mRNA_P-littoralis_Contig159.110.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig159.110.1
Unique NamemRNA_P-littoralis_Contig159.110.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
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BLAST of mRNA_P-littoralis_Contig159.110.1 vs. uniprot
Match: A0A6H5J557_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J557_9PHAE)

HSP 1 Score: 68.6 bits (166), Expect = 9.490e-12
Identity = 34/66 (51.52%), Postives = 44/66 (66.67%), Query Frame = 1 
Query:   31 TDDLSAMLLTTIGNCSKENSKHLAMVQNAAVYSQCLVTKPKIGTTNTEGRDAHAKQNYLDHTVPGF 228
            +DDL   L  T     K+  KHL+++QNAA Y QCLVTK + GT +T+ RDAHA+ NY + TVP F
Sbjct:   14 SDDLLEYLSHT-----KQTPKHLSLIQNAAAYYQCLVTKREAGTMSTQQRDAHARTNYKNFTVPSF 74
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig159.110.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5J557_9PHAE9.490e-1251.52Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig159contigP-littoralis_Contig159:482271..482501 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size233
Hectar predicted targeting categoryother localisation
Exons1
Cds size231
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789762.6492414-CDS-P-littoralis_Contig159:482270..4825011680789762.6492414-CDS-P-littoralis_Contig159:482270..482501Pylaiella littoralis U1_48CDSP-littoralis_Contig159 482271..482501 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig159.110.1prot_P-littoralis_Contig159.110.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig159 482271..482501 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig159.110.1

>prot_P-littoralis_Contig159.110.1 ID=prot_P-littoralis_Contig159.110.1|Name=mRNA_P-littoralis_Contig159.110.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=77bp
MEEKFALPLVTDDLSAMLLTTIGNCSKENSKHLAMVQNAAVYSQCLVTKP
KIGTTNTEGRDAHAKQNYLDHTVPGFF
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mRNA from alignment at P-littoralis_Contig159:482271..482501+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig159.110.1 ID=mRNA_P-littoralis_Contig159.110.1|Name=mRNA_P-littoralis_Contig159.110.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=231bp|location=Sequence derived from alignment at P-littoralis_Contig159:482271..482501+ (Pylaiella littoralis U1_48)
ATGGAGGAAAAATTTGCTCTACCCCTGGTCACTGATGATCTCTCGGCTAT
GCTGCTCACAACCATCGGGAATTGTTCCAAGGAGAACTCCAAGCATCTAG
CGATGGTTCAAAACGCGGCTGTGTACTCTCAGTGCCTCGTGACGAAGCCC
AAGATCGGCACCACAAACACCGAAGGACGGGATGCACACGCAAAGCAGAA
CTACCTCGACCACACCGTTCCTGGTTTCTTT
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Coding sequence (CDS) from alignment at P-littoralis_Contig159:482271..482501+

>mRNA_P-littoralis_Contig159.110.1 ID=mRNA_P-littoralis_Contig159.110.1|Name=mRNA_P-littoralis_Contig159.110.1|organism=Pylaiella littoralis U1_48|type=CDS|length=231bp|location=Sequence derived from alignment at P-littoralis_Contig159:482271..482501+ (Pylaiella littoralis U1_48)
ATGGAGGAAAAATTTGCTCTACCCCTGGTCACTGATGATCTCTCGGCTAT
GCTGCTCACAACCATCGGGAATTGTTCCAAGGAGAACTCCAAGCATCTAG
CGATGGTTCAAAACGCGGCTGTGTACTCTCAGTGCCTCGTGACGAAGCCC
AAGATCGGCACCACAAACACCGAAGGACGGGATGCACACGCAAAGCAGAA
CTACCTCGACCACACCGTTCCTGGTTTCTTT
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