mRNA_P-littoralis_Contig16.24.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig16.24.1
Unique NamemRNA_P-littoralis_Contig16.24.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig16.24.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig16contigP-littoralis_Contig16:99060..99747 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size688
Hectar predicted targeting categoryother localisation
Exons1
Cds size396
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789763.6739244-UTR-P-littoralis_Contig16:99059..992781680789763.6739244-UTR-P-littoralis_Contig16:99059..99278Pylaiella littoralis U1_48UTRP-littoralis_Contig16 99060..99278 +
1680789763.7099223-UTR-P-littoralis_Contig16:99674..997471680789763.7099223-UTR-P-littoralis_Contig16:99674..99747Pylaiella littoralis U1_48UTRP-littoralis_Contig16 99675..99747 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789763.689785-CDS-P-littoralis_Contig16:99278..996741680789763.689785-CDS-P-littoralis_Contig16:99278..99674Pylaiella littoralis U1_48CDSP-littoralis_Contig16 99279..99674 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig16.24.1prot_P-littoralis_Contig16.24.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig16 99279..99674 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig16.24.1

>prot_P-littoralis_Contig16.24.1 ID=prot_P-littoralis_Contig16.24.1|Name=mRNA_P-littoralis_Contig16.24.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=132bp
MPTLFVDPSWMHLLFFVGGGDSLPISLGLRVPFSPCNDAPFDAGCACTRS
CCGGNNTSSNTSGGGGGGAAAAAENFRQEVVKILFPDAIPPYPLPPTFRL
PPPSDISFPALPRGKPPHCNKLREHFVSRVC*
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mRNA from alignment at P-littoralis_Contig16:99060..99747+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig16.24.1 ID=mRNA_P-littoralis_Contig16.24.1|Name=mRNA_P-littoralis_Contig16.24.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=688bp|location=Sequence derived from alignment at P-littoralis_Contig16:99060..99747+ (Pylaiella littoralis U1_48)
CGGATTTTGGGGGGGGTGAGGGGGATGGGACGGATTGGCAGTTTGATGCG
ATTTCAGTGCGACACATGGTATTTATGCCTCCAAATTATCAGTTTTATCC
CGTCGTTGGTTTATCTAAAGTAGTACGTGTGGGTACCAAAGACAGCCGAG
ATTCTGTGTTGCAAAAACACGTGTTGAAAATAGATTTCTCCGGCCGCCTT
GCAGGGCCCGTGTGACCGAATGCCTACTCTTTTTGTCGATCCATCCTGGA
TGCATTTGCTTTTCTTCGTGGGCGGAGGAGACTCGCTTCCGATAAGTTTA
GGCCTCCGCGTGCCCTTCTCTCCCTGCAACGACGCCCCTTTCGACGCTGG
ATGTGCCTGCACCCGCAGTTGTTGCGGCGGCAACAACACCAGCAGCAACA
CCAGCGGCGGTGGCGGTGGCGGCGCGGCGGCAGCAGCTGAAAATTTTCGA
CAGGAAGTGGTTAAAATATTATTCCCTGACGCGATCCCCCCCTACCCCCT
TCCCCCTACCTTCCGCCTCCCCCCCCCCTCCGATATCTCGTTTCCGGCCT
TGCCACGCGGAAAACCACCGCACTGCAATAAATTGCGTGAACACTTCGTT
TCCAGAGTCTGCTGACGGGGTACGGGCTGGACGATGACGACGGGAACAGT
GAGGATAATGACGGTGCTGGTGCTGCCACCAAGCCGGC
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Coding sequence (CDS) from alignment at P-littoralis_Contig16:99060..99747+

>mRNA_P-littoralis_Contig16.24.1 ID=mRNA_P-littoralis_Contig16.24.1|Name=mRNA_P-littoralis_Contig16.24.1|organism=Pylaiella littoralis U1_48|type=CDS|length=396bp|location=Sequence derived from alignment at P-littoralis_Contig16:99060..99747+ (Pylaiella littoralis U1_48)
ATGCCTACTCTTTTTGTCGATCCATCCTGGATGCATTTGCTTTTCTTCGT
GGGCGGAGGAGACTCGCTTCCGATAAGTTTAGGCCTCCGCGTGCCCTTCT
CTCCCTGCAACGACGCCCCTTTCGACGCTGGATGTGCCTGCACCCGCAGT
TGTTGCGGCGGCAACAACACCAGCAGCAACACCAGCGGCGGTGGCGGTGG
CGGCGCGGCGGCAGCAGCTGAAAATTTTCGACAGGAAGTGGTTAAAATAT
TATTCCCTGACGCGATCCCCCCCTACCCCCTTCCCCCTACCTTCCGCCTC
CCCCCCCCCTCCGATATCTCGTTTCCGGCCTTGCCACGCGGAAAACCACC
GCACTGCAATAAATTGCGTGAACACTTCGTTTCCAGAGTCTGCTGA
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