mRNA_P-littoralis_Contig16.229.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig16.229.1
Unique NamemRNA_P-littoralis_Contig16.229.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig16.229.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig16contigP-littoralis_Contig16:987997..990930 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size744
Hectar predicted targeting categoryother localisation
Exons2
Cds size396
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789763.6025078-UTR-P-littoralis_Contig16:987996..9882941680789763.6025078-UTR-P-littoralis_Contig16:987996..988294Pylaiella littoralis U1_48UTRP-littoralis_Contig16 987997..988294 +
1680789763.6362808-UTR-P-littoralis_Contig16:990880..9909301680789763.6362808-UTR-P-littoralis_Contig16:990880..990930Pylaiella littoralis U1_48UTRP-littoralis_Contig16 990881..990930 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789763.6141489-CDS-P-littoralis_Contig16:988294..9885051680789763.6141489-CDS-P-littoralis_Contig16:988294..988505Pylaiella littoralis U1_48CDSP-littoralis_Contig16 988295..988505 +
1680789763.6270888-CDS-P-littoralis_Contig16:990695..9908801680789763.6270888-CDS-P-littoralis_Contig16:990695..990880Pylaiella littoralis U1_48CDSP-littoralis_Contig16 990696..990880 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig16.229.1prot_P-littoralis_Contig16.229.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig16 988295..990880 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig16.229.1

>prot_P-littoralis_Contig16.229.1 ID=prot_P-littoralis_Contig16.229.1|Name=mRNA_P-littoralis_Contig16.229.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=132bp
MAAAVTEADSSLGTAAYKAAAGPRSMLLWGLEALRGMLHEKERRCFCRVP
RRQPTPRLALPRQQRRHISRVATQARRRSRRHERRGRSLYVIHHAHSPGR
SHSDGNGFEPPRREEGAKRHSRAGQSYGGGV*
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mRNA from alignment at P-littoralis_Contig16:987997..990930+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig16.229.1 ID=mRNA_P-littoralis_Contig16.229.1|Name=mRNA_P-littoralis_Contig16.229.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=2934bp|location=Sequence derived from alignment at P-littoralis_Contig16:987997..990930+ (Pylaiella littoralis U1_48)
CGTGGAAAAGCCTCTACAAGAGCACTACAACGTAAAGAGGATAGGAAAAC
ACAGAGTTTACCATGTCAATCGCGGCTGTCGCAATGGGCGCCAGCGCTCT
GGACGCCAACTGAACCTTAGCGTCCCAAAATGCACAAAGCCCGCCCTCCA
AGGAGGTCCCAACGTCGTTGATTTGGCAGAGGTCATCCGTCCAGACGGAG
CGACGTTCTCGAGCCTCTCCCTGCTCGAAGTCACGGAGGCCATCGCTCCG
ATCGTGGAGAGCCGCGGCAACGCATCCGGCGTGTCCCTGTTTGCAGCGAT
GGCAGCTGCAGTGACCGAGGCGGACTCCTCCCTCGGCACGGCGGCCTACA
AGGCGGCGGCGGGGCCGCGCTCCATGCTCCTGTGGGGACTCGAAGCTTTG
CGCGGCATGCTCCACGAGAAGGAGCGAAGGTGTTTCTGCCGGGTCCCCCG
GCGCCAGCCGACGCCGCGCCTGGCTCTTCCGCGCCAGCAGCGGCGACATA
TCTCGCGAGGTGAATTTTGGGTGCTTGCATTTTATCTCCATCCACCGCTG
CGCATTTGTTCGGGCTTCGGCCTTAAATCTATGGGGGTACACTAGGTTCC
ATATATTCTCTTCACCTTTCTGCTTTCCATCGTTCTCGGATGCCAGCAAT
ATTTAGGTTCGGAGTAATGCGGTACTGGAAAAGAGGGATCGGTTTCTGTA
CTCTTTATCATAAATGCTGTTTCACCGACTGCCTGTACAGTACGGCAGTA
CCGGCTACACCGCCGTGCTTATATTGATATGGTACGTTACTGCCATGAGC
AGTTGCGTCGTACACTCCGGAACTGCTGTAACTGACATCAGGGGTGGATT
CGTACACTCAAACTGAGTAGTGAGTATGCGATACTGTTGTAGACCGAGCC
GCCATACGATTGTACAAACGTCCCTGCCTGCTGTAACCACGCTGCGGTAC
CGGGAGTGCGTATCGGACGACCCGCTATTGACGAATACCTGGTAGTGATG
ATGCGTGCTATTTACGACCGACCGGGTTCGATCCCCTTAAATACCTGCGT
CTACGGCGGGGTTCGATTTCATCACTTACGGAAGGATGCTTTATTCTATT
TCATTTTATTTTCGGTTCTATCATACCTGAAATGCTGTCATGTACGATAC
CGACATTAGGAATACTCCGGAACCGGGTAATGAGTAGGCTGCTGCTGTAC
CCAGACACCTTGACGACTGCTGTTGACACTTTATTTTATTTTGTTCCACC
TCACTGTGTACGATACTGCTGATGATACTCGATCCTTATTTTCCGTTCTA
CCTCATTCCGTACGATACTGACATCAAGTGGTTGGTTTCTTCGTATGGTC
CGGAACCGGAAATGAGTAGGTAGGCTACTGCTGTACACACACACCATAAC
CATGCTGCGGTAGACCGGGCCGCAATACTGTACAACCGCCCGGGCCCGCG
GTAACCAGGCCGCGGTACCGGGAACCACCGTAGAGCGTATTGTAGGTTCC
GTTATGGACGCATAGTTATTATACATGTACGTCTGGGTTCGATCCCCTAC
ACCTTTAAAACTACGGCGGGGGGGGGGGCTCGATGCCCCGCTTACGGAGG
GCACTTTATGTTTAAATTTTATTTTTCTATGTTGCTATTTTGACGAATAT
GTTCGAACGGGTTCGATCCCTTAATTTACGGACGGGTTCGATCCCCACTA
CACGATTTGGGTTCGATCCCCTCGGGCACGAACGAGTTCGACCCCCTACG
AACAGGTTCGATCTCCACTACGCAATTGGGTTCGATCCCCTCGGGATACG
AAGGGGTTCGACCCCCCTAATTTTCAGACAGGTTCGATCCCCACTGACGC
AATTGGGTTCGATCCTCGTATCCGAACGGGTTCGACCCCCTGGTTTGGTT
TGGTCCTAtTTTTTGGACAGGCTCGATCCCCACTACGCAATTGGGTTCGA
TCCCCTCGTATCCAACAGGTTCGACCCCCTGGTTTTCGGACGGGTTCGAT
CCCCACTACGCAATCGGGTTCGATCCCCTCATACTTCGTATACTTTTACG
GACGGGTTCGATCCCCACTACGCAAACGGGTTCGATCCCCTCATATACTT
TTACGGACGAGTTCGACCCCCACTGGTTTTCGGACGGGTTCGGTCCCCAC
TGGTTTTCGGACGGGTTCGATCCCCACTACGCAATCGGGTTCGATCCCCT
CATATACTTTTACGGACGGGTTCGATCCCCACTAAACGCGTGGGTTCGAT
CCCCTACTACTGTACAAACGGGTTCGATCCCCTTGCGGTACGATCGGGTT
CGATCCCCTCATACTTCGTATACCTTTACGGACGGATTCGATCCCCACTT
ATCGCGTGGGTTCGACCCCCAACTGCTGTACGAACGGGTTCGATCCCCTT
GCGGTACGATTGGGCTCGACCCCCTGTGTGGCACGGTTCGACCCCGTGGG
GCTTTTGCCGGCAAATCAAGAATGTTATCTTTGCTTTGTCTTTCCGATCC
CCGTGGGGCTCTGCAGGAAAAACCAGGAATCTTGTTTATTTTATTCTATT
TCACTTTCTTTCGCGGCTGTGGTACGGTTCGATCCCCTTGCGAGTTTCTG
CGTGAAGTCCCCTGAGCGCGCCATGCGACGAACGAGTTTCATATTAACGT
GGCCGATCGGTTTCTTTGCTTTCATTTCCGACGGTGCGATCGATTGCAGT
TGCGACTCAAGCTCGACGGCGTTCTCGGCGTCATGAGCGACGCGGACGGT
CGCTATACGTGATTCACCATGCGCACTCACCTGGACGTAGCCATTCGGAT
GGCAATGGATTTGAACCTCCTCGACGCGAGGAAGGTGCTAAGCGACACAG
TCGCGCGGGGCAATCGTATGGTGGCGGCGTGTAACGATCCGGTTCTCGTC
CTTGGCGTCTTCTCCCAAGATGCTGCCGTCGGTC
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Coding sequence (CDS) from alignment at P-littoralis_Contig16:987997..990930+

>mRNA_P-littoralis_Contig16.229.1 ID=mRNA_P-littoralis_Contig16.229.1|Name=mRNA_P-littoralis_Contig16.229.1|organism=Pylaiella littoralis U1_48|type=CDS|length=396bp|location=Sequence derived from alignment at P-littoralis_Contig16:987997..990930+ (Pylaiella littoralis U1_48)
ATGGCAGCTGCAGTGACCGAGGCGGACTCCTCCCTCGGCACGGCGGCCTA
CAAGGCGGCGGCGGGGCCGCGCTCCATGCTCCTGTGGGGACTCGAAGCTT
TGCGCGGCATGCTCCACGAGAAGGAGCGAAGGTGTTTCTGCCGGGTCCCC
CGGCGCCAGCCGACGCCGCGCCTGGCTCTTCCGCGCCAGCAGCGGCGACA
TATCTCGCGAGTTGCGACTCAAGCTCGACGGCGTTCTCGGCGTCATGAGC
GACGCGGACGGTCGCTATACGTGATTCACCATGCGCACTCACCTGGACGT
AGCCATTCGGATGGCAATGGATTTGAACCTCCTCGACGCGAGGAAGGTGC
TAAGCGACACAGTCGCGCGGGGCAATCGTATGGTGGCGGCGTGTAA
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