mRNA_P-littoralis_Contig16.34.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig16.34.1
Unique NamemRNA_P-littoralis_Contig16.34.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig16.34.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig16contigP-littoralis_Contig16:121868..125645 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size1083
Hectar predicted targeting categoryother localisation
Exons2
Cds size972
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789763.0768957-UTR-P-littoralis_Contig16:121867..1219761680789763.0768957-UTR-P-littoralis_Contig16:121867..121976Pylaiella littoralis U1_48UTRP-littoralis_Contig16 121868..121976 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789763.0869477-CDS-P-littoralis_Contig16:121976..1223811680789763.0869477-CDS-P-littoralis_Contig16:121976..122381Pylaiella littoralis U1_48CDSP-littoralis_Contig16 121977..122381 +
1680789763.0966108-CDS-P-littoralis_Contig16:125078..1256451680789763.0966108-CDS-P-littoralis_Contig16:125078..125645Pylaiella littoralis U1_48CDSP-littoralis_Contig16 125079..125645 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig16.34.1prot_P-littoralis_Contig16.34.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig16 121977..125645 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig16.34.1

>prot_P-littoralis_Contig16.34.1 ID=prot_P-littoralis_Contig16.34.1|Name=mRNA_P-littoralis_Contig16.34.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=324bp
MPPKSGRKRGRDSTGSTGTPSPESQNQPSSALPGSAPPAASFSRTMRSNS
NSSQQEDDAGGSGSSGGGGDPRATKRSRHGGPAGREADSSGDVGMGEVTN
VVTKTPTAAAAAASAGAKKGGGRRKSTSVVVANGNSADAAAPQPASKRVR
NSTPSAAPTATAPIANGGGRPAAVAGAGRRPPVPPPAAAAAAASASASRT
PAGARAGAGGRGSAGQGSGVAFRSSAANGAVGAPAAAATATATAPSFGAS
VIGNNERAAAALAAEQVKAQQARPRPQASPSAASSPVPAARLRCVTGPES
SNGDGDGDDGGGSGGSGGGGDLLA
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mRNA from alignment at P-littoralis_Contig16:121868..125645+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig16.34.1 ID=mRNA_P-littoralis_Contig16.34.1|Name=mRNA_P-littoralis_Contig16.34.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=3778bp|location=Sequence derived from alignment at P-littoralis_Contig16:121868..125645+ (Pylaiella littoralis U1_48)
GAGCTGTACCTGAAAGACCAATGCAGGGCAGACAGAACACAGCAGAAATC
ACTCAGTAAAGACGCCAAAAGAAGATCACCGCGCCGTGCAACGGCAGTAG
CTTTAAGACATGCCTCCAAAATCAGGACGGAAGCGCGGTCGAGACTCAAC
GGGGAGTACCGGCACGCCGAGCCCTGAATCACAGAACCAGCCTTCCTCCG
CTCTGCCGGGATCTGCGCCGCCCGCTGCGTCCTTCTCTCGCACCATGAGA
TCTAACAGCAATAGTTCGCAGCAGGAGGACGATGCCGGCGGAAGCGGCAG
CAGCGGTGGTGGTGGCGATCCTCGTGCAACCAAGCGGAGCAGGCATGGCG
GGCCGGCTGGCCGCGAGGCGGACTCCAGCGGCGATGTTGGCATGGGCGAG
GTGACTAACGTCGTGACAAAGACACCAACAGCTGCTGCTGCTGCTGCTTC
TGCCGGTGCCAAGAAGGGAGGCGGTCGGCGTAAGAGCACCAGTGTCGTTG
TGGCAAACGGCAATGTACGTGTTTTGCTTGCTCAGTTTTTTGTGCTTGAT
TGTGCGACAGCGCGCGGTGTGTGTGTCTGTGTGTCTGTGTTTTGTCACGC
AGTGTTACCGCAGCAGGGCTTCCCCTTCCGTGTGTCTCCTACTGTACCAC
ATTCAGAATCGAGAACGAACCCGTTTTCAGATGTACGATACTGCTGTCTA
GCAGCCATGATATGGACGGATTATCTGCTGCATCACATCTAACGGGATAC
CCCAGTCATTTACTTTACTAGTGTGATACCTGCTACTTATAATAAAGAGT
ACATATGATGTGCATATGCACTACTGCCTTGTTGTTCGCCTCGAATTTTC
CACGGTGAGCGGTGTCCGCGCCCCGCCCCACCCTGCCTACAGCAGCCACA
GAAGCCACGACGTAGCAGTACAGCCGTAGCTCCCATCACTTCGACATATC
ACATACATACCTGGCACACAGAAAGGTACACACACAGATTGCTGTGCCCA
TTCCAACAACTCTATTTAGTACGGAGTACTTTTTAACTGCTGCACACACA
AGGTACATGTATGTACAGCGGCTTTGTATCGTATGCGGAGCTTTCAAATC
GATTGGAACAGAGTCGAGGAATCTGCTCCGAGCCCCGAGGTTGTCAAACC
CGCCTGGTTCGAACGGTAGATGCACACAACGTGACCTGACGCTTTTCACG
CAAGGACGGACAACGTCGTAAATAGGCAGAACATCCCACTGTCAGTGTTT
CGGAACTCACCCCGGGGTGGCCTCTAAATCCTGCTGTGCCCTTAAAGCAA
TACTTTCCGAGCACGGTGGGTGATTCGAGCATCAGAGTTTATCATCTCAT
CCGAACTCCTTGTGTGTCATCGTTTTTTCAGTCCTGTCTCCAACTCGATG
CGGAGTGACTGCTGTAGTGCCGATGCCCACCCGCCGTGCAGGCATGGGGC
AAGTTGTATGCAAACTGCTGTATCACACAGCACTTCACTTGCCAACCACA
CCAACACACGAAGGGAACGCCGGCCAGCGCTTCCTGCGACATGCAACGTT
GGAACGTCAGTTGTACGTGGAATAATAGACGGGCATGAGCCCAGCAGTAG
AGATGTGTCTGATGCCACCTCCACCAATGTCGAAGAAGTCGCAATATAAA
GTTCGAACCACAACAAAAGAACGCACGCCAATGTTTCAACTTGGCAGAGC
GACCCCAATCGCCCAGAAATTTCCAGGGATGAAGGTGGGTTGGTGTAGTG
CGCTCTTGTATAATTTGGGATAGCCACCACAGCGGGAGGCGTGGCAAAAT
ACACGAACCTTGGACTCGGAACAACCTCGGGGTTGTGATTCCAGCTATTG
TTTTCGCCTGCATTGTACATACAACAAAGGGCATTTTCCGACTGTACACG
TTAGGCGTCAACACCTGTGGAGAAAACGTAGGCATCCGAGACGGGCAATC
GACTCTACGCTGAAATCAACCAACGCTTGGTTCTACAGCATAACACGTTG
CCAGCTCCGTAGGCGGCAGAATATCTGCCAGGCGACCCTTCTATTTTCCA
AAGTAATCGATCCAGCCCAGCGCTTCAGATAGACCGCAGGCCTACGTTGT
GGCAACCTGCGGTTGCCGCGACAGCACGCCGGAGGCTTTTTTGGGATATT
TGCACGGTGTTTTGCACAAAATCGCTTTCAAACACACTCAAAGTACTTCG
AAGCATGTTGCACCGTCATTACGAGAAAACGTAGTGATTCAATCGACAAA
TAGCCGCCTTCGACATGAAAAAAAAAAAAAATGGCGAGAGAGGGCATGCC
CCACAAATATTTTCGCCTGCGGCGAAAAAATGTGCAGCACAAAACACGCT
GTTGCAGCATGCCGCAACAGAGGAACCTGGCAGTGTTGCGCTTTTCCCAA
ATTTACAACAATATGTTGCGCGGCCGCAACAGCTATCTGAAGCGCTGATC
CAGCCTATCGCGGCCGTTTGTGGCGGCCCCTGCGTGTGTTGAGCTCGTGC
TGACACCGGTGTGCTGTTGCACCTTGGCAGTACTGTAGGTTTGCACCAAA
GCGGCGAGACTGCGTTGTTCTGCTGTGTGCAATATGTTTTTGAATCCCCA
TAAGAGAAGGAAACTTATAATGCCCGAGTAGCCCCGTCAAGGGTAAACCC
AACTTGAACAGTAGTCATACAGACGCGAACATTACCCTTTTTGAAAGCAA
AAGGGTCGTACCCTAGATCTACTGTTGCACCACATTACCGGGGCTCATTC
GCTCTCTGCACTCGTACAGAATGATGCTGTTCTGGTGCACAGCATTTCGC
TCTCGAACTCCACATATTACGTACGTATGTACCGCCTCCTGCAGACGATG
CATATCTGACGTAAACCACACCATGTACAGCAGAGTCCGTTCGCTTCCGA
GCCAGAACAGAAGACCAGGATGAAGCAACCTTGCCAGCGAGCCACGTACT
AGTAATATTTAAGGAACCGGGTCCGAGAATCGATGGCGTCGTATCAGCAC
AGCAAGTCAGTCCGTTGTCCAATCGGCCCATCTAGCCAGCCAATCAATCA
TGCACGCACACTTCCGGCGTACAATACGGTAGATATGATACCATATTTCA
TTTCCTTGCTGCCTTGTTGCTTTTCGCGCACGATCACCAACTACCATATA
TTTCGTATCCCTTTTGGGTGTTTTTCGTCCCCTTTTGCTGCGTGTTGTTT
CGGCTACTCAGTCGGCCGATGCTGCTGCTCCTCAGCCCGCCAGCAAGCGA
GTCAGAAATAGCACACCATCGGCGGCGCCAACGGCGACTGCGCCGATCGC
GAACGGTGGCGGTAGGCCCGCCGCCGTCGCAGGTGCAGGGAGGAGGCCGC
CCGTGCCGCCGCCGGCAGCGGCAGCGGCGGCAGCCTCGGCGTCGGCGTCA
CGAACACCAGCAGGAGCACGAGCAGGAGCAGGTGGCCGAGGAAGCGCAGG
ACAAGGGTCTGGTGTAGCCTTCCGTTCTTCAGCCGCTAACGGAGCAGTAG
GCGCGCCGGCGGCGGCGGCCACGGCCACGGCTACGGCGCCGTCGTTTGGG
GCCTCCGTGATCGGTAACAATGAACGCGCGGCGGCAGCCCTCGCGGCGGA
GCAGGTGAAGGCGCAGCAGGCGCGGCCGCGGCCGCAGGCGTCCCCATCGG
CTGCCTCCTCTCCGGTACCCGCCGCTCGCCTCCGATGTGTAACGGGGCCC
GAGTCTTCCAACGGCGATGGCGACGGCGACGACGGTGGCGGTAGCGGCGG
TAGTGGCGGTGGGGGCGACCTGCTGGCG
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Coding sequence (CDS) from alignment at P-littoralis_Contig16:121868..125645+

>mRNA_P-littoralis_Contig16.34.1 ID=mRNA_P-littoralis_Contig16.34.1|Name=mRNA_P-littoralis_Contig16.34.1|organism=Pylaiella littoralis U1_48|type=CDS|length=972bp|location=Sequence derived from alignment at P-littoralis_Contig16:121868..125645+ (Pylaiella littoralis U1_48)
ATGCCTCCAAAATCAGGACGGAAGCGCGGTCGAGACTCAACGGGGAGTAC
CGGCACGCCGAGCCCTGAATCACAGAACCAGCCTTCCTCCGCTCTGCCGG
GATCTGCGCCGCCCGCTGCGTCCTTCTCTCGCACCATGAGATCTAACAGC
AATAGTTCGCAGCAGGAGGACGATGCCGGCGGAAGCGGCAGCAGCGGTGG
TGGTGGCGATCCTCGTGCAACCAAGCGGAGCAGGCATGGCGGGCCGGCTG
GCCGCGAGGCGGACTCCAGCGGCGATGTTGGCATGGGCGAGGTGACTAAC
GTCGTGACAAAGACACCAACAGCTGCTGCTGCTGCTGCTTCTGCCGGTGC
CAAGAAGGGAGGCGGTCGGCGTAAGAGCACCAGTGTCGTTGTGGCAAACG
GCAATTCGGCCGATGCTGCTGCTCCTCAGCCCGCCAGCAAGCGAGTCAGA
AATAGCACACCATCGGCGGCGCCAACGGCGACTGCGCCGATCGCGAACGG
TGGCGGTAGGCCCGCCGCCGTCGCAGGTGCAGGGAGGAGGCCGCCCGTGC
CGCCGCCGGCAGCGGCAGCGGCGGCAGCCTCGGCGTCGGCGTCACGAACA
CCAGCAGGAGCACGAGCAGGAGCAGGTGGCCGAGGAAGCGCAGGACAAGG
GTCTGGTGTAGCCTTCCGTTCTTCAGCCGCTAACGGAGCAGTAGGCGCGC
CGGCGGCGGCGGCCACGGCCACGGCTACGGCGCCGTCGTTTGGGGCCTCC
GTGATCGGTAACAATGAACGCGCGGCGGCAGCCCTCGCGGCGGAGCAGGT
GAAGGCGCAGCAGGCGCGGCCGCGGCCGCAGGCGTCCCCATCGGCTGCCT
CCTCTCCGGTACCCGCCGCTCGCCTCCGATGTGTAACGGGGCCCGAGTCT
TCCAACGGCGATGGCGACGGCGACGACGGTGGCGGTAGCGGCGGTAGTGG
CGGTGGGGGCGACCTGCTGGCG
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