoryother localisation
Exons3
Evalue4.96e-07
EggNOG OGs2AVA3@1|root,2RZVU@2759|Eukaryota
DescriptionHistone methylation protein DOT1
Cds size564
COG categoryS
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789766.8614867-CDS-P-littoralis_Contig16:368686..3689761680789766.8614867-CDS-P-littoralis_Contig16:368686..368976Pylaiella littoralis U1_48CDSP-littoralis_Contig16 368687..368976 -
1680789766.879614-CDS-P-littoralis_Contig16:370992..3712661680789766.879614-CDS-P-littoralis_Contig16:370992..371266Pylaiella littoralis U1_48CDSP-littoralis_Contig16 370993..371266 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789766.8903341-UTR-P-littoralis_Contig16:371266..3712951680789766.8903341-UTR-P-littoralis_Contig16:371266..371295Pylaiella littoralis U1_48UTRP-littoralis_Contig16 371267..371295 -
1680789766.9009051-UTR-P-littoralis_Contig16:371549..3716691680789766.9009051-UTR-P-littoralis_Contig16:371549..371669Pylaiella littoralis U1_48UTRP-littoralis_Contig16 371550..371669 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig16.94.2prot_P-littoralis_Contig16.94.2Pylaiella littoralis U1_48polypeptideP-littoralis_Contig16 368687..371266 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig16.94.2

>prot_P-littoralis_Contig16.94.2 ID=prot_P-littoralis_Contig16.94.2|Name=mRNA_P-littoralis_Contig16.94.2|organism=Pylaiella littoralis U1_48|type=polypeptide|length=188bp
MAQEARAAVDVTNGDPKATTAAPAPAAPAGAPGAGEGFPGSPALDIRGCS
SSSRSDPISPPPPRTPESGSSNAAVTGSPFGGMVDRRQLFQGQCSGGGSG
STTTTSITRIRTSTTATTSSASTSSVSTSTSDDASAMPPPPSTPKAKGRR
PRSQSKTPAKRGTPKDVKVMRQGGDGVEGEGAGDDKVE
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mRNA from alignment at P-littoralis_Contig16:368687..371669-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig16.94.2 ID=mRNA_P-littoralis_Contig16.94.2|Name=mRNA_P-littoralis_Contig16.94.2|organism=Pylaiella littoralis U1_48|type=mRNA|length=2983bp|location=Sequence derived from alignment at P-littoralis_Contig16:368687..371669- (Pylaiella littoralis U1_48)
CAAGCACACCGGGGAGAACAAAGATTCCTTGACTTGGAGGGATACTCTCG
AAAGTCAGTGTTCGTTGTACACAAAGAACTCGGGGTCAAGGGGATTTCCG
TCAGCCAAAGCGGTATTCAGGTACGTTGTTGTGATTCAGGTATGCAAAGG
AATGTGTGCTCTCTCTTTATCTTGGTCTTCCCAGCTCCCGCCAAAAATCG
CGGCCACTTTATACCCCTGCAGGCAGGAGTAGCAGCGGCAGCTGCAAGCT
TGCGCGCTGCGCAGCTACCTCTCAGCAACACGGATCTTCCTGGGCACTTG
CTGTGAGTTTCAACCTGTGTGGTCCCCGCACCCTTCTCTGCTTCGTGCGC
ACTCTCTTCTCTCGCAAACCGCAGTCTAGCGCCCAGAGGGACCGGATAAG
AAAATGGCGCAAGAAGCGAGAGCCGCCGTTGATGTCACCAACGGTGACCC
AAAAGCCACAACAGCAGCACCAGCACCAGCAGCACCAGCAGGCGCACCAG
GGGCAGGAGAAGGTTTCCCGGGTAGCCCAGCGCTCGACATCAGAGGGTGT
AGCAGCAGCAGCAGAAGTGACCCCATTTCGCCACCGCCGCCTCGCACTCC
AGAGAGCGGGAGCAGCAACGCTGCTGTTACTGGGTCTCCCTTTGGTGGGA
TGGTGGATCGCCGTCAACTATTCCAAGGTGTGACGATATTTCACTGTATT
TTTGAATTGGAGATGTTGCCTTCGTTGGGCAGGAGTGGTTCGACCTACAG
CAGTACATTTGGACTTTCTGACAGACATAATATGCGATCATGTCACTCAC
GCCCCTACTTTTTTTCACATTCACAAGCTGCTCGAGCTCGCCCAGCGATG
AAAGACCGATACTGTCGTGTGCGTCAGCGAGCGATCCGCAGCAGTGACAG
ACCGTGGCTTGCTCGTCGGTCGTTGGTTTGTTTCGCTCTTCGACAGCGCA
TTAGTAAGATCTTCCGTAATGATATGATACAAAGAAGGGTATCATATTCG
TGTCAGTACTGCTTGTATGTACTCCTGGAAAAAGCCAACCGCCACCGCAC
CACGTTGGGGGCATCCTAGCGGTCGAAGGGCGCGGATCCTGTTGGTGTGT
GCGTGTGTGATTGCACACAAGGCTCTTGCTTGCCGTGTTGTTTTCCCTGA
GGATCGCCAAGGTTTTCAAAGCTTTTTCAATCTTCGTATCATACATGCAT
ACTTGCACAGGATGCATCTCACTTCGAAGTACATGGCGAGGGAAAAAATA
AAAAAACGAAAAATGGACGAAGTGCGTGGCCGATGTCTCTCCTCCTATAT
GCGAGACCCGGAGACGCGAGATTTGGGTCCGATGGCACACGTCCTCTGGT
CGCCTCTACGCCAGAGCAATTGTGATATTCCCGACAAAGATCGATCGCAC
GAACAATGCAAGGGACTCACTTTATCCTCTCCCCCCCACCAAGAAACTTT
CTGAAATGTGCACGACAAAAGCAGTGTACCTTTTTTTTACTACTCGTAGA
GGTTGCCAAGAGGTACCTCTTATCATTCGTTTGTACGAGTACCACAGCCG
TATACCGGAGTATATGATGTGATATGTTTAGGAAGTGGTTTCGCGGAGGG
GGGGCCAACGAGAACAGTTTGTTTGGCAAACACCAGCGGGAGCAATGTGT
GTGTTTGTCTGGTGCGTGTTTGCGTGTGTATATTAGACAAACCGTATGCG
TGGATAGGTCACGGTGTCTGTCCGTGTGTTGCCGTTAAGTGTTTTTAGTG
TCAGTGTCAAGCGTGAATACTCCCGGGAGTATCCCTTTTTGTCCGATGTG
TGTAGACAGTCTTACTTCATTGCATACAGTAGCGCTATGATTATTCCCGG
TCATTTGTTGTCGTTGTTGCCGTTGTTGTTCCTGCTGCTGATTTTTGTGG
TTGTTGGTGGTGGTCGCGGTGGTGGTGATGGTGTCCCCCTCCATGGCACC
ACTGCCTCCCACGGTACGATGATGTGAAACGTATCCGACGACTGCGTGGC
CTGTTTTTCACGCATGACGGTCGGTACCTGTCGGCCTACTTGTTTGCCTA
ATTCATTAATTAATGTACGTGTGGTACGATACGCGTGTGATATCATACGT
GAACAGCAATACAATAGTATCACCTGGATTTCTCGAAATCTAAGCGGGAA
TCTGAGCACTGCTGTAGGCTTCATACTTGCAACATTTTTTCTGTTGTATC
GCAGGTTTTACCACGAACAACTCCACAACTTCACCTCTTGTCATTCCCCC
CGTTTCGGTTTACGTTGTCAAGCAAAATCATTTAGCGAAATCGGCAAAAT
CGTGACCCTTACGGCAGGAGCATCTAGGTGAAATCCCCAATATGAAATCC
CCGACATGCGGGAGAATGGAAGAGAAGCCATAATCTCAGCGCCCTTTCCT
TCGAGGATATCATACATATTATTAAGCTGTAGGTAACCTGTGCGGGTGCG
TGACCACGAAACGGAACGTCGCCGAGCTTGCTTGTTTCAATTTGAACCGA
CAACAGCAGTGACCCCCCCCCCCTGCACCCCTGAAGGTTTTCTTCACGTC
AGCCTACTTCCCCCCCCCCCCCGACCCCATCCCGCCTTTTTGGTATTTCC
TGTACACGACAATGAGTCTTTTTCCCATCCATGATCCCACGACTCCCCTT
TTTTTGGTTCTTGGTTCTTGGCGTTTCGATCGGCAAACTTAAGGGCAATG
CAGCGGCGGTGGCAGCGGTAGCACCACCACCACCAGCATAACCAGAATCA
GAACCAGCACCACCGCCACCACCAGCAGCGCTAGCACCAGCAGCGTGAGC
ACCAGCACCAGCGACGACGCCAGCGCGATGCCCCCGCCCCCGTCCACACC
CAAGGCCAAGGGCCGACGCCCGAGGTCCCAGTCAAAAACGCCCGCCAAGC
GCGGGACACCGAAAGATGTCAAGGTCATGCGTCAGGGGGGCGACGGCGTC
GAAGGGGAGGGCGCGGGTGACGATAAGGTGGAG
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Coding sequence (CDS) from alignment at P-littoralis_Contig16:368687..371669-

>mRNA_P-littoralis_Contig16.94.2 ID=mRNA_P-littoralis_Contig16.94.2|Name=mRNA_P-littoralis_Contig16.94.2|organism=Pylaiella littoralis U1_48|type=CDS|length=564bp|location=Sequence derived from alignment at P-littoralis_Contig16:368687..371669- (Pylaiella littoralis U1_48)
ATGGCGCAAGAAGCGAGAGCCGCCGTTGATGTCACCAACGGTGACCCAAA
AGCCACAACAGCAGCACCAGCACCAGCAGCACCAGCAGGCGCACCAGGGG
CAGGAGAAGGTTTCCCGGGTAGCCCAGCGCTCGACATCAGAGGGTGTAGC
AGCAGCAGCAGAAGTGACCCCATTTCGCCACCGCCGCCTCGCACTCCAGA
GAGCGGGAGCAGCAACGCTGCTGTTACTGGGTCTCCCTTTGGTGGGATGG
TGGATCGCCGTCAACTATTCCAAGGGCAATGCAGCGGCGGTGGCAGCGGT
AGCACCACCACCACCAGCATAACCAGAATCAGAACCAGCACCACCGCCAC
CACCAGCAGCGCTAGCACCAGCAGCGTGAGCACCAGCACCAGCGACGACG
CCAGCGCGATGCCCCCGCCCCCGTCCACACCCAAGGCCAAGGGCCGACGC
CCGAGGTCCCAGTCAAAAACGCCCGCCAAGCGCGGGACACCGAAAGATGT
CAAGGTCATGCGTCAGGGGGGCGACGGCGTCGAAGGGGAGGGCGCGGGTG
ACGATAAGGTGGAG
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