mRNA_P-littoralis_Contig16.10.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig16.10.1
Unique NamemRNA_P-littoralis_Contig16.10.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
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BLAST of mRNA_P-littoralis_Contig16.10.1 vs. uniprot
Match: A0A6H5K8Z3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K8Z3_9PHAE)

HSP 1 Score: 479 bits (1232), Expect = 3.460e-156
Identity = 290/426 (68.08%), Postives = 308/426 (72.30%), Query Frame = 2 
Query:  653 ACWHMKGRLTNTATGQTIALVEGVELARSLAFETAPSRKAAAAAADRRQKSLRSSKVAVGGKALVPAAAALAEGE-GELEVDKALKPGLWTAFGVLACSKFFMYQARMYDPATGEPMDHFRNTPVEKKQAVRTYERFSQVVSHLLQPNGRVLVVSEWGGRSVKAETANNNGVEEVXXXXXXXXXXXXXXSRLSN-----GKDGSSPPHAPRRVFNLHFFVEARTPKEERELKRWQERPGAKWIAFGTPPPRAHGCKEVYSYITGRGRGGEGKAGXXXXXXXXXXXXKLKLPWFSSRKNGMPGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGLMSYTRYGECPTWYGTGRMCGLDVQAKQVDSFASLPAKLRKKVLEIDPEFEAGPPGTMKEVRRAAREKRLEREEKRRRKG-RSLRGLF 1909
            ACWHM+GRLTNTATGQTIALVEGVELARSLAFETA SRK           S R  K   GG               GELEVDKALKPG WTAFG LA SKFFMYQ    DPATGEPMDHFRNTPVEKKQAVRTYERFSQVVSHLLQPNGRVLVVSEWGGRSVKAETANNNGVEE+                + N      +  SSPP   RRVFNLHFFVEARTPKEERELKRWQERPGA+WIAFG+PPPRAHGCKEVYSY+TGR R G G+ G            K +LPW  +R                          XXXXXXXXXXXXXX GLMSYTRYGECPTWYGTGRMCGLDVQA++VDSFASLPAKLR++VL++DPEFEAGPPGTM EVRRAARE+RLEREE+RRRKG RSLR  F
Sbjct:  230 ACWHMRGRLTNTATGQTIALVEGVELARSLAFETASSRK-----------SSRGPKRPAGGXXXXXXXXXXXXXXXGELEVDKALKPGRWTAFGALATSKFFMYQ----DPATGEPMDHFRNTPVEKKQAVRTYERFSQVVSHLLQPNGRVLVVSEWGGRSVKAETANNNGVEEIEGGRGGWFPGGARDLGIVNDERSLARSSSSPP---RRVFNLHFFVEARTPKEERELKRWQERPGARWIAFGSPPPRAHGCKEVYSYVTGREREG-GRGGNERKEEGK----KDRLPWAWNRNKAASDAREGDDDAEGVDDGTVALASXXXXXXXXXXXXXXGGLMSYTRYGECPTWYGTGRMCGLDVQARRVDSFASLPAKLREEVLKVDPEFEAGPPGTMGEVRRAAREQRLEREEERRRKGKRSLRRPF 632
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BLAST of mRNA_P-littoralis_Contig16.10.1 vs. uniprot
Match: D7FYF1_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FYF1_ECTSI)

HSP 1 Score: 469 bits (1206), Expect = 1.160e-155
Identity = 287/421 (68.17%), Postives = 302/421 (71.73%), Query Frame = 2 
Query:  665 MKGRLTNTATGQTIALVEGVELARSLAFETAPSRKAAAAAADRRQKSLRSSKVAVGGKALVPAAAALAEGEGELEVDKALKPGLWTAFGVLACSKFFMYQARMYDPATGEPMDHFRNTPVEKKQAVRTYERFSQVVSHLLQPNGRVLVVSEWGGRSVKAETANNNGVEEVXXXXXXXXXXXXXXSRLSNGKD----GSSPPHAPRRVFNLHFFVEARTPKEERELKRWQERPGAKWIAFGTPPPRAHGCKEVYSYITGRGRGGEGKAGXXXXXXXXXXXXKLKLPWFSSR-KNGMPGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGLMSYTRYGECPTWYGTGRMCGLDVQAKQVDSFASLPAKLRKKVLEIDPEFEAGPPGTMKEVRRAAREKRLEREEKRRRKGR-SLRGLF 1909
            M+GRLTNTATGQTIALVEGVELARSLAFETA SRK           S R                A AEGEGELEVDKALKPG WTAFG LA SKFFMYQ    DPATGEPMDHFRNTPVEKKQAVRTYERFSQVVSHLLQPNGRVLVVSEW GRSVKAETANNNGVEE+                L +GKD      SP   PRRVFNLHFFVEARTPKEERELKRWQERPGA+WIAFG+PPPRAHGCKEVYSY+TG  R G G               K +LPW  +R K                          XXXXXXXXXXXXXX LMSYTRYGECPTWYGTGRMCGLDVQA++VDSF+SLPAKLR+KVLE+DPEFE GPPGTM EVRRAARE+RLEREE+RRRKGR SLR  F
Sbjct:    1 MRGRLTNTATGQTIALVEGVELARSLAFETASSRK-----------SSRRPXXXXXXXXXXXXXVAGAEGEGELEVDKALKPGRWTAFGALATSKFFMYQ----DPATGEPMDHFRNTPVEKKQAVRTYERFSQVVSHLLQPNGRVLVVSEWDGRSVKAETANNNGVEEIEGGRGGWFPGGARD--LGSGKDERSLSRSPSSPPRRVFNLHFFVEARTPKEERELKRWQERPGARWIAFGSPPPRAHGCKEVYSYVTGSEREGGGGGNERKEGK------KARLPWAWNRSKAASDAREGDDNAEVVDDGSVALASSSXXXXXXXXXXXXXXXLMSYTRYGECPTWYGTGRMCGLDVQARRVDSFSSLPAKLREKVLEVDPEFEVGPPGTMGEVRRAAREQRLEREEERRRKGRRSLRRPF 398
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BLAST of mRNA_P-littoralis_Contig16.10.1 vs. uniprot
Match: A0A835YPS0_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YPS0_9STRA)

HSP 1 Score: 75.5 bits (184), Expect = 3.270e-11
Identity = 49/168 (29.17%), Postives = 70/168 (41.67%), Query Frame = 2 
Query: 1340 ERPGAKWIAFGTPPPRAHGCKEVYSYITGRGRGGEGKAGXXXXXXXXXXXXKLKLPWFSSRKNGMPGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGLMSYTRYGECPTWYGTGRMCGLDVQAKQVDSFASLPAKLRKKVLEIDPEFEAGPPGTMKEVRRAA 1843
            +R G KWI  G  PP  +GCKE Y+Y+                                +R+ G  G                                   GLM+Y RYGECP+WY  G+MC LD+QA++V+SF++LP  L+  V ++ P F    P T +E R+ +
Sbjct:  151 KRRGNKWIGIGPSPPPEYGCKESYTYV--------------------------------AREGGQDGEPDT-------------------------------GLMTYHRYGECPSWYAPGKMCSLDMQARRVESFSALPKPLQSAVRKLVPSF-CNVPHTAQEFRQTS 254
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig16.10.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A6H5K8Z3_9PHAE3.460e-15668.08Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FYF1_ECTSI1.160e-15568.17Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A835YPS0_9STRA3.270e-1129.17Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig16contigP-littoralis_Contig16:30044..33644 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size2411
Hectar predicted targeting categoryother localisation
Exons3
Ec32 ortholog descriptionankyrin repeat protein
Ec32 orthologEc-08_003820.1
Cds size1350
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789764.2331982-UTR-P-littoralis_Contig16:30043..305361680789764.2331982-UTR-P-littoralis_Contig16:30043..30536Pylaiella littoralis U1_48UTRP-littoralis_Contig16 30044..30536 -
1680789764.2750673-UTR-P-littoralis_Contig16:33076..336441680789764.2750673-UTR-P-littoralis_Contig16:33076..33644Pylaiella littoralis U1_48UTRP-littoralis_Contig16 33077..33644 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789764.2425823-CDS-P-littoralis_Contig16:30536..313161680789764.2425823-CDS-P-littoralis_Contig16:30536..31316Pylaiella littoralis U1_48CDSP-littoralis_Contig16 30537..31316 -
1680789764.2531874-CDS-P-littoralis_Contig16:31997..321591680789764.2531874-CDS-P-littoralis_Contig16:31997..32159Pylaiella littoralis U1_48CDSP-littoralis_Contig16 31998..32159 -
1680789764.264431-CDS-P-littoralis_Contig16:32668..330761680789764.264431-CDS-P-littoralis_Contig16:32668..33076Pylaiella littoralis U1_48CDSP-littoralis_Contig16 32669..33076 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig16.10.1prot_P-littoralis_Contig16.10.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig16 30537..33076 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig16.10.1

>prot_P-littoralis_Contig16.10.1 ID=prot_P-littoralis_Contig16.10.1|Name=mRNA_P-littoralis_Contig16.10.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=450bp
MVQPSLRRRSRRRSRKEKSTAVSPPPPAACWHMKGRLTNTATGQTIALVE
GVELARSLAFETAPSRKAAAAAADRRQKSLRSSKVAVGGKALVPAAAALA
EGEGELEVDKALKPGLWTAFGVLACSKFFMYQARMYDPATGEPMDHFRNT
PVEKKQAVRTYERFSQVVSHLLQPNGRVLVVSEWGGRSVKAETANNNGVE
EVEGGGGGGFFSGGGGSRLSNGKDGSSPPHAPRRVFNLHFFVEARTPKEE
RELKRWQERPGAKWIAFGTPPPRAHGCKEVYSYITGRGRGGEGKAGGGEA
AGGGGGGGKLKLPWFSSRKNGMPGGGMAAGGEGGTVVSSASSTSSQGGGG
GGRGGGRGGGLMSYTRYGECPTWYGTGRMCGLDVQAKQVDSFASLPAKLR
KKVLEIDPEFEAGPPGTMKEVRRAAREKRLEREEKRRRKGRSLRGLFRS*
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mRNA from alignment at P-littoralis_Contig16:30044..33644-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig16.10.1 ID=mRNA_P-littoralis_Contig16.10.1|Name=mRNA_P-littoralis_Contig16.10.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=3601bp|location=Sequence derived from alignment at P-littoralis_Contig16:30044..33644- (Pylaiella littoralis U1_48)
GCAGGACACCCTTTTACACACGTACTCACGATGGCACCACATATTTCCGA
GACCATTGCCGTGCTAGTTATGGTAGCCGCTGTGATGCTCTCGGCAGCGC
CGCCATTGGCAGCGGCAACAACAACGAAAGCAGCAGCAGCAACAACAACA
CCACCACCAGCAGCAACTCGACAACATCAACGTTCTGCAGCAGCAGCAGC
AGCAAGATCAGCATCGTGCTCTCGCAAACCGATCTTGGCGTGGGGGTGGC
GGGACCAGAAACGCAGTCAGGACCCGGTGGCCCCTAGAATAAAAGGTGCC
GCTCGTAACAATGCGCTGCTCGGGGATGATGAGAGACGGCAGACGACGTT
TGCTGGGTCTCAGGAGCAGGCGCTGGACAGGTCGTGGACACACGCGGCGT
TCAGAGCGTTCCACGAGATGAGAGCGGGCAGTCCACCCGCAGCATCGGGG
GGTGACGGAGTACAAGGAGAGAGCCAGGACGGAAACATCGGACAGGGTGA
GGGGAAAGGTCCGTTGTCAGGGTTCAGCCGCCTCGCCTTCAGAAAACGGC
AGCGTGAAACAAGCTCAAATGGTCCAGCCATCGCTGCGAAGGAGGAGCAG
GAGGAGGAGCAGGAAGGAGAAGAGCACAGCAGTAAGCCCCCCCCCCCCCG
CCGCATGTTGGCACATGAAAGGACGTCTCACCAATACCGCCACCGGCCAG
ACCATTGCCTTGGTGGAAGGCGTCGAGCTTGCCCGAAGCCTAGCCTTCGA
GACTGCCCCCTCAAGAAAAGCAGCAGCAGCAGCAGCTGACAGACGGCAGA
AAAGTCTCCGCAGCAGCAAGGTTGCAGTCGGCGGAAAGGCACTGGTCCCA
GCGGCAGCGGCCCTAGCTGAAGGAGAAGGAGAGCTGGAGGTGGACAAGGC
GCTGAAGCCTGGACTATGGACGGCGTTCGGCGTTCTGGCCTGCAGCAAGT
TTTTCATGTATCAGGCGCGTATGTATGTGCTGACAAATTGATATGTCGCT
GCTGCAGTCGTTTGTATCCCTTTGCTTTGTCGTCGGAAATGCGGTCAGGG
ATCATGACTAAAGGGTGTTTTCCCCCCACTTTGCATGATACTGTGTACAA
GTATTTCGGAGTACTTCGAAGTACAAGATACGCCTGTGTACTACAAGTAG
TTCATGTTCCTCCTTGTAGACATTCCATCGGATGCTGGTGGTGTGCTGAT
CGTGAAGCATTGTAGGTACCCCTCCCTCCCTCTCCCACCGTCTTTACCGA
CCCCATGGGGTTTGGAAAATTCACTGACCCCTACTGCCGCAGCTCTCCCT
CTTCCCAACCTCCGCCCCCACTACGGGCGCGCTCTGTCTTATGCTTCCAC
TCATGCGCGCGTCCCCCGAGTGAATGTACAAGTATACGATGATGATGATG
ACGGTGACGGTGACGATGATGTTCATGTACTTGGTGTATGGCACCATGCG
CTTTCTGGTTTCCTTCGCTCACCACGTTCTCGCAGGACCCCGCAACCGGC
GAGCCGATGGACCACTTCCGCAACACCCCGGTCGAGAAGAAGCAGGCGGT
GCGGACGTACGAGCGATTCTCGCAGGTGGTGTCCCACCTGCTGCAGCCCA
ACGGGCGCGTGCTGGTGGTCAGTGAGTGGGGCGGCCGGTCCGTAAAGGTG
AGCTTAAGAGATTTTTAGCACTCCTACGGTACGATACAGCAGCCTCTTTT
TTTAGAGGCTTGAGACTGTGTTTCCTAGCGCGCCTCGCTCATTGTCTCTA
CCGCCCGTTGCAGCCCGTTGTTTCGGATTCGTTTTTTATTTTTCATGTCC
GCCGTCGGAATGCGGCGATGCTTTTTTTCTGTTTTTTTTTTAATTGTTTT
TTTGTTTCGTTTCGGTTTGTTTGTGCCGGTTTCGCGTTTTGGCTGCATGA
TATCCCCGAAACACTGCGGGCGAACATGCTGACAAACATCGGCGATGATA
TTGAACTTCTCGTTGGCATTGCCTCCCCCCCCCCGTTTTCAACGCGAATA
TCGATCGAGTTTCCTTCAGGAAGAGCCCGCACGCCTTACAGAAGTGGGTT
GCTCGTCGCATTGTTAGAGCAGGCCATGCAGCTGCTGGTCTTGCGTGCGC
ACCGTTGTACAACTGCAATCACTGGTTAGCTTGCCTTCTTTCAGAAGCAC
ACCTTGAGCGCCTCCATTGCTGCCGCCAAATGTAATGGATCACGACAAAC
AATGCGGAAACACGTGGGTTTTCTAGATGAACGACGAAGAAAAATGCGAC
TTTCCCCTCCATATTCTTGCAACACTTTTGCTTCCGCGCTGCTTCCGTTC
CCTTGTGTTCTTCGGCCTGTCCTTCCAGGCGGAAACGGCAAACAACAACG
GCGTGGAAGAAGTAGAGGGCGGTGGCGGCGGCGGTTTCTTTTCCGGTGGC
GGGGGGAGTCGGCTCAGCAACGGCAAGGACGGCAGCTCTCCCCCCCACGC
ACCGCGTCGAGTCTTCAATCTCCATTTTTTCGTCGAGGCACGAACGCCGA
AGGAGGAGCGAGAGCTCAAGCGGTGGCAGGAGCGGCCGGGAGCCAAATGG
ATCGCGTTTGGCACGCCACCGCCCCGGGCTCACGGTTGCAAGGAAGTGTA
CAGCTACATCACCGGAAGAGGACGGGGAGGAGAAGGAAAGGCCGGGGGCG
GAGAAGCTGCAGGGGGAGGGGGAGGGGGAGGAAAGCTTAAGCTGCCGTGG
TTTTCTAGCAGGAAGAACGGTATGCCGGGTGGAGGGATGGCCGCCGGTGG
CGAAGGAGGTACGGTCGTATCGTCGGCTTCGTCAACTTCGTCTCAGGGCG
GCGGCGGCGGTGGACGTGGTGGAGGTAGAGGTGGAGGGTTGATGTCCTAC
ACGCGGTACGGCGAGTGCCCGACGTGGTACGGGACTGGGCGCATGTGCGG
GCTCGACGTTCAGGCCAAGCAGGTGGACTCCTTCGCGTCCCTCCCGGCCA
AGCTGAGGAAGAAGGTGCTGGAGATAGACCCCGAATTCGAGGCAGGACCC
CCCGGCACGATGAAGGAGGTCAGACGGGCCGCGAGGGAAAAGCGGCTGGA
AAGGGAGGAAAAAAGACGGCGGAAGGGGAGGTCGTTACGGGGGCTCTTTC
GATCGTAAATGTTGCCTTATTTTATTTTTTCTTCCTTCGCAGTGTTGGAG
TTAATAGTTGTGACTGTGGTTCCGTTGGGAAAATTTGCGGATGGATTGAC
TTGAGGCAGTAGGTCTTAGGGGGATAGACTGAGACACGCGTGTTGTGGTG
TGACATTTTTGGGGTTGGTGGACAGGGATGGTGTTTGTGGCAGTAGAAGT
GTTGTGCCAGCAGCTTAGATAGATAATGTTGCGCAATACCGTGTGGTCTT
AGCTCTACACCTACAAGTACTGAATTGATACTTTAGTGCGCGTTTTCACC
GATTGCTTGGATCTTTATGAACGTTTCGCCTGAAACTGAAACTTTGGCGC
GTTGTTTAGTCGCAAGTTTCGTATACCTGGTTTTGAGAGGCGGCTTGCAC
CCAACTTGTTTGTATTACCAAATATCCACACCGCTTGAGTTGTATTGCCG
CCCTAGTTTAAAAGCAGCTCATATTTGTGCATGCTTATGGCACGAAACAC
C
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Coding sequence (CDS) from alignment at P-littoralis_Contig16:30044..33644-

>mRNA_P-littoralis_Contig16.10.1 ID=mRNA_P-littoralis_Contig16.10.1|Name=mRNA_P-littoralis_Contig16.10.1|organism=Pylaiella littoralis U1_48|type=CDS|length=1350bp|location=Sequence derived from alignment at P-littoralis_Contig16:30044..33644- (Pylaiella littoralis U1_48)
ATGGTCCAGCCATCGCTGCGAAGGAGGAGCAGGAGGAGGAGCAGGAAGGA
GAAGAGCACAGCAGTAAGCCCCCCCCCCCCCGCCGCATGTTGGCACATGA
AAGGACGTCTCACCAATACCGCCACCGGCCAGACCATTGCCTTGGTGGAA
GGCGTCGAGCTTGCCCGAAGCCTAGCCTTCGAGACTGCCCCCTCAAGAAA
AGCAGCAGCAGCAGCAGCTGACAGACGGCAGAAAAGTCTCCGCAGCAGCA
AGGTTGCAGTCGGCGGAAAGGCACTGGTCCCAGCGGCAGCGGCCCTAGCT
GAAGGAGAAGGAGAGCTGGAGGTGGACAAGGCGCTGAAGCCTGGACTATG
GACGGCGTTCGGCGTTCTGGCCTGCAGCAAGTTTTTCATGTATCAGGCGC
GTATGTATGACCCCGCAACCGGCGAGCCGATGGACCACTTCCGCAACACC
CCGGTCGAGAAGAAGCAGGCGGTGCGGACGTACGAGCGATTCTCGCAGGT
GGTGTCCCACCTGCTGCAGCCCAACGGGCGCGTGCTGGTGGTCAGTGAGT
GGGGCGGCCGGTCCGTAAAGGCGGAAACGGCAAACAACAACGGCGTGGAA
GAAGTAGAGGGCGGTGGCGGCGGCGGTTTCTTTTCCGGTGGCGGGGGGAG
TCGGCTCAGCAACGGCAAGGACGGCAGCTCTCCCCCCCACGCACCGCGTC
GAGTCTTCAATCTCCATTTTTTCGTCGAGGCACGAACGCCGAAGGAGGAG
CGAGAGCTCAAGCGGTGGCAGGAGCGGCCGGGAGCCAAATGGATCGCGTT
TGGCACGCCACCGCCCCGGGCTCACGGTTGCAAGGAAGTGTACAGCTACA
TCACCGGAAGAGGACGGGGAGGAGAAGGAAAGGCCGGGGGCGGAGAAGCT
GCAGGGGGAGGGGGAGGGGGAGGAAAGCTTAAGCTGCCGTGGTTTTCTAG
CAGGAAGAACGGTATGCCGGGTGGAGGGATGGCCGCCGGTGGCGAAGGAG
GTACGGTCGTATCGTCGGCTTCGTCAACTTCGTCTCAGGGCGGCGGCGGC
GGTGGACGTGGTGGAGGTAGAGGTGGAGGGTTGATGTCCTACACGCGGTA
CGGCGAGTGCCCGACGTGGTACGGGACTGGGCGCATGTGCGGGCTCGACG
TTCAGGCCAAGCAGGTGGACTCCTTCGCGTCCCTCCCGGCCAAGCTGAGG
AAGAAGGTGCTGGAGATAGACCCCGAATTCGAGGCAGGACCCCCCGGCAC
GATGAAGGAGGTCAGACGGGCCGCGAGGGAAAAGCGGCTGGAAAGGGAGG
AAAAAAGACGGCGGAAGGGGAGGTCGTTACGGGGGCTCTTTCGATCGTAA
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