mRNA_P-littoralis_Contig16.45.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig16.45.1
Unique NamemRNA_P-littoralis_Contig16.45.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig16.45.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig16contigP-littoralis_Contig16:155622..155858 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size209
Hectar predicted targeting categoryother localisation
Exons2
Cds size207
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789763.247019-CDS-P-littoralis_Contig16:155622..1557291680789763.247019-CDS-P-littoralis_Contig16:155622..155729Pylaiella littoralis U1_48CDSP-littoralis_Contig16 155623..155729 -
1680789763.2589285-CDS-P-littoralis_Contig16:155758..1558581680789763.2589285-CDS-P-littoralis_Contig16:155758..155858Pylaiella littoralis U1_48CDSP-littoralis_Contig16 155759..155858 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig16.45.1prot_P-littoralis_Contig16.45.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig16 155623..155858 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig16.45.1

>prot_P-littoralis_Contig16.45.1 ID=prot_P-littoralis_Contig16.45.1|Name=mRNA_P-littoralis_Contig16.45.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=69bp
ACIDALVDRDHIGFGGLRFVERGTLPQILALHGMVAGEDAVDEDRSAAAQ
EKETWAAGGIARARDEEGC
back to top

mRNA from alignment at P-littoralis_Contig16:155622..155858-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig16.45.1 ID=mRNA_P-littoralis_Contig16.45.1|Name=mRNA_P-littoralis_Contig16.45.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=237bp|location=Sequence derived from alignment at P-littoralis_Contig16:155622..155858- (Pylaiella littoralis U1_48)
GCGTGTATCGACGCCTTGGTAGACAGAGACCACATAGGGTTTGGTGGCTT
GCGTTTTGTGGAGAGGGGAACCCTGCCCCAGATATTAGCCCTCCACGGGA
CTTCGACGAAAGGGTTAGGATGGGATTGCTGGTTGCTGGAGAGGATGCCG
TAGATGAGGATCGCAGTGCCGCTGCTCAGGAGAAGGAGACGTGGGCGGCT
GGCGGTATCGCCAGAGCACGAGATGAGGAAGGCTGCT
back to top

Coding sequence (CDS) from alignment at P-littoralis_Contig16:155622..155858-

>mRNA_P-littoralis_Contig16.45.1 ID=mRNA_P-littoralis_Contig16.45.1|Name=mRNA_P-littoralis_Contig16.45.1|organism=Pylaiella littoralis U1_48|type=CDS|length=207bp|location=Sequence derived from alignment at P-littoralis_Contig16:155622..155858- (Pylaiella littoralis U1_48)
GCGTGTATCGACGCCTTGGTAGACAGAGACCACATAGGGTTTGGTGGCTT
GCGTTTTGTGGAGAGGGGAACCCTGCCCCAGATATTAGCCCTCCACGGGA
TGGTTGCTGGAGAGGATGCCGTAGATGAGGATCGCAGTGCCGCTGCTCAG
GAGAAGGAGACGTGGGCGGCTGGCGGTATCGCCAGAGCACGAGATGAGGA
AGGCTGC
back to top