mRNA_P-littoralis_Contig1595.1.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig1595.1.1
Unique NamemRNA_P-littoralis_Contig1595.1.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
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BLAST of mRNA_P-littoralis_Contig1595.1.1 vs. uniprot
Match: O78800_PYLLI (Uncharacterized protein n=1 Tax=Pylaiella littoralis TaxID=2885 RepID=O78800_PYLLI)

HSP 1 Score: 214 bits (544), Expect = 2.930e-67
Identity = 111/118 (94.07%), Postives = 114/118 (96.61%), Query Frame = 3 
Query:  111 MNLETKSSPLQLVVNILYYSLISALSCLVVYVIFSGLNELMNSYYANRLSILEMEYKVKSFSTDVLSSVQNTFQNTIKP--TPEKQGWIAWLKPVWVSLATLSVRYLVSLCCHMLPGA 458
            MNLETKSSPLQLVVNILYYS ISALSCLVVYVIFSGLNELMNSYYANRLSILEMEYKVKSFSTDVLSSVQNT Q+T+KP  TPEKQGWIAWLKPVWVSLATLSVRY+VSLCCHMLPGA
Sbjct:    1 MNLETKSSPLQLVVNILYYSFISALSCLVVYVIFSGLNELMNSYYANRLSILEMEYKVKSFSTDVLSSVQNTLQSTLKPSPTPEKQGWIAWLKPVWVSLATLSVRYIVSLCCHMLPGA 118
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BLAST of mRNA_P-littoralis_Contig1595.1.1 vs. uniprot
Match: O78801_PYLLI (Uncharacterized protein n=2 Tax=Pylaiella littoralis TaxID=2885 RepID=O78801_PYLLI)

HSP 1 Score: 169 bits (427), Expect = 4.660e-49
Identity = 91/135 (67.41%), Postives = 103/135 (76.30%), Query Frame = 3 
Query:  456 ALFNMTLLGPCLKLIIHGPEGFFVEPLTPGEIQERFQFLSEAGQSLNNNCVERNQNITAAMNLIGVAMDDMRARIGALESGGSVDAIN-----LNRARTHEESMNEISRMLDGISGSDGGVFRDEENDTTGIFGD 845
            +LFNMTLLGPCLKLIIHGPEGFFVEPLTPGEIQERFQFLSEAGQSLNNNCVERNQN T +   I  A++ MR +I  LESG S++ IN     L +ART EE  N++S +L GIS S G V  D  ND+TGIF D
Sbjct:   23 SLFNMTLLGPCLKLIIHGPEGFFVEPLTPGEIQERFQFLSEAGQSLNNNCVERNQNTTESFAAIATALELMRDKIRILESGRSINTINNGLGDLPQARTQEELDNQVSDLLSGISRSTGEVVPDAINDSTGIFDD 157
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BLAST of mRNA_P-littoralis_Contig1595.1.1 vs. uniprot
Match: O78799_PYLLI (Uncharacterized protein n=1 Tax=Pylaiella littoralis TaxID=2885 RepID=O78799_PYLLI)

HSP 1 Score: 73.6 bits (179), Expect = 8.390e-12
Identity = 34/35 (97.14%), Postives = 35/35 (100.00%), Query Frame = 2 
Query:    2 GNVHANNSVKYIKMIFLDVNNEKCRVDSILPPEKL 106
            GNVHANNSVKYIKMIFLDVNN+KCRVDSILPPEKL
Sbjct:  199 GNVHANNSVKYIKMIFLDVNNKKCRVDSILPPEKL 233
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BLAST of mRNA_P-littoralis_Contig1595.1.1 vs. uniprot
Match: O78802_PYLLI (Uncharacterized protein n=1 Tax=Pylaiella littoralis TaxID=2885 RepID=O78802_PYLLI)

HSP 1 Score: 65.5 bits (158), Expect = 5.300e-10
Identity = 30/31 (96.77%), Postives = 31/31 (100.00%), Query Frame = 2 
Query:    2 GNVHANNSVKYIKMIFLDVNNEKCRVDSILP 94
            GNVHANNSVKYIKMIFLDVNN+KCRVDSILP
Sbjct:   73 GNVHANNSVKYIKMIFLDVNNKKCRVDSILP 103
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig1595.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
O78800_PYLLI2.930e-6794.07Uncharacterized protein n=1 Tax=Pylaiella littoral... [more]
O78801_PYLLI4.660e-4967.41Uncharacterized protein n=2 Tax=Pylaiella littoral... [more]
O78799_PYLLI8.390e-1297.14Uncharacterized protein n=1 Tax=Pylaiella littoral... [more]
O78802_PYLLI5.300e-1096.77Uncharacterized protein n=1 Tax=Pylaiella littoral... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig1595contigP-littoralis_Contig1595:294..1141 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size848
Hectar predicted targeting categorysignal anchor
Exons1
Cds size738
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789762.783726-UTR-P-littoralis_Contig1595:293..4031680789762.783726-UTR-P-littoralis_Contig1595:293..403Pylaiella littoralis U1_48UTRP-littoralis_Contig1595 294..403 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789762.7929552-CDS-P-littoralis_Contig1595:403..11411680789762.7929552-CDS-P-littoralis_Contig1595:403..1141Pylaiella littoralis U1_48CDSP-littoralis_Contig1595 404..1141 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig1595.1.1prot_P-littoralis_Contig1595.1.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig1595 404..1141 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig1595.1.1

>prot_P-littoralis_Contig1595.1.1 ID=prot_P-littoralis_Contig1595.1.1|Name=mRNA_P-littoralis_Contig1595.1.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=246bp
MNLETKSSPLQLVVNILYYSLISALSCLVVYVIFSGLNELMNSYYANRLS
ILEMEYKVKSFSTDVLSSVQNTFQNTIKPTPEKQGWIAWLKPVWVSLATL
SVRYLVSLCCHMLPGALFNMTLLGPCLKLIIHGPEGFFVEPLTPGEIQER
FQFLSEAGQSLNNNCVERNQNITAAMNLIGVAMDDMRARIGALESGGSVD
AINLNRARTHEESMNEISRMLDGISGSDGGVFRDEENDTTGIFGD*
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mRNA from alignment at P-littoralis_Contig1595:294..1141+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig1595.1.1 ID=mRNA_P-littoralis_Contig1595.1.1|Name=mRNA_P-littoralis_Contig1595.1.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=848bp|location=Sequence derived from alignment at P-littoralis_Contig1595:294..1141+ (Pylaiella littoralis U1_48)
AGGAAATGTTCATGCCAACAACAGCGTTAAATATATAAAAATGATATTTC
TTGACGTGAATAATGAAAAATGCAGAGTAGATTCGATTCTTCCCCCAGAA
AAGCTATAAAATGAATTTAGAAACAAAATCATCCCCTTTACAACTAGTTG
TTAATATTTTGTATTATTCTCTTATTTCGGCTCTTAGTTGCTTGGTTGTT
TATGTGATATTTTCTGGTTTGAATGAGTTGATGAATTCGTATTATGCAAA
TCGTTTAAGTATTCTTGAGATGGAATATAAGGTTAAATCCTTTTCGACAG
ATGTTTTAAGCAGTGTTCAAAACACTTTTCAGAACACCATTAAGCCCACT
CCCGAGAAACAGGGGTGGATTGCCTGGCTAAAGCCTGTATGGGTCTCACT
TGCTACTTTAAGCGTAAGATATCTTGTGAGTCTTTGTTGCCATATGTTGC
CTGGAGCCCTTTTTAACATGACTCTTCTGGGACCCTGTTTAAAGCTTATT
ATACATGGACCGGAAGGCTTTTTCGTAGAACCTTTGACCCCTGGTGAGAT
TCAAGAGAGATTTCAATTTTTAAGCGAAGCAGGCCAATCCCTAAATAACA
ATTGTGTTGAGAGAAATCAAAATATTACGGCTGCCATGAACCTTATTGGT
GTTGCAATGGATGATATGAGAGCAAGAATTGGTGCTTTAGAGTCGGGTGG
TTCAGTAGATGCAATAAATCTAAACAGGGCAAGAACTCATGAAGAAAGCA
TGAATGAAATAAGTAGAATGCTCGACGGTATTTCAGGGAGTGACGGTGGG
GTGTTCAGAGATGAAGAAAATGACACCACCGGAATTTTCGGTGATTAA
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Coding sequence (CDS) from alignment at P-littoralis_Contig1595:294..1141+

>mRNA_P-littoralis_Contig1595.1.1 ID=mRNA_P-littoralis_Contig1595.1.1|Name=mRNA_P-littoralis_Contig1595.1.1|organism=Pylaiella littoralis U1_48|type=CDS|length=738bp|location=Sequence derived from alignment at P-littoralis_Contig1595:294..1141+ (Pylaiella littoralis U1_48)
ATGAATTTAGAAACAAAATCATCCCCTTTACAACTAGTTGTTAATATTTT
GTATTATTCTCTTATTTCGGCTCTTAGTTGCTTGGTTGTTTATGTGATAT
TTTCTGGTTTGAATGAGTTGATGAATTCGTATTATGCAAATCGTTTAAGT
ATTCTTGAGATGGAATATAAGGTTAAATCCTTTTCGACAGATGTTTTAAG
CAGTGTTCAAAACACTTTTCAGAACACCATTAAGCCCACTCCCGAGAAAC
AGGGGTGGATTGCCTGGCTAAAGCCTGTATGGGTCTCACTTGCTACTTTA
AGCGTAAGATATCTTGTGAGTCTTTGTTGCCATATGTTGCCTGGAGCCCT
TTTTAACATGACTCTTCTGGGACCCTGTTTAAAGCTTATTATACATGGAC
CGGAAGGCTTTTTCGTAGAACCTTTGACCCCTGGTGAGATTCAAGAGAGA
TTTCAATTTTTAAGCGAAGCAGGCCAATCCCTAAATAACAATTGTGTTGA
GAGAAATCAAAATATTACGGCTGCCATGAACCTTATTGGTGTTGCAATGG
ATGATATGAGAGCAAGAATTGGTGCTTTAGAGTCGGGTGGTTCAGTAGAT
GCAATAAATCTAAACAGGGCAAGAACTCATGAAGAAAGCATGAATGAAAT
AAGTAGAATGCTCGACGGTATTTCAGGGAGTGACGGTGGGGTGTTCAGAG
ATGAAGAAAATGACACCACCGGAATTTTCGGTGATTAA
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