mRNA_P-littoralis_Contig16.57.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig16.57.1
Unique NamemRNA_P-littoralis_Contig16.57.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
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BLAST of mRNA_P-littoralis_Contig16.57.1 vs. uniprot
Match: A0A6H5KZ43_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KZ43_9PHAE)

HSP 1 Score: 70.1 bits (170), Expect = 1.590e-13
Identity = 33/50 (66.00%), Postives = 40/50 (80.00%), Query Frame = 2 
Query:    2 STMTRPDITNAVRAVARYAHSPTARLWKSIRKILAYLNGTRSLGITYVRG 151
            ST +RPD++ AVRAVAR+AH+P  R W +I+KIL YL GTR LGITY RG
Sbjct:    5 STFSRPDVSFAVRAVARHAHAPAKRHWDAIQKILGYLKGTRDLGITYQRG 54
[Close]
BLAST of mRNA_P-littoralis_Contig16.57.1 vs. uniprot
Match: A0A6H5KBH1_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein (Fragment) n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KBH1_9PHAE)

HSP 1 Score: 70.1 bits (170), Expect = 3.630e-13
Identity = 33/50 (66.00%), Postives = 40/50 (80.00%), Query Frame = 2 
Query:    2 STMTRPDITNAVRAVARYAHSPTARLWKSIRKILAYLNGTRSLGITYVRG 151
            ST +RPD++ AVRAVAR+AH+P  R W +I+KIL YL GTR LGITY RG
Sbjct:  118 STFSRPDVSFAVRAVARHAHAPAKRHWDAIQKILGYLKGTRDLGITYQRG 167
[Close]
BLAST of mRNA_P-littoralis_Contig16.57.1 vs. uniprot
Match: A0A6H5KJ49_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KJ49_9PHAE)

HSP 1 Score: 70.1 bits (170), Expect = 6.480e-13
Identity = 33/50 (66.00%), Postives = 40/50 (80.00%), Query Frame = 2 
Query:    2 STMTRPDITNAVRAVARYAHSPTARLWKSIRKILAYLNGTRSLGITYVRG 151
            ST +RPD++ AVRAVAR+AH+P  R W +I+KIL YL GTR LGITY RG
Sbjct:  120 STFSRPDVSFAVRAVARHAHAPAKRHWDAIQKILGYLKGTRDLGITYQRG 169
[Close]
BLAST of mRNA_P-littoralis_Contig16.57.1 vs. uniprot
Match: A0A6H5KPN5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KPN5_9PHAE)

HSP 1 Score: 70.1 bits (170), Expect = 7.270e-13
Identity = 33/50 (66.00%), Postives = 40/50 (80.00%), Query Frame = 2 
Query:    2 STMTRPDITNAVRAVARYAHSPTARLWKSIRKILAYLNGTRSLGITYVRG 151
            ST +RPD++ AVRAVAR+AH+P  R W +I+KIL YL GTR LGITY RG
Sbjct:   50 STFSRPDVSFAVRAVARHAHAPAKRHWDAIQKILGYLKGTRDLGITYQRG 99
[Close]
BLAST of mRNA_P-littoralis_Contig16.57.1 vs. uniprot
Match: A0A6H5KPT0_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KPT0_9PHAE)

HSP 1 Score: 70.1 bits (170), Expect = 7.350e-13
Identity = 33/50 (66.00%), Postives = 40/50 (80.00%), Query Frame = 2 
Query:    2 STMTRPDITNAVRAVARYAHSPTARLWKSIRKILAYLNGTRSLGITYVRG 151
            ST +RPD++ AVRAVAR+AH+P  R W +I+KIL YL GTR LGITY RG
Sbjct:  118 STFSRPDVSFAVRAVARHAHAPAKRHWDAIQKILGYLKGTRDLGITYQRG 167
[Close]
BLAST of mRNA_P-littoralis_Contig16.57.1 vs. uniprot
Match: A0A6H5KCA5_9PHAE (Uncharacterized protein n=4 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KCA5_9PHAE)

HSP 1 Score: 70.1 bits (170), Expect = 7.600e-13
Identity = 33/50 (66.00%), Postives = 40/50 (80.00%), Query Frame = 2 
Query:    2 STMTRPDITNAVRAVARYAHSPTARLWKSIRKILAYLNGTRSLGITYVRG 151
            ST +RPD++ AVRAVAR+AH+P  R W +I+KIL YL GTR LGITY RG
Sbjct:   46 STFSRPDVSFAVRAVARHAHAPAKRHWDAIQKILGYLKGTRDLGITYQRG 95
[Close]
BLAST of mRNA_P-littoralis_Contig16.57.1 vs. uniprot
Match: A0A6H5KWI5_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KWI5_9PHAE)

HSP 1 Score: 69.7 bits (169), Expect = 7.680e-13
Identity = 35/50 (70.00%), Postives = 40/50 (80.00%), Query Frame = 2 
Query:    2 STMTRPDITNAVRAVARYAHSPTARLWKSIRKILAYLNGTRSLGITYVRG 151
            ST +RPDI+ AVRAVAR+AH+P  R WK+I KILAYL  TR LGITY RG
Sbjct:  134 STFSRPDISFAVRAVARHAHAPAERHWKAIVKILAYLKETRDLGITYERG 183
[Close]
BLAST of mRNA_P-littoralis_Contig16.57.1 vs. uniprot
Match: A0A6H5KTI8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KTI8_9PHAE)

HSP 1 Score: 69.7 bits (169), Expect = 8.300e-13
Identity = 35/50 (70.00%), Postives = 40/50 (80.00%), Query Frame = 2 
Query:    2 STMTRPDITNAVRAVARYAHSPTARLWKSIRKILAYLNGTRSLGITYVRG 151
            ST +RPDI+ AVRAVAR+AH+P  R WK+I KILAYL  TR LGITY RG
Sbjct:   92 STFSRPDISFAVRAVARHAHAPAERHWKAIVKILAYLKETRDLGITYERG 141
[Close]
BLAST of mRNA_P-littoralis_Contig16.57.1 vs. uniprot
Match: A0A6H5KCK9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KCK9_9PHAE)

HSP 1 Score: 69.7 bits (169), Expect = 8.510e-13
Identity = 35/50 (70.00%), Postives = 40/50 (80.00%), Query Frame = 2 
Query:    2 STMTRPDITNAVRAVARYAHSPTARLWKSIRKILAYLNGTRSLGITYVRG 151
            ST +RPDI+ AVRAVAR+AH+P  R WK+I KILAYL  TR LGITY RG
Sbjct:   40 STFSRPDISFAVRAVARHAHAPAERHWKAIVKILAYLKETRDLGITYERG 89
[Close]
BLAST of mRNA_P-littoralis_Contig16.57.1 vs. uniprot
Match: A0A6H5JMP9_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JMP9_9PHAE)

HSP 1 Score: 70.1 bits (170), Expect = 1.150e-12
Identity = 33/50 (66.00%), Postives = 40/50 (80.00%), Query Frame = 2 
Query:    2 STMTRPDITNAVRAVARYAHSPTARLWKSIRKILAYLNGTRSLGITYVRG 151
            ST +RPD++ AVRAVAR+AH+P  R W +I+KIL YL GTR LGITY RG
Sbjct:  176 STFSRPDVSFAVRAVARHAHAPAKRHWDAIQKILGYLKGTRDLGITYQRG 225
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig16.57.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KZ43_9PHAE1.590e-1366.00Uncharacterized protein n=2 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KBH1_9PHAE3.630e-1366.00Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5KJ49_9PHAE6.480e-1366.00Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5KPN5_9PHAE7.270e-1366.00Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KPT0_9PHAE7.350e-1366.00Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5KCA5_9PHAE7.600e-1366.00Uncharacterized protein n=4 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KWI5_9PHAE7.680e-1370.00Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5KTI8_9PHAE8.300e-1370.00Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KCK9_9PHAE8.510e-1370.00Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JMP9_9PHAE1.150e-1266.00Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig16contigP-littoralis_Contig16:182121..182319 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog37682.EMT16342
PFAMsNB-ARC
Model size199
Max annot lvl2759|Eukaryota
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Evalue2.15e-07
EggNOG OGsCOG2801@1|root,KOG4658@1|root,KOG0017@2759|Eukaryota,KOG4658@2759|Eukaryota
DescriptionADP binding
Cds size159
COG categoryS
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789765.2635624-UTR-P-littoralis_Contig16:182120..1821271680789765.2635624-UTR-P-littoralis_Contig16:182120..182127Pylaiella littoralis U1_48UTRP-littoralis_Contig16 182121..182127 +
1680789765.2820208-UTR-P-littoralis_Contig16:182286..1823191680789765.2820208-UTR-P-littoralis_Contig16:182286..182319Pylaiella littoralis U1_48UTRP-littoralis_Contig16 182287..182319 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789765.2735355-CDS-P-littoralis_Contig16:182127..1822861680789765.2735355-CDS-P-littoralis_Contig16:182127..182286Pylaiella littoralis U1_48CDSP-littoralis_Contig16 182128..182286 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig16.57.1prot_P-littoralis_Contig16.57.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig16 182128..182286 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig16.57.1

>prot_P-littoralis_Contig16.57.1 ID=prot_P-littoralis_Contig16.57.1|Name=mRNA_P-littoralis_Contig16.57.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=53bp
MTRPDITNAVRAVARYAHSPTARLWKSIRKILAYLNGTRSLGITYVRGRV
LV*
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mRNA from alignment at P-littoralis_Contig16:182121..182319+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig16.57.1 ID=mRNA_P-littoralis_Contig16.57.1|Name=mRNA_P-littoralis_Contig16.57.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=199bp|location=Sequence derived from alignment at P-littoralis_Contig16:182121..182319+ (Pylaiella littoralis U1_48)
CTCCACGATGACTAGGCCTGACATAACCAATGCTGTACGAGCGGTAGCAC
GGTATGCTCACTCACCGACTGCAAGGCTTTGGAAGTCGATCAGGAAAATC
CTTGCTTACTTGAACGGGACAAGGAGTCTCGGTATTACCTACGTACGGGG
TCGGGTCTTGGTCTAGAGGTGTACGCAGATTCCGACTATGCCAGTAAAG
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Coding sequence (CDS) from alignment at P-littoralis_Contig16:182121..182319+

>mRNA_P-littoralis_Contig16.57.1 ID=mRNA_P-littoralis_Contig16.57.1|Name=mRNA_P-littoralis_Contig16.57.1|organism=Pylaiella littoralis U1_48|type=CDS|length=159bp|location=Sequence derived from alignment at P-littoralis_Contig16:182121..182319+ (Pylaiella littoralis U1_48)
ATGACTAGGCCTGACATAACCAATGCTGTACGAGCGGTAGCACGGTATGC
TCACTCACCGACTGCAAGGCTTTGGAAGTCGATCAGGAAAATCCTTGCTT
ACTTGAACGGGACAAGGAGTCTCGGTATTACCTACGTACGGGGTCGGGTC
TTGGTCTAG
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