mRNA_P-littoralis_Contig16.156.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig16.156.1
Unique NamemRNA_P-littoralis_Contig16.156.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig16.156.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig16contigP-littoralis_Contig16:602215..602832 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size620
Hectar predicted targeting categorysignal anchor
Exons1
Cds size462
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789763.826954-UTR-P-littoralis_Contig16:602214..6023701680789763.826954-UTR-P-littoralis_Contig16:602214..602370Pylaiella littoralis U1_48UTRP-littoralis_Contig16 602215..602370 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789763.8389444-CDS-P-littoralis_Contig16:602370..6028321680789763.8389444-CDS-P-littoralis_Contig16:602370..602832Pylaiella littoralis U1_48CDSP-littoralis_Contig16 602371..602832 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig16.156.1prot_P-littoralis_Contig16.156.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig16 602371..602832 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig16.156.1

>prot_P-littoralis_Contig16.156.1 ID=prot_P-littoralis_Contig16.156.1|Name=mRNA_P-littoralis_Contig16.156.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=154bp
MICMQQASGVRLGRTCGILLVPPCAGMPMPTPMPMSMPVPALGVVLHLNR
EPPVIARFNIDRLLRGTCWLGCALLAIILVSACIDFHATAVLLSTDCFGM
LQQIVPTSRRQKSLLSSLKFDENNHSSSIAFAYSFCDDDWGSAARTPASR
KTTT
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mRNA from alignment at P-littoralis_Contig16:602215..602832+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig16.156.1 ID=mRNA_P-littoralis_Contig16.156.1|Name=mRNA_P-littoralis_Contig16.156.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=618bp|location=Sequence derived from alignment at P-littoralis_Contig16:602215..602832+ (Pylaiella littoralis U1_48)
CAAAGTACATCGATCCTGGCGAGTTTAAGGCCTTCTTGGCCGACCTGCAG
AGCTTGGAAAACGACCAGGGGAGCCTCTCCAGGCGAGCGGTGCACGGCGT
GGCAGTAGTGTGCAGTTCGGTTGAATTTGTGTCGCGCGTCGTTTCAGCAC
GTACGTATGATATGTATGCAGCAAGCTTCGGGTGTAAGGTTGGGTAGAAC
TTGCGGTATTCTTCTGGTGCCCCCGTGTGCTGGCATGCCGATGCCGACGC
CGATGCCGATGTCGATGCCGGTGCCAGCGCTAGGTGTTGTTCTTCATCTG
AATCGTGAGCCGCCTGTCATCGCACGGTTCAACATTGATCGTTTGTTGCG
AGGCACGTGCTGGCTGGGTTGCGCCCTTCTTGCGATTATCCTTGTGTCCG
CCTGCATCGATTTTCACGCCACCGCCGTTTTATTGTCGACCGATTGTTTT
GGCATGTTGCAACAAATCGTTCCGACCTCGCGGCGACAGAAATCTCTCCT
CTCGTCACTCAAGTTTGATGAAAACAACCACAGCAGCAGCATAGCTTTTG
CGTATAGCTTCTGCGACGACGATTGGGGTTCTGCTGCAAGAACTCCCGCC
TCCCGCAAAACAACAACA
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Coding sequence (CDS) from alignment at P-littoralis_Contig16:602215..602832+

>mRNA_P-littoralis_Contig16.156.1 ID=mRNA_P-littoralis_Contig16.156.1|Name=mRNA_P-littoralis_Contig16.156.1|organism=Pylaiella littoralis U1_48|type=CDS|length=462bp|location=Sequence derived from alignment at P-littoralis_Contig16:602215..602832+ (Pylaiella littoralis U1_48)
ATGATATGTATGCAGCAAGCTTCGGGTGTAAGGTTGGGTAGAACTTGCGG
TATTCTTCTGGTGCCCCCGTGTGCTGGCATGCCGATGCCGACGCCGATGC
CGATGTCGATGCCGGTGCCAGCGCTAGGTGTTGTTCTTCATCTGAATCGT
GAGCCGCCTGTCATCGCACGGTTCAACATTGATCGTTTGTTGCGAGGCAC
GTGCTGGCTGGGTTGCGCCCTTCTTGCGATTATCCTTGTGTCCGCCTGCA
TCGATTTTCACGCCACCGCCGTTTTATTGTCGACCGATTGTTTTGGCATG
TTGCAACAAATCGTTCCGACCTCGCGGCGACAGAAATCTCTCCTCTCGTC
ACTCAAGTTTGATGAAAACAACCACAGCAGCAGCATAGCTTTTGCGTATA
GCTTCTGCGACGACGATTGGGGTTCTGCTGCAAGAACTCCCGCCTCCCGC
AAAACAACAACA
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