mRNA_P-littoralis_Contig16.28.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig16.28.1
Unique NamemRNA_P-littoralis_Contig16.28.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig16.28.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig16contigP-littoralis_Contig16:106645..107209 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size470
Hectar predicted targeting categoryother localisation
Exons2
Cds size453
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789763.0012755-UTR-P-littoralis_Contig16:106644..1066521680789763.0012755-UTR-P-littoralis_Contig16:106644..106652Pylaiella littoralis U1_48UTRP-littoralis_Contig16 106645..106652 -
1680789763.049093-UTR-P-littoralis_Contig16:107200..1072091680789763.049093-UTR-P-littoralis_Contig16:107200..107209Pylaiella littoralis U1_48UTRP-littoralis_Contig16 107201..107209 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789763.0209162-CDS-P-littoralis_Contig16:106652..1068531680789763.0209162-CDS-P-littoralis_Contig16:106652..106853Pylaiella littoralis U1_48CDSP-littoralis_Contig16 106653..106853 -
1680789763.0377984-CDS-P-littoralis_Contig16:106948..1072001680789763.0377984-CDS-P-littoralis_Contig16:106948..107200Pylaiella littoralis U1_48CDSP-littoralis_Contig16 106949..107200 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig16.28.1prot_P-littoralis_Contig16.28.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig16 106653..107200 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig16.28.1

>prot_P-littoralis_Contig16.28.1 ID=prot_P-littoralis_Contig16.28.1|Name=mRNA_P-littoralis_Contig16.28.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=151bp
MDGWMDGAGRSLNTQHVGCARPRACVRACGCVSLFLCPVGAFFPSFVSFH
FFRAEKGRNEINARVVAERAGCGVPAVYACIWGVPFNIFRPLSQHARGGM
YILRIEGRGSQVNTRRCVRPSTFFFFSLEGVPVVFFFSSELQKLLVSNRC
*
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mRNA from alignment at P-littoralis_Contig16:106645..107209-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig16.28.1 ID=mRNA_P-littoralis_Contig16.28.1|Name=mRNA_P-littoralis_Contig16.28.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=565bp|location=Sequence derived from alignment at P-littoralis_Contig16:106645..107209- (Pylaiella littoralis U1_48)
GGAAGACCAATGGATGGATGGATGGATGGAGCTGGTCGGAGTCTCAACAC
TCAACACGTCGGCTGCGCTCGCCCTCGTGCGTGCGTGCGTGCGTGTGGGT
GTGTTTCTTTGTTTCTTTGTCCCGTGGGTGCATTCTTCCCCTCTTTCGTT
TCTTTTCATTTTTTTCGCGCCGAAAAGGGGCGCAACGAGATAAACGCACG
TGTCGTGGCTGAACGGGCGGGTTGTGGGGTCCCGGCGGTGTACGCATGCA
TTTGGGGGGTGGGGGGGTGTTTACACTCGCCGCATCCCCCCCCCCCCGGT
CCACGCAAGGGCGCAGTAGAACTCTTTTTTTTTATGTATTTTCGGGCGTA
GCGTAACCCTTCAATATTTTCCGTCCATTATCCCAACATGCTCGAGGAGG
CATGTATATACTTCGCATAGAGGGTAGAGGGAGTCAAGTCAACACACGGC
GGTGTGTACGGCCAAGCACATTTTTTTTTTTTTCCCTCGAGGGAGTTCCG
GTTGTCTTTTTTTTTTCGAGTGAACTGCAGAAATTACTTGTTTCGAATAG
GTGTTGAAGATCCTC
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Coding sequence (CDS) from alignment at P-littoralis_Contig16:106645..107209-

>mRNA_P-littoralis_Contig16.28.1 ID=mRNA_P-littoralis_Contig16.28.1|Name=mRNA_P-littoralis_Contig16.28.1|organism=Pylaiella littoralis U1_48|type=CDS|length=453bp|location=Sequence derived from alignment at P-littoralis_Contig16:106645..107209- (Pylaiella littoralis U1_48)
ATGGATGGATGGATGGATGGAGCTGGTCGGAGTCTCAACACTCAACACGT
CGGCTGCGCTCGCCCTCGTGCGTGCGTGCGTGCGTGTGGGTGTGTTTCTT
TGTTTCTTTGTCCCGTGGGTGCATTCTTCCCCTCTTTCGTTTCTTTTCAT
TTTTTTCGCGCCGAAAAGGGGCGCAACGAGATAAACGCACGTGTCGTGGC
TGAACGGGCGGGTTGTGGGGTCCCGGCGGTGTACGCATGCATTTGGGGGG
TGCCCTTCAATATTTTCCGTCCATTATCCCAACATGCTCGAGGAGGCATG
TATATACTTCGCATAGAGGGTAGAGGGAGTCAAGTCAACACACGGCGGTG
TGTACGGCCAAGCACATTTTTTTTTTTTTCCCTCGAGGGAGTTCCGGTTG
TCTTTTTTTTTTCGAGTGAACTGCAGAAATTACTTGTTTCGAATAGGTGT
TGA
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