mRNA_P-littoralis_Contig16.46.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig16.46.1
Unique NamemRNA_P-littoralis_Contig16.46.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig16.46.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig16contigP-littoralis_Contig16:160423..160854 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size432
Hectar predicted targeting categoryother localisation
Exons1
Cds size303
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789763.7426755-UTR-P-littoralis_Contig16:160422..1605341680789763.7426755-UTR-P-littoralis_Contig16:160422..160534Pylaiella littoralis U1_48UTRP-littoralis_Contig16 160423..160534 -
1680789763.7620738-UTR-P-littoralis_Contig16:160837..1608541680789763.7620738-UTR-P-littoralis_Contig16:160837..160854Pylaiella littoralis U1_48UTRP-littoralis_Contig16 160838..160854 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789763.7515984-CDS-P-littoralis_Contig16:160534..1608371680789763.7515984-CDS-P-littoralis_Contig16:160534..160837Pylaiella littoralis U1_48CDSP-littoralis_Contig16 160535..160837 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig16.46.1prot_P-littoralis_Contig16.46.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig16 160535..160837 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig16.46.1

>prot_P-littoralis_Contig16.46.1 ID=prot_P-littoralis_Contig16.46.1|Name=mRNA_P-littoralis_Contig16.46.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=101bp
MQDVTGDAGSTFVWSTFACHPRTTVRRKVGGVGGQRRFVGQIHIFCVIVG
LLYTTYMIRISQQHCALSRFLEELFENILIGTGILLFREESTCRVGVWYR
*
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mRNA from alignment at P-littoralis_Contig16:160423..160854-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig16.46.1 ID=mRNA_P-littoralis_Contig16.46.1|Name=mRNA_P-littoralis_Contig16.46.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=432bp|location=Sequence derived from alignment at P-littoralis_Contig16:160423..160854- (Pylaiella littoralis U1_48)
CACATGATCTCTCGCTGATGCAAGATGTGACAGGCGATGCTGGGTCAACA
TTCGTTTGGTCTACATTTGCCTGTCATCCGAGAACCACCGTGCGACGGAA
GGTGGGGGGGGTGGGGGGCCAGAGGCGATTCGTAGGACAGATTCATATTT
TTTGTGTTATAGTCGGACTGTTGTACACGACCTACATGATACGTATTTCG
CAGCAGCATTGTGCGTTGTCACGATTTCTTGAAGAGCTTTTTGAAAACAT
ATTGATTGGTACTGGCATCCTCCTTTTCAGGGAAGAATCGACATGTAGAG
TGGGTGTATGGTATCGTTGAGTCACCAACGCGAGTATGCAAACTCAAACC
ACAACGATTGGGTGCGGGCCTGGCTTGTGCTGCAGATGGTTTCACGCTGT
TCCGGACAAAATGGGAAGATGACCCTCGCGCG
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Coding sequence (CDS) from alignment at P-littoralis_Contig16:160423..160854-

>mRNA_P-littoralis_Contig16.46.1 ID=mRNA_P-littoralis_Contig16.46.1|Name=mRNA_P-littoralis_Contig16.46.1|organism=Pylaiella littoralis U1_48|type=CDS|length=303bp|location=Sequence derived from alignment at P-littoralis_Contig16:160423..160854- (Pylaiella littoralis U1_48)
ATGCAAGATGTGACAGGCGATGCTGGGTCAACATTCGTTTGGTCTACATT
TGCCTGTCATCCGAGAACCACCGTGCGACGGAAGGTGGGGGGGGTGGGGG
GCCAGAGGCGATTCGTAGGACAGATTCATATTTTTTGTGTTATAGTCGGA
CTGTTGTACACGACCTACATGATACGTATTTCGCAGCAGCATTGTGCGTT
GTCACGATTTCTTGAAGAGCTTTTTGAAAACATATTGATTGGTACTGGCA
TCCTCCTTTTCAGGGAAGAATCGACATGTAGAGTGGGTGTATGGTATCGT
TGA
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