prot_P-littoralis_Contig1595.3.1 (polypeptide) Pylaiella littoralis U1_48

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_P-littoralis_Contig1595.3.1
Unique Nameprot_P-littoralis_Contig1595.3.1
Typepolypeptide
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Sequence length828
Homology
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BLAST of mRNA_P-littoralis_Contig1595.3.1 vs. uniprot
Match: O78798_PYLLI (DNA-directed RNA polymerase n=1 Tax=Pylaiella littoralis TaxID=2885 RepID=O78798_PYLLI)

HSP 1 Score: 1409 bits (3647), Expect = 0.000e+0
Identity = 721/830 (86.87%), Postives = 774/830 (93.25%), Query Frame = 0 
Query:    1 MTKKIQIDNIKSNIEPFISNKTIIFNTLERAKLMLNETSPRSAQYFLEKELEHKLTTNPLSYLAQINNNKIKESKAHLNDLAKKILEKSRLPQELKTFMTSELLTAISLTILTKLFHKTKKSDSRISQTALIRAISDHFIRQLSLQREKQRYKEXXXXXXXXXXXTKLKESSKKKEEQKILKTDTAARTLAAKIVDVLSHPEVNVCKIYRETPSVTRPSKIRTTNYLCLSDKWAGVAKQFENTFTSLPMLCPPLTWELQETNPYNKIESIIQGINLKGGGYLTDSEIQKNKTALLKNATAMYVVCHSEESKDNLNYIQSLAFRINNDLLKIIKENKLLIPNYKENYRITRQTREEYCGSIYQSKKAEIHDSATNYIAETDFAIDIADKLQGLDLHFAVRHDGRGRIYTIAYPISPISANYMRSILTCKEDYYFSKKADRENWESLVLKLTKDLMGNNTKKSVELFKKNPGRAFDKALSDVEVIDDFSLHALKDIFINEGGQTSQLIGLDVTASGLQIMGLITRCRKALEMTQVFDQNDPTQEKVDIYHAIQMHVVRDYPIVQEMDRKTYKGIIMRMSYGEGVYSRKKTLYQYLK--DNKEFKDNKKKGTLLLDMAKAYDQAIYKEFPEFKTFTDQVDKIVNIRTKLNLGINFNISEIFKTNQYYNMDKATTYSFRDFDGKSKRVTMYIPEKITSS-YKRYEANPNARKIKRATLPNFIHHIDSLLAHLVIKEFRKELKPLFTVHDAFYVRLIDMAFLKEAYFKALQQVHDLDPWSKFLETNKISLGDLRNDHWAKKEKDLAQDLNDMISDWVLTREAIDFKRPRSNRILS 827
            MTKKIQIDNIK NI+PFISNKT+IFNTLERAKLMLNETS +SAQYFLE+ELEHKLTTNPL YL Q+NNN+IKESKAHLND AKKILEKSRLP+ELKTFMTSELLTAISLTILTKLFHK    DSRISQTALIRAI DHF+RQLSLQR+K+ YKE           TKLK+SSKKKEEQKILKTDTAARTLAAKIV VLS+PE+++C+IY+E P    PS+IRTTNYLCLSD+W  VAKQ+ENTFT LPMLCPPLTWELQETNPYNKIESIIQGINL+GGGYLTDSEIQKNKTALLKNATAMYVVCHSEESKDNLNYIQSL FRINNDLLKIIKENKLLIPNYKE+Y + +QTR+EYCGS++++++AE HDSATNY+AETDFAIDIADKLQGLDLHFAVRHDGRGRIYTIAYPISPISANYMRSILTCKEDYYFSKK DRENWESLVLKLTKDLMGNNTKKSVELFKKNPGRAFDKALSDVEVIDDFSLHALKDIFINEGGQTSQLIGLDVTASGLQIMGLITRC KALEMTQVFDQN+ T   VDIYHAIQ HVV+ YPIVQEMDRKTYKGIIMRMSYGEGVYSRKKTLY+YLK  +N+EFK NK KGTLLLDMAKAYDQAIYKEFP+FKTFTDQ DKIV+IRTKLNLGINFNIS IFKTNQYYNMDKATTYSFRDFDGKSKR+TMYIPEKITSS Y+RYEA PN RKIKRATLPNFIHHIDSLLAHLVIKEFRKELKPLFTVHDAFYVRLIDMAFLKEAYF+ALQQ+HDLDPWSKFLETNKI+L DLRNDHW++++K LA+DLN MI +W++TREA+DFKRPRSNRILS
Sbjct:    1 MTKKIQIDNIKLNIKPFISNKTMIFNTLERAKLMLNETSAKSAQYFLERELEHKLTTNPLPYLGQVNNNRIKESKAHLNDAAKKILEKSRLPEELKTFMTSELLTAISLTILTKLFHKASAQDSRISQTALIRAILDHFVRQLSLQRDKEIYKEENDGEK-----TKLKKSSKKKEEQKILKTDTAARTLAAKIVGVLSNPEIDICRIYQENPYSKSPSRIRTTNYLCLSDEWVEVAKQYENTFTCLPMLCPPLTWELQETNPYNKIESIIQGINLRGGGYLTDSEIQKNKTALLKNATAMYVVCHSEESKDNLNYIQSLGFRINNDLLKIIKENKLLIPNYKESYMVAQQTRKEYCGSMFKTRRAEEHDSATNYLAETDFAIDIADKLQGLDLHFAVRHDGRGRIYTIAYPISPISANYMRSILTCKEDYYFSKKTDRENWESLVLKLTKDLMGNNTKKSVELFKKNPGRAFDKALSDVEVIDDFSLHALKDIFINEGGQTSQLIGLDVTASGLQIMGLITRCTKALEMTQVFDQNE-TNSAVDIYHAIQKHVVKKYPIVQEMDRKTYKGIIMRMSYGEGVYSRKKTLYEYLKTLENEEFKKNKNKGTLLLDMAKAYDQAIYKEFPKFKTFTDQADKIVSIRTKLNLGINFNISNIFKTNQYYNMDKATTYSFRDFDGKSKRITMYIPEKITSSQYERYEAKPNTRKIKRATLPNFIHHIDSLLAHLVIKEFRKELKPLFTVHDAFYVRLIDMAFLKEAYFQALQQIHDLDPWSKFLETNKITLEDLRNDHWSEEDKALAEDLNHMIDNWMITREAVDFKRPRSNRILS 824
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BLAST of mRNA_P-littoralis_Contig1595.3.1 vs. uniprot
Match: A0A8F0K156_9PHAE (DNA-directed RNA polymerase n=1 Tax=Desmarestia aculeata TaxID=62298 RepID=A0A8F0K156_9PHAE)

HSP 1 Score: 227 bits (578), Expect = 3.650e-64
Identity = 133/296 (44.93%), Postives = 180/296 (60.81%), Query Frame = 0 
Query:  518 MGLITRCRKALEMTQVFDQNDPTQEKVDIYHAIQMHVVRDYPIVQEMDRKTYKGIIMRMSYGEGVYSRKKTLYQYLKDNKEFKDNKKKGTLLLDMAKA---YDQAIYKEFPEFKTFTDQVDKIVNIRTKLNLGINFNISEIFKTNQYYNMDKATTYSFRDFDGKSKRVTMYIPE-----KITSSYKRYEANPNARKIKRATLPNFIHHIDSLLAHLVIKEFRKELKPLFTVHDAFYVRLIDMAFLKEAYFKALQQVHDLDPWSKFLETNKISLGDLRNDHWAKKEKDLAQDLNDMI 805
            M L    +  L +T VF++ +  +E  DIY +I   VV  +PI+ +M RK YK IIM++SYGEG  SR + +  Y +      D   K + +    K    Y  ++Y +FP FK    Q+D I+  R++LNL IN NIS I+KT QYYNMDKA TY+FR +D  SK++ MYIPE     K  ++ KR+EA  N  K+ RAT+PN IH++D++    V   FR+E KPLFTVHD FYVRL D+ F K AYF AL+Q++D  PW   L++NKI   D   D    KEK + Q LND+I
Sbjct:    1 MSLFCSNKNGLRLTNVFNKKNYDEE--DIYKSIHNGVVEKFPILDQMTRKEYKAIIMKLSYGEGNQSRSEDIKDYYRRL----DISTKSSGIASPYKITAEYPSSLYNKFPSFKLLKKQIDIIIAARSELNLPINLNISAIYKTTQYYNMDKAITYTFRGYDNTSKKIKMYIPENELYDKKANTPKRFEAKVNKNKMLRATMPNLIHYLDAIALQHVTTRFREENKPLFTVHDEFYVRLCDIHFTKMAYFNALKQIYDDRPWFSILDSNKIL--DYEIDLNNMKEKMIQQTLNDLI 288
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig1595.3.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
O78798_PYLLI0.000e+086.87DNA-directed RNA polymerase n=1 Tax=Pylaiella litt... [more]
A0A8F0K156_9PHAE3.650e-6444.93DNA-directed RNA polymerase n=1 Tax=Desmarestia ac... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 142..165
NoneNo IPR availableGENE3D1.10.150.20coord: 521..716
e-value: 3.3E-7
score: 32.2
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 150..172
IPR037159DNA-directed RNA polymerase, N-terminal domain superfamilyGENE3D1.10.1320.10coord: 11..318
e-value: 8.8E-7
score: 30.3
IPR002092DNA-directed RNA polymerase, phage-typePFAMPF00940RNA_polcoord: 506..796
e-value: 1.3E-11
score: 44.0
IPR002092DNA-directed RNA polymerase, phage-typePANTHERPTHR10102DNA-DIRECTED RNA POLYMERASE, MITOCHONDRIALcoord: 37..429
IPR043502DNA/RNA polymerase superfamilySUPERFAMILY56672DNA/RNA polymerasescoord: 36..768

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig1595contigP-littoralis_Contig1595:2444..4927 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Pylaiella littoralis U1_48 OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig1595.3.1mRNA_P-littoralis_Contig1595.3.1Pylaiella littoralis U1_48mRNAP-littoralis_Contig1595 2444..4927 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_P-littoralis_Contig1595.3.1 ID=prot_P-littoralis_Contig1595.3.1|Name=mRNA_P-littoralis_Contig1595.3.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=828bp
MTKKIQIDNIKSNIEPFISNKTIIFNTLERAKLMLNETSPRSAQYFLEKE
LEHKLTTNPLSYLAQINNNKIKESKAHLNDLAKKILEKSRLPQELKTFMT
SELLTAISLTILTKLFHKTKKSDSRISQTALIRAISDHFIRQLSLQREKQ
RYKEKKDDKKSNEKETKLKESSKKKEEQKILKTDTAARTLAAKIVDVLSH
PEVNVCKIYRETPSVTRPSKIRTTNYLCLSDKWAGVAKQFENTFTSLPML
CPPLTWELQETNPYNKIESIIQGINLKGGGYLTDSEIQKNKTALLKNATA
MYVVCHSEESKDNLNYIQSLAFRINNDLLKIIKENKLLIPNYKENYRITR
QTREEYCGSIYQSKKAEIHDSATNYIAETDFAIDIADKLQGLDLHFAVRH
DGRGRIYTIAYPISPISANYMRSILTCKEDYYFSKKADRENWESLVLKLT
KDLMGNNTKKSVELFKKNPGRAFDKALSDVEVIDDFSLHALKDIFINEGG
QTSQLIGLDVTASGLQIMGLITRCRKALEMTQVFDQNDPTQEKVDIYHAI
QMHVVRDYPIVQEMDRKTYKGIIMRMSYGEGVYSRKKTLYQYLKDNKEFK
DNKKKGTLLLDMAKAYDQAIYKEFPEFKTFTDQVDKIVNIRTKLNLGINF
NISEIFKTNQYYNMDKATTYSFRDFDGKSKRVTMYIPEKITSSYKRYEAN
PNARKIKRATLPNFIHHIDSLLAHLVIKEFRKELKPLFTVHDAFYVRLID
MAFLKEAYFKALQQVHDLDPWSKFLETNKISLGDLRNDHWAKKEKDLAQD
LNDMISDWVLTREAIDFKRPRSNRILS*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR037159RNA_POL_N_sf
IPR002092DNA-dir_Rpol_phage-type
IPR043502DNA/RNA_pol_sf