mRNA_P-littoralis_Contig16.12.7 (mRNA) Pylaiella littoralis U1_48
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Overview
Homology
BLAST of mRNA_P-littoralis_Contig16.12.7 vs. uniprot
Match: D7FYF0_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FYF0_ECTSI) HSP 1 Score: 725 bits (1871), Expect = 1.270e-221 Identity = 906/1909 (47.46%), Postives = 1009/1909 (52.85%), Query Frame = 1
Query: 91 QQPAARRP--PAGDPRAPGPARLGAAVDVIVGHLRRLVLLQAWAKWQPKLTQGEVASRILERQRLRLEGGVSSGLGQVTTGGRWGRRRLTPGKDTDGYFPDGCD------------------------EEPPPTAGSVLHPAAVGGDAVGIGGGGRGGKEPGGASGASRPEARGRTRLRPPCAGKATTSVSSSIPRVSGGXXXXSDGGTGSVRCLSSPAVVTSGTPGFGSARNTSRRSSTGTSGDSWTATA----------AALTQTGDRKRRDDERGL---------GPSKGVL----------------SQPPGGAAAATPTANTSGPSMLTMQTCFRQEREAFIRDLQVLHRQLDAKDKDHARRQRESQAACAQARAETRSAIERTVLLQKEAEDAAXXXXXXXXXXSVAVEGLDRQTTEAETLRARLRHATRLHKEQMDVERRLKAAGAEESSAERRRLESAALTARKGLSDGRRGWAAEKDTLLAAVKEASQRADLFGRERAEAKAHAALLEERLQQTLEREASLNEEVEALTGSARDGERRVARSEADAARVRAAAAAQEEAFLESVKDLEKRAARAEIMQGGEQATREDLHAMLEEARQEALATSSEAQRKLSAANLREVSLGQETSALRAEVEAFRRRAVAAEALIGSADASTGDIGARLEEALSENRRLAAAXXEEKALLERQWRRREEGWQLALVRARRGENAAVNDEPSASNKAVAEAG-----VLAEVQELREAMMRLSSDKERLLDQL----SRSTTTVATSTMTAAENSRGREGDRRRTPRPSESADDYWTEGDQVDANDDPRDRRGGVEAEGDTGGEEGELEEXXXXXXXXXXXXERGRREGRRGVRTRNVHACTPAGEGRRESRRGCAVGDGSDASSDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXMPRGGPAPVPSRLPPRTSKTSLGASXXXXXXWSAARPLGRSLAAAALLRASLERERNLRRWQHDSLVDVLLEGNVTVDRHRXXXXXXXXACSPSNALAPAIGAAPEGLRGANDAAAXXXXXXXXXXXXXXQRNCDFEKDREIEENGTIRGHVEQEXXXXXXXXXXXXXXXXAWHDILAVLASFVQSHRGCRRGPNRDGSERPRHGHVHDSPRRQRARGRSSTACASSRPSGGIGSCAARDCGESGGSHRGEKERGARCSPGPCRSPSPPPSFPRRQRQPRRTGGSGGGHGRGGVRVSGTGGADGRPDAGRRPSSPXXXXXXXXXXXXXXXD-----------VKTFSGALAAALRELLSSTLGVPEDGVKEAPLPELVRALQREWEALLEGLSVMQDEVDLARRQAANVAATATATSPRHTAEEGLRKSEQCIAELEATLAEAMKAEVERRVAAEAAXXXXXNALQTSERDRSEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSSSAAAEXXXXXXXXXXXXRFRRSLEAAVREGTDEAXXXXXXXXXXXXRAEVAEGQLRELEDKLKAVGGAGKEELEEEXXXSEGDEERVWREREVGREAGRREAQERVEALEAALEKLAETGSAAERLSKEQLEIARELSTERDELVQENERSAARLDQLTAALQEQREGKARLSNQLLDRERGLEALRAQGDIERVKVARLQAEVGKAQGVCREMTDRLLELQATQDELRTARSSLEQAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXHLEARVDALRRQLDQVPNDLMVAHAEKRVLQGALDQAERQAADTEASTAAELRRRDADARSFASAAALQQERCGERLREQALTIHQLTLQGFSAEASAQAQXXXXXXXXXXXXXXXXXXXXXXXXXSPVVAA-----------AVGAGLPARAAAAERKALPAPRRSYYRYD 5541
Q P+ RR P + APGPARLGAAVD IVGHLRRLVLLQAWAKWQPKLTQGEVA+RILERQRLRLEG G + P + G L A GGD G G G RGRTRLRP G + +S+ GG G VRC SSPA + G +AR R S G+ G + A A Q GD RR D L G + G S P G +AAT G MLTMQTCFRQERE+FIRDLQVLHRQLDAKD+DHARR E QAA + ARAE R+A ER L+KE XXXXXXXXX VA E LDRQT AETLRARLRHA RLHKEQM+VE R + A A ERRRLES+ALTARK LSD RR WAAEKDTL+AAV+EA QRADL E EAK+ AALL ERLQQTLEREA+LN EVE+L GSARDGERRVAR+ ADAAR RAAAAAQEEAFLESVK LE+RAARAE+MQ GE+ATREDL A+LEEARQ +L+ SS+AQR LSAANLR V LGQE +A RAE E RLEEALSE+RRLAAA EE+ L+RQWRRREE W+LAL RARRGE A +LAEV+ELREA+ RLS DKERLLD+L S + V D W +G++ +RG A+GD GE++ X G R V + A +R S+RG V G+ XXXXXXXXXXXXXXXXXXXXXXXXXXXX MPRGGPAP PSR PR+ LG+ W AAR GRS+AAAALLR SL RER+LRR +H+SL+ + XXXXXXXX XXXXXXXXXXXXXX XXXXXXXXXX AW+D L+ + + ++S R+G + RS + +S G D S G R SP XXXXXXXXXXXXXXX V FSG LA ALRELLSSTL VPE+ ++EAPLPELVRALQREWEALLEGLS MQ+EV+LAR+QA ++AA++++ T R E +AE A+ ERR A LEAA+ XXXXXXXX RA L E ED LK G G R A VEALEAALEKLAE GS AE LSKEQLEI R+LS ERDELV+ENERS+ RLDQLT ALQEQRE K RL+NQLLDRERGLEALRAQGD+ERVK ARLQ EVGKAQ VCREM+DRLLELQATQDELR R L+QAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX HLEARV+AL+RQLD EA+TAAELRRRDADAR+ ASAAALQQ RC ERLREQALTIHQLTL+GFSAEA+ XXXXXXXXXXXXXXXXXXXXXXXXX AVG G P + K LPAPRR YY YD
Sbjct: 8 QPPSGRRQLRPGPEAPAPGPARLGAAVDAIVGHLRRLVLLQAWAKWQPKLTQGEVATRILERQRLRLEGRGDEASGAEPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEAEGRQSAPGSDGETLARAGGGGDQEGTPGAG----------------VRGRTRLRPSGVGGIGATTASATSTALGGSG-------GVVRCRSSPAGASRG---LNAAREVFRGSG-GSVGRAAGGRAXXXXXXXXXXATEAQQGDGGRRTDSMVLQKQHKQVHAGDAHGQARTNGRSSNTHAAARHSSTTPAGGSAAT----VDGTRMLTMQTCFRQERESFIRDLQVLHRQLDAKDRDHARRDAEGQAAFSGARAEARAARERAASLRKEXXXXXXXXXXXXXXVGVAAEELDRQTAAAETLRARLRHAERLHKEQMEVEHRQQKAAAXXXXXERRRLESSALTARKSLSDARRDWAAEKDTLIAAVREAGQRADLALAEGTEAKSRAALLGERLQQTLEREAALNAEVESLAGSARDGERRVARAVADAARARAAAAAQEEAFLESVKGLEERAARAEMMQDGERATREDLQALLEEARQASLSASSDAQRDLSAANLRAVDLGQEAAAARAEAEXXXXXXXXXXXXXXXXXXXXXXXXXRLEEALSESRRLAAASAEEREALDRQWRRREEEWRLALERARRGEGAGGXXXXXXXXXXXXXXXXXXXLLLAEVEELREAVDRLSRDKERLLDRLLSSGSSPSEVVXXXXXXXXXXXXXXXXXXXXXXXXXXXPPDEWRDGERCSLGKGDTRQRGRGRADGD-----GEIDRGSEGADVGREEXXXXXXXXXXGRGARGVARSSVAEAEKRHSQRGGNVDGGTSXXX-----------XXXXXXXXXXXXXXXXXXXXXXXXXXXXLLMPRGGPAPTPSRFTPRSGAVGLGSGGGGPGRWVAARSAGRSVAAAALLRTSLARERSLRRREHESLLGLXXXXXXXXXXXXXXXXXXXXXXXXXXXX--------XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAPLSWEAWNDALSAIEALLRS---SRQGXXXXXXXXXXXXXXXXXXXXXXSSARSMPSSCTSLVPSEDGRGDDNDAYSRPPSVETLAHSGGRRSPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVAAFSGVLATALRELLSSTLCVPEERLREAPLPELVRALQREWEALLEGLSAMQEEVNLARQQARDLAASSSS----ETGPAAPRAGEAAVAE--------RLAKAERRAA----------------------------------------------------------------------------ELEAAL---------AXXXXXXXXVRAXARAAAL-EAEDTLKTAGKGGD-----------------------------RGAFFVVEALEAALEKLAEAGSEAEALSKEQLEITRQLSAERDELVEENERSSTRLDQLTTALQEQREEKGRLTNQLLDRERGLEALRAQGDVERVKAARLQEEVGKAQEVCREMSDRLLELQATQDELRDTRQGLDQAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRHLEARVNALQRQLD------------------------------EAATAAELRRRDADARNMASAAALQQRRCDERLREQALTIHQLTLEGFSAEAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAVGVGTPGQ------KVLPAPRRGYYSYD 1695
BLAST of mRNA_P-littoralis_Contig16.12.7 vs. uniprot
Match: A0A6H5KA79_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KA79_9PHAE) HSP 1 Score: 715 bits (1846), Expect = 4.470e-217 Identity = 839/1873 (44.79%), Postives = 966/1873 (51.58%), Query Frame = 1
Query: 94 QPAARRP--PAGDPRAPGPARLGAAVDVIVGHLRRLVLLQAWAKWQPKLTQGEVASRILERQRLRLEGGVSSGLGQVTTGGRWGRRRLTPGKDTDGYFPDGCDEEP------PPTAGSVLHPAAVGGDAVGIGGGGRGGKEPGGASGASRPEARGRTRLRPPCAGKATTSVSSSIPRVSGGXXXXSDGGTGSVRCLSSPAVVTSGTPGFGSARNTSRRSSTGTSGDSWTATAAALTQTGDRKRRDDERGLGPSKGVL--------SQPPGGAA---------AATPTANTS-------GPSMLTMQTCFRQEREAFIRDLQVLHRQLDAKDKDHARRQRESQAACAQARAETRSAIERTVLLQKEAEDAAXXXXXXXXXXSVAVEGLDRQTTEAETLRARLRHATRLHKEQMDVERRLKAAGAEESSAERRRLESAALTARKGLSDGRRGWAAEKDTLLAAVKEASQRADLFGRERAEAKAHAALLEERLQQTLEREASLNEEVEALTGSARDGERRVARSEADAARVRAAAAAQ------EEAFLESVKDLEKRAARAEIMQGGEQATREDLHAMLEEARQEALATSSEAQRKLSAANLREVSLGQETSALRAEVEAFRRRAVAAEALIGSADASTGDIGARLEEALSENRRLAAAXXEEKALLERQWRRREEGWQLALVRARRGENAAVNDEPSASNKAVAEAG-----VLAEVQELREAMMRLSSDKERLLDQLSRSTTTVATSTMTAAENSRGREGDR--RRT------------PRPSESADDYWTEGDQVDANDDPRDRRGGVEAEGDTGGEEGELEEXXXXXXXXXXXXERGRREGRRGVRTRNVHACTPAGEG------RRESRRGCAVGDGSDASSDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXMPRGGPAPVPSRLPPRTSKTSLGASXXXXXXWSAARPLGRSLAAAALLRASLERERNLRRWQHDSLVDVLLEGNVTVDRHRXXXXXXXXACSPSNALAPAIGAAPEGLRGANDAAAXXXXXXXXXXXXXXQRNCDFEKDREIEENGTIRGHVEQEXXXXXXXXXXXXXXXXAWHDILAVLASFVQSHR----GCRRGPNRDGSER-----PRHGHVHDSPRRQRARG--RSSTACASSRPSGGIGSCAARDCGESGG--------------------------------------SHRGEKERGARCSPGPCRSPSPPPSFPRRQRQPRRTGGSGGGHGRGGVRVSGTGGADGRPDAGRRPSSPXXXXXXXXXXXXXXXDVKTFSGALAAALRELLSSTLGVPEDGVKEAPLPELVRALQREWEALLEGLSVMQDEVDLARRQAANVAATATA----TSPRH---TAEEGLRKSEQCIAELEATLAEAMKAEVERRVAAEAAXXXXXNALQTSERDRSEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSSSAAAEXXXXXXXXXXXXRFRRSLEAAVREGTDEAXXXXXXXXXXXXR-AEVAEGQLRELEDKLKAVGGAGKEELEEEXXXSEGDEERVWREREVGREAGRREAQERVEALEAALEKLAETGSAAERLSKEQLEIARELSTERDELVQENERSAARLDQLTAALQEQREGKARLSNQLLDRERGLEALRAQGDIERVKVARLQAEVGKAQGVCREMTDRLLELQATQDELRTARSSLEQAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXHLEARVDALRRQLDQVPNDLMVAHAEKRVLQGALDQAERQAADTEASTAAELRRRDADARSFASAAALQQERCGERLREQALTIHQLTLQGFSAEASA 5352
+P+ RR P + APGP RLGAAVD IVGHLRRLVLLQAWAKWQPKLTQ RLRLEG GG G G + D+E P + G L A+ GGD G+ G G RGR RLRP G+ ++++S + G G G VRC SSPA + G A +S S+ +G AA TQ GD + RGL L ++P G ++ TPT+ + G SMLTMQTCFRQERE+FIRDLQVLHRQLDAKD+DHARR ESQAA ++ RAE R+A ER L+KE XXXXXXX VA E LDRQ AETLRARLRHA RLHKEQM+VE R + A AE AERRRLES+ALTARK LSD RR WAAEKDTL+AAV+EA QRADL E +EAK+ AALLEERLQQTLEREA+LN EVE+L GSARDGERRVAR+ ADAAR RAAAAAQ EEA+LESVK LE+RA+RAE+MQ GE+ATREDL A+LEEARQ +L+ SS+AQR LSAAN+R V LGQE +A RAE E+FRR RLEEALSE+RRLAAA EE+ L+RQWRRREE W+LAL RARR +LAEV++LREA+ RLS DKERLLD+L S D RR PRP ++ W EG++ RGG G G + + GR EG A +R ++RG V G + XXXXXXXXXXXXXXXXXX MPRGGPAP PSRL PR+ SLG+ W AAR SL RER+LRR +H+SL+ +L NV XXXXXXXX + G AA XXXXXXXXXX + E D + E XXXXXXXXXX AW D L+ + + ++S R GC+ G DGSE G RR R RG RS G G C + GG XXXXXXXXXXX +V FSG LA ALRELLSSTLGVPE+ + EAPLPELVRALQREWEALLEGLS MQ+EV+LAR+QA ++AA+A++ +PR E L K+E+ AELEA LA R A+AA +AL+TS XXXXXXXXXXXXXXXXXXXX XXXXXXXXXXXX A R+G EA R AE AE ++RELE +L AV LAE GS AE LSKEQLEI R+LS ERDELV+ENER + RLDQLT ALQEQRE K RL+NQLLDRERGLEALRAQ D+ERVK ARLQ EVGKAQ VCREM+ RLLELQATQDELR R L+QA XXXXXXXXXXXXXXXXXX HLEARV+AL+RQLD+VPNDL+VAHAEKRVLQGAL++A+ AAD EA+TAAELRRRD RLREQALTIHQLTL+GFSAEA+A
Sbjct: 8 KPSGRRQSRPGPEAPAPGPVRLGAAVDAIVGHLRRLVLLQAWAKWQPKLTQ-----------RLRLEG----------RGGELGH-----GAACEEXXXXXXDDEAEGRQSAPGSDGETLARASGGGDQEGVPGAG----------------VRGRARLRP--TGRRIGALTASSRSTALG------GSGGVVRCRSSPAGTSRGLNADREAFRSSGGSARRAAGGGVAGAMAAETQQGDGECGTASRGLQKQHKQLHAGDAHGETRPNGRSSNTHTAARHSCTTPTSGIAAAATGGDGTSMLTMQTCFRQERESFIRDLQVLHRQLDAKDRDHARRDAESQAAFSRVRAEARAARERAASLRKETXXXXXXXXXXXARVGVAAEELDRQAAAAETLRARLRHAERLHKEQMEVEHRQQKAAAEXXXAERRRLESSALTARKSLSDARRDWAAEKDTLIAAVREAGQRADLALAEGSEAKSRAALLEERLQQTLEREAALNAEVESLAGSARDGERRVARAVADAARARAAAAAQVGPGRGEEAYLESVKGLEERASRAEMMQHGERATREDLQALLEEARQNSLSASSDAQRDLSAANVRAVDLGQEVAAARAEAESFRRXXXXXXXXXXXXXXXXXXXXXRLEEALSESRRLAAASAEEREALDRQWRRREEEWRLALERARRXXXXXXXXXXXXXXXXXXXXXXXXVLLLAEVEQLREAVNRLSRDKERLLDRLLSSGXXXXXXXXXXXXXXXXXXXDHEDRRCHRXXXXXXXXXRPRPGGPPNE-WREGERCSLG------RGGTRQRG-----RGRAADGDGEIDRGGERADAGREEGEXXXXXXXXRAARGVARSFVTEAEKRHNQRGGNVNGGPSSGE-----------------RSRDXXXXXXXXXXXXXXXXXXLLMPRGGPAPTPSRLTPRSGAVSLGSGGGGPGRWVAAR-------------TSLARERSLRRREHESLLGLLRRENVXXXXXXXXXXXXXXXXXXTPVFGTGDGC---------PAAQXXXXXXXXXXEEFGEEELRAE-DLDPEXXXXXXXXXXXXXXXXXXXXXXAPLSWGAWSDALSAIEALLRSSRQGDGGCQVG---DGSEGGGDAGDHRGXXXXRGRRXRHRGEWRSXXXXXXXXXGTGAGVCDGKSA--DGGVDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKDQEEVAAFSGVLATALRELLSSTLGVPEERLGEAPLPELVRALQREWEALLEGLSTMQEEVNLARQQARDLAASASSEARPAAPRAGEAAVAERLAKAERRAAELEAALAXXXXXXXGVRAEAKAAALEAEDALKTS------------------XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXATRRQGEREASAEEERVSRAARRRAEAAERRVRELEGELAAVAAXXX---------------XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLAEAGSEAEALSKEQLEITRQLSAERDELVEENERLSTRLDQLTTALQEQREEKGRLTNQLLDRERGLEALRAQSDVERVKAARLQEEVGKAQEVCREMSGRLLELQATQDELRDTRQGLDQASKDLETLRRSKDNLAGGWDEAAXXXXXXXXXXXXXXXXXXRANAAEPLAEEESRRARHLEARVNALQRQLDEVPNDLLVAHAEKRVLQGALERAKSDAADVEAATAAELRRRDXXXXXXXXXXXXXXXXXXXRLREQALTIHQLTLEGFSAEAAA 1740 The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig16.12.7 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 2
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_P-littoralis_Contig16.12.7 >prot_P-littoralis_Contig16.12.7 ID=prot_P-littoralis_Contig16.12.7|Name=mRNA_P-littoralis_Contig16.12.7|organism=Pylaiella littoralis U1_48|type=polypeptide|length=2010bp MTQQPAARRPPAGDPRAPGPARLGAAVDVIVGHLRRLVLLQAWAKWQPKLback to top mRNA from alignment at P-littoralis_Contig16:33788..50574+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_P-littoralis_Contig16.12.7 ID=mRNA_P-littoralis_Contig16.12.7|Name=mRNA_P-littoralis_Contig16.12.7|organism=Pylaiella littoralis U1_48|type=mRNA|length=16787bp|location=Sequence derived from alignment at P-littoralis_Contig16:33788..50574+ (Pylaiella littoralis U1_48)back to top Coding sequence (CDS) from alignment at P-littoralis_Contig16:33788..50574+ >mRNA_P-littoralis_Contig16.12.7 ID=mRNA_P-littoralis_Contig16.12.7|Name=mRNA_P-littoralis_Contig16.12.7|organism=Pylaiella littoralis U1_48|type=CDS|length=6030bp|location=Sequence derived from alignment at P-littoralis_Contig16:33788..50574+ (Pylaiella littoralis U1_48)back to top |