mRNA_P-littoralis_Contig1598.4.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig1598.4.1
Unique NamemRNA_P-littoralis_Contig1598.4.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
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BLAST of mRNA_P-littoralis_Contig1598.4.1 vs. uniprot
Match: A0A6H5JPK8_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JPK8_9PHAE)

HSP 1 Score: 58.2 bits (139), Expect = 5.070e-8
Identity = 30/70 (42.86%), Postives = 43/70 (61.43%), Query Frame = 1 
Query:   16 VRSAVTEDGTEEWVSDNGATHHTTGSSEHMYDMHPPPPRSSQIVVGSGTVLNVSAVGSLNLRFHMDNTMG 225
            V S+    G+E WV+D+GA++  T SS HMYD+   P     +VVG G +L V A+GS+NL F  ++  G
Sbjct:  345 VESSEGPPGSERWVADSGASNSFTNSSLHMYDLQEIPASRKYVVVGDGRLLEVQAIGSINLSFFQEDENG 414
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BLAST of mRNA_P-littoralis_Contig1598.4.1 vs. uniprot
Match: A0A6H5J8D5_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J8D5_9PHAE)

HSP 1 Score: 57.8 bits (138), Expect = 6.920e-8
Identity = 29/63 (46.03%), Postives = 41/63 (65.08%), Query Frame = 1 
Query:   16 VRSAVTEDGTEEWVSDNGATHHTTGSSEHMYDMHPPPPRSSQIVVGSGTVLNVSAVGSLNLRF 204
            V+S+    G+E WV+D+GA++  T SS HMYD+   P     +VVG G +L V A+GS+NL F
Sbjct:  274 VKSSEGPPGSERWVADSGASNSFTNSSLHMYDLQEIPASRKYVVVGDGRLLEVQAIGSINLSF 336
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BLAST of mRNA_P-littoralis_Contig1598.4.1 vs. uniprot
Match: A0A6H5K0G7_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K0G7_9PHAE)

HSP 1 Score: 57.0 bits (136), Expect = 1.300e-7
Identity = 30/70 (42.86%), Postives = 43/70 (61.43%), Query Frame = 1 
Query:   16 VRSAVTEDGTEEWVSDNGATHHTTGSSEHMYDMHPPPPRSSQIVVGSGTVLNVSAVGSLNLRFHMDNTMG 225
            V S+    G+E WV+D+GA++  T SS HMYD+   P     +VVG G +L V A+GS+NL F  ++  G
Sbjct:  219 VDSSEGPPGSERWVADSGASNSFTDSSLHMYDLQAIPASRKYVVVGDGRMLEVQAIGSINLSFFQEDENG 288
[Close]
BLAST of mRNA_P-littoralis_Contig1598.4.1 vs. uniprot
Match: A0A6H5JN35_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JN35_9PHAE)

HSP 1 Score: 57.0 bits (136), Expect = 1.310e-7
Identity = 29/70 (41.43%), Postives = 43/70 (61.43%), Query Frame = 1 
Query:   16 VRSAVTEDGTEEWVSDNGATHHTTGSSEHMYDMHPPPPRSSQIVVGSGTVLNVSAVGSLNLRFHMDNTMG 225
            V S+    G+E WV+D+GA++  T +S HMYD+   P     +VVG G +L V A+GS+NL F  ++  G
Sbjct:  449 VESSEGPPGSERWVADSGASNSFTNNSLHMYDLEEIPASRKYVVVGDGRLLEVQAIGSINLTFFQEDENG 518
[Close]
BLAST of mRNA_P-littoralis_Contig1598.4.1 vs. uniprot
Match: A0A6H5KPB2_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KPB2_9PHAE)

HSP 1 Score: 54.7 bits (130), Expect = 8.270e-7
Identity = 29/70 (41.43%), Postives = 43/70 (61.43%), Query Frame = 1 
Query:   16 VRSAVTEDGTEEWVSDNGATHHTTGSSEHMYDMHPPPPRSSQIVVGSGTVLNVSAVGSLNLRFHMDNTMG 225
            V+S+    G+E WV+D+GA++  T SS HMYD+         +VVG G +L V A+GS+NL F  ++  G
Sbjct:  208 VKSSERPPGSERWVADSGASNSFTNSSIHMYDLKKILASRKYVVVGDGRLLEVQAIGSINLGFFQEDENG 277
[Close]
BLAST of mRNA_P-littoralis_Contig1598.4.1 vs. uniprot
Match: A0A6H5LCK7_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LCK7_9PHAE)

HSP 1 Score: 54.7 bits (130), Expect = 8.320e-7
Identity = 29/70 (41.43%), Postives = 40/70 (57.14%), Query Frame = 1 
Query:   16 VRSAVTEDGTEEWVSDNGATHHTTGSSEHMYDMHPPPPRSSQIVVGSGTVLNVSAVGSLNLRFHMDNTMG 225
            V S     G E WV+D+GA++    SS HMYD+   P     +VVG G +L V A+GS+NL F  ++  G
Sbjct:  199 VESREGPPGRERWVADSGASNSFANSSLHMYDLQEIPASRKYVVVGDGQLLEVQAIGSINLSFFQEDENG 268
[Close]
BLAST of mRNA_P-littoralis_Contig1598.4.1 vs. uniprot
Match: A0A6H5JVW1_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JVW1_9PHAE)

HSP 1 Score: 53.5 bits (127), Expect = 2.130e-6
Identity = 29/70 (41.43%), Postives = 41/70 (58.57%), Query Frame = 1 
Query:   16 VRSAVTEDGTEEWVSDNGATHHTTGSSEHMYDMHPPPPRSSQIVVGSGTVLNVSAVGSLNLRFHMDNTMG 225
            V S+    G+E WV+D+GA +  T SS HMYD+   P     +VVG G +L V A+GS+NL    ++  G
Sbjct:   95 VESSDGPPGSERWVADSGAGNSFTNSSLHMYDLQEIPASRKYVVVGDGRLLEVQAMGSINLSLFQEDENG 164
[Close]
BLAST of mRNA_P-littoralis_Contig1598.4.1 vs. uniprot
Match: A0A6H5KJ00_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KJ00_9PHAE)

HSP 1 Score: 52.4 bits (124), Expect = 2.200e-6
Identity = 28/70 (40.00%), Postives = 42/70 (60.00%), Query Frame = 1 
Query:   16 VRSAVTEDGTEEWVSDNGATHHTTGSSEHMYDMHPPPPRSSQIVVGSGTVLNVSAVGSLNLRFHMDNTMG 225
            V S+    G+E WV+++GA++  T SS HMYD+   P     +VV  G +L V A+GS+NL F  ++  G
Sbjct:   75 VESSGGPPGSERWVAESGASNTFTNSSLHMYDLQEIPASRKYVVVVDGRLLEVQAIGSINLSFFQEDENG 144
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig1598.4.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 8
Match NameE-valueIdentityDescription
A0A6H5JPK8_9PHAE5.070e-842.86Integrase catalytic domain-containing protein n=1 ... [more]
A0A6H5J8D5_9PHAE6.920e-846.03Integrase catalytic domain-containing protein n=1 ... [more]
A0A6H5K0G7_9PHAE1.300e-742.86Integrase catalytic domain-containing protein n=1 ... [more]
A0A6H5JN35_9PHAE1.310e-741.43Uncharacterized protein n=2 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KPB2_9PHAE8.270e-741.43Integrase catalytic domain-containing protein n=1 ... [more]
A0A6H5LCK7_9PHAE8.320e-741.43Integrase catalytic domain-containing protein n=1 ... [more]
A0A6H5JVW1_9PHAE2.130e-641.43Integrase catalytic domain-containing protein n=1 ... [more]
A0A6H5KJ00_9PHAE2.200e-640.00Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig1598contigP-littoralis_Contig1598:3322..3563 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size243
Hectar predicted targeting categoryother localisation
Exons1
Cds size240
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789762.8810427-CDS-P-littoralis_Contig1598:3321..35611680789762.8810427-CDS-P-littoralis_Contig1598:3321..3561Pylaiella littoralis U1_48CDSP-littoralis_Contig1598 3322..3561 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig1598.4.1prot_P-littoralis_Contig1598.4.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig1598 3322..3561 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig1598.4.1

>prot_P-littoralis_Contig1598.4.1 ID=prot_P-littoralis_Contig1598.4.1|Name=mRNA_P-littoralis_Contig1598.4.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=80bp
FNQPTVRSAVTEDGTEEWVSDNGATHHTTGSSEHMYDMHPPPPRSSQIVV
GSGTVLNVSAVGSLNLRFHMDNTMGTSGTT
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mRNA from alignment at P-littoralis_Contig1598:3322..3563+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig1598.4.1 ID=mRNA_P-littoralis_Contig1598.4.1|Name=mRNA_P-littoralis_Contig1598.4.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=242bp|location=Sequence derived from alignment at P-littoralis_Contig1598:3322..3563+ (Pylaiella littoralis U1_48)
TTCAATCAGCCTACTGTACGCAGCGCTGTTACCGAGGATGGGACAGAAGA
GTGGGTATCCGACAACGGGGCCACTCATCACACAACTGGGAGCTCAGAGC
ACATGTACGACATGCATCCCCCACCCCCGCGCAGTTCTCAGATCGTAGTA
GGTAGCGGCACTGTACTCAATGTGTCAGCTGTTGGTAGCCTGAATCTGCG
ATTTCACATGGACAACACCATGGGCACCTCTGGTACTACGTC
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Coding sequence (CDS) from alignment at P-littoralis_Contig1598:3322..3563+

>mRNA_P-littoralis_Contig1598.4.1 ID=mRNA_P-littoralis_Contig1598.4.1|Name=mRNA_P-littoralis_Contig1598.4.1|organism=Pylaiella littoralis U1_48|type=CDS|length=240bp|location=Sequence derived from alignment at P-littoralis_Contig1598:3322..3563+ (Pylaiella littoralis U1_48)
TTCAATCAGCCTACTGTACGCAGCGCTGTTACCGAGGATGGGACAGAAGA
GTGGGTATCCGACAACGGGGCCACTCATCACACAACTGGGAGCTCAGAGC
ACATGTACGACATGCATCCCCCACCCCCGCGCAGTTCTCAGATCGTAGTA
GGTAGCGGCACTGTACTCAATGTGTCAGCTGTTGGTAGCCTGAATCTGCG
ATTTCACATGGACAACACCATGGGCACCTCTGGTACTACG
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