mRNA_P-littoralis_Contig159.107.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig159.107.1
Unique NamemRNA_P-littoralis_Contig159.107.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
BLAST of mRNA_P-littoralis_Contig159.107.1 vs. uniprot
Match: A0A6H5KSI7_9PHAE (DDE Tnp4 domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KSI7_9PHAE)

HSP 1 Score: 333 bits (855), Expect = 6.410e-108
Identity = 161/236 (68.22%), Postives = 187/236 (79.24%), Query Frame = 3
Query:  705 GNCFD-INQLSLMSKSMAAATFHKFCKNFAKEMFGEHMYLPTGTYQDEVVDCYRKLGFTAAIGSTDVTHVGWGMCPFTLGRSFTGKEGFPTLAFEVTVDHAGRAIGVTQEFTGATNDKTIVRYDAAVQTIRNNKVYKDREYKLRRADGTEFTRKGCYLIVDNGYHEVSVLGAWYPGDVDDAAFSKMLESVRKDVECFFGILKGRFRILKLRLAYHCREDIDNIFFTCCILHNMLHS 1409
            GNCFD + QLS MS+S+A A FHKFC++ A EMF EH+YLPTGTY DEV+  + +LG T A GSTDVTH+G  MCPFTLGRSFTGKEGFPT+A+EVTVDHAGRA+ VT  F G TNDKT +RYD+ V  IR    Y +REYKLR+ +GTE TR+GC+LIVDNGY+E +          +D AFS+ LESVRKDVECFFGILKGRFRILKLR+ YH RE IDNIFFTCCILHNMLH+
Sbjct:  143 GNCFDDVEQLSKMSESIAQALFHKFCRHSAAEMFDEHIYLPTGTYLDEVMGIFHQLGCTGACGSTDVTHIGRNMCPFTLGRSFTGKEGFPTIAYEVTVDHAGRALAVTNGFAGGTNDKTTIRYDSGVNKIRTESQYTEREYKLRKVNGTERTRRGCFLIVDNGYYESN----------EDTAFSRHLESVRKDVECFFGILKGRFRILKLRMPYHKREYIDNIFFTCCILHNMLHT 368          
BLAST of mRNA_P-littoralis_Contig159.107.1 vs. uniprot
Match: A0A6H5K796_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K796_9PHAE)

HSP 1 Score: 330 bits (846), Expect = 1.410e-106
Identity = 162/242 (66.94%), Postives = 189/242 (78.10%), Query Frame = 3
Query:  705 GNCFD-INQLSLMSKSMAAATFHKFCKNFAKEMFGEHMYLPTGTYQDEVVDCYRKLGFTAAIGSTDVTHVGWGMCPFTLGRSFTGKEGFPTLAFEVTVDHAGRAIGVTQEFTGATNDKTIVRYDAAVQTIRNNKVYKDREYKLRRADGTEFTRKGCYLIVDNGYHEVSVLGA--WYPGDVDDAAFSKMLESVRKDVECFFGILKGRFRILKLRLAYHCREDIDNIFFTCCILHNMLHSFDGI 1421
            GNCFD + QLS MSKSMA  TFHKFC++FA EMF EH+YLPTGTY DEV+  + +LG+T A GSTDVTH+GW MCPFTLGRSFTGKEGFPT+A++VTVDH GR + VT  FTGATNDKTI+RYD+ V  IR    Y +REYKLR+A+GT+  R+GC+LIVDNGYHE   L A   YP   +D AFS+ LESVRKDV CF        RILKLR+ YH RE +DNIFFTCCILHNMLH+FDG+
Sbjct:   47 GNCFDDVEQLSKMSKSMAQPTFHKFCRHFAAEMFDEHIYLPTGTYLDEVMGIFHQLGWTGACGSTDVTHIGWNMCPFTLGRSFTGKEGFPTIAYDVTVDHDGRDLAVTNGFTGATNDKTIIRYDSGVNKIRTASQYTEREYKLRKANGTKRMRRGCFLIVDNGYHEWVTLIAPSKYPQRNEDTAFSRDLESVRKDVGCF--------RILKLRMPYHKREYVDNIFFTCCILHNMLHTFDGL 280          
BLAST of mRNA_P-littoralis_Contig159.107.1 vs. uniprot
Match: A0A6H5JAU4_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JAU4_9PHAE)

HSP 1 Score: 319 bits (818), Expect = 7.890e-101
Identity = 148/241 (61.41%), Postives = 187/241 (77.59%), Query Frame = 3
Query:  705 GNCF-DINQLSLMSKSMAAATFHKFCKNFAKEMFGEHMYLPTGTYQDEVVDCYRKLGFTAAIGSTDVTHVGWGMCPFTLGRSFTGKEGFPTLAFEVTVDHAGRAIGVTQEFTGATNDKTIVRYDAAVQTIRNNKVYKDREYKLRRADGTEFTRKGCYLIVDNGYHEVSVL--GAWYPGDVDDAAFSKMLESVRKDVECFFGILKGRFRILKLRLAYHCREDIDNIFFTCCILHNMLHSFDG 1418
            GNCF DI  +S +S   AAATFH+F + FA+EM+ EH++LPTG YQ +V+  Y +LGF+ A GSTDVTH+ WGMCP+   RS+TGKEG+PT+A++VTVDH  R + VT  FTG+TNDK+I+RYD AV  IR + +Y ++E+ +  ADGT +  KGCYL+VDNGYH+   L   + YP D +D AFSK LESVRKDVECFFGI+KGRFRILKL + YH +EDIDN+FFTCCILHNMLHS+D 
Sbjct:  169 GNCFADIYHMSFISMQTAAATFHRFTRYFAREMYAEHIFLPTGDYQKKVMTQYDRLGFSGATGSTDVTHIPWGMCPYNQARSYTGKEGYPTVAYQVTVDHTKRVLAVTPGFTGSTNDKSIIRYDTAVTKIREDPIYSEKEFTVYEADGTPYQLKGCYLLVDNGYHKWVTLIPPSKYPIDQNDLAFSKRLESVRKDVECFFGIVKGRFRILKLSIPYHKQEDIDNVFFTCCILHNMLHSYDN 409          
BLAST of mRNA_P-littoralis_Contig159.107.1 vs. uniprot
Match: A0A6H5K872_9PHAE (DDE Tnp4 domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K872_9PHAE)

HSP 1 Score: 303 bits (776), Expect = 2.180e-95
Identity = 149/240 (62.08%), Postives = 173/240 (72.08%), Query Frame = 3
Query:  705 GNCFD-INQLSLMSKSMAAATFHKFCKNFAKEMFGEHMYLPTGTYQDEVVDCYRKLGFTAAIGSTDVTHVGWGMCPFTLGRSFTGKEGFPTLAFEVTVDHAGRAIGVTQEFTGATNDKTIVRYDAAVQTIRNNKVYKDREYKLRRADGTEFTRKGCYLIVDNGYHEVSVLGAWYPGDVDDAAFSKMLESVRKDVECFFGILKGRFRILKLRLAYHCREDIDNIFFTCCILHNMLHSFDGI 1421
            GNCFD + QLS MS SMA ATFHKFC++FA EMF EH++ PT TY DE +  + +LG T A  STDVTH+   MCPFTLGRSFTGKEGFPT+A+EVTVDHA RA+ VT  FTGA NDKT++ YD+ V  IR    Y +R+YKLR+A+GTE TR+GC+ IVDNGYHE                          DVECFFGILKGRFRILKLR+ YH RE IDNIFFTCCI HNMLH+FDG+
Sbjct:  108 GNCFDDVEQLSKMSISMAQATFHKFCRHFAAEMFDEHIFSPTETYLDEFMGIFHQLGCTGACRSTDVTHIDCNMCPFTLGRSFTGKEGFPTIAYEVTVDHASRALAVTNGFTGAMNDKTVIWYDSGVNDIRTESQYTERQYKLRKANGTERTRRGCFSIVDNGYHE--------------------------DVECFFGILKGRFRILKLRMPYHKREYIDNIFFTCCIRHNMLHTFDGL 321          
BLAST of mRNA_P-littoralis_Contig159.107.1 vs. uniprot
Match: A0A6H5KEB6_9PHAE (DDE Tnp4 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KEB6_9PHAE)

HSP 1 Score: 308 bits (789), Expect = 1.110e-94
Identity = 153/241 (63.49%), Postives = 177/241 (73.44%), Query Frame = 3
Query:  768 HKFCKNFAKEMFGEHMYLPTGTYQDEVVDCYRKLGFTAAIGSTDVTHVGWGMCPFTLGRSFTGKEGFPTLAFEVTVDHAGRAIGVTQEFTGATNDKTIVRYDAAVQTIRNNKVYKDREYKLRRADGTEFTRKGCYLIVDNGY---------HEVSVLGA----------W--------YPGDVDDAAFSKMLESVRKDVECFFGILKGRFRILKLRLAYHCREDIDNIFFTCCILHNMLHS 1409
            HKFC++FA EMF EH+YL TGTY DEV+  + +LG T A GST+VTH+GW MCPFTLGRSFTGKEGFPT+A EVTVDHAGRA+ VT  FTGATNDKTI+RYD+ V  IR    Y +REYKLR+A+GTE TR+GC+LIVDNG          H  +++            W        YP   +D AFS+ LESVRKDVECFFGILKGRFRILKLR+ YH RE IDNIFFTCCILHNMLH+
Sbjct:  246 HKFCRHFAAEMFDEHIYLLTGTYLDEVMGIFHQLGCTGACGSTNVTHIGWNMCPFTLGRSFTGKEGFPTIACEVTVDHAGRALAVTNGFTGATNDKTIIRYDSGVNKIRTESQYTEREYKLRKANGTERTRRGCFLIVDNGMSVPKDLCVVHHKNIVAKLPSSERVLIWWVTLIAPSKYPQSNEDTAFSRHLESVRKDVECFFGILKGRFRILKLRMPYHKREYIDNIFFTCCILHNMLHT 486          
BLAST of mRNA_P-littoralis_Contig159.107.1 vs. uniprot
Match: A0A6H5KY50_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KY50_9PHAE)

HSP 1 Score: 298 bits (763), Expect = 1.380e-93
Identity = 143/241 (59.34%), Postives = 179/241 (74.27%), Query Frame = 3
Query:  705 GNCF-DINQLSLMSKSMAAATFHKFCKNFAKEMFGEHMYLPTGTYQDEVVDCYRKLGFTAAIGSTDVTHVGWGMCPFTLGRSFTGKEGFPTLAFEVTVDHAGRAIGVTQEFTGATNDKTIVRYDAAVQTIRNNKVYKDREYKLRRADGTEFTRKGCYLIVDNGYHEVSVL--GAWYPGDVDDAAFSKMLESVRKDVECFFGILKGRFRILKLRLAYHCREDIDNIFFTCCILHNMLHSFDG 1418
            GN F DI  +S +S    A+TFH+FCK FA E++ E++YLPTG    +V++ Y ++GF  A+GSTDVTH+ WGMCP+   R +TGKEG PT+AF+VTVDH+GR + VT+ FTGATNDKTI+RYD AV  IR + VY +++YKL   DG +F  KGCYL+VDNGYH+   L   +  P D  D  FSK LES RKDVEC+FGILKGRFRI KL + +H +E IDN+FFTCCILHNMLHSFD 
Sbjct:   94 GNVFADIYHMSFISFQTVASTFHRFCKYFAAELYDEYVYLPTGEDLRKVMEQYDRIGFPGAVGSTDVTHIYWGMCPYNQARIYTGKEGKPTVAFQVTVDHSGRVLAVTRGFTGATNDKTIIRYDKAVTRIRTDPVYTEQKYKLYAQDGQQFEEKGCYLLVDNGYHKWRTLIPPSKCPIDRGDLIFSKRLESARKDVECYFGILKGRFRINKLAIGFHKQEYIDNVFFTCCILHNMLHSFDN 334          
BLAST of mRNA_P-littoralis_Contig159.107.1 vs. uniprot
Match: A0A6H5JPH7_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JPH7_9PHAE)

HSP 1 Score: 298 bits (763), Expect = 2.030e-92
Identity = 143/241 (59.34%), Postives = 179/241 (74.27%), Query Frame = 3
Query:  705 GNCF-DINQLSLMSKSMAAATFHKFCKNFAKEMFGEHMYLPTGTYQDEVVDCYRKLGFTAAIGSTDVTHVGWGMCPFTLGRSFTGKEGFPTLAFEVTVDHAGRAIGVTQEFTGATNDKTIVRYDAAVQTIRNNKVYKDREYKLRRADGTEFTRKGCYLIVDNGYHEVSVL--GAWYPGDVDDAAFSKMLESVRKDVECFFGILKGRFRILKLRLAYHCREDIDNIFFTCCILHNMLHSFDG 1418
            GN F DI  +S +S    A+TFH+FCK FA E++ E++YLPTG    +V++ Y ++GF  A+GSTDVTH+ WGMCP+   R +TGKEG PT+AF+VTVDH+GR + VT+ FTGATNDKTI+RYD AV  IR + VY +++YKL   DG +F  KGCYL+VDNGYH+   L   +  P D  D  FSK LES RKDVEC+FGILKGRFRI KL + +H +E IDN+FFTCCILHNMLHSFD 
Sbjct:  185 GNVFADIYHMSFISFQTVASTFHRFCKYFAAELYDEYVYLPTGEDLRKVMEQYDRIGFPGAVGSTDVTHIYWGMCPYNQARIYTGKEGKPTVAFQVTVDHSGRVLAVTRGFTGATNDKTIIRYDKAVTRIRTDPVYTEQKYKLYAQDGQQFEEKGCYLLVDNGYHKWRTLIPPSKCPIDRGDLIFSKRLESARKDVECYFGILKGRFRINKLAIGFHKQEYIDNVFFTCCILHNMLHSFDN 425          
BLAST of mRNA_P-littoralis_Contig159.107.1 vs. uniprot
Match: A0A6H5JHI0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JHI0_9PHAE)

HSP 1 Score: 290 bits (742), Expect = 1.190e-90
Identity = 141/243 (58.02%), Postives = 176/243 (72.43%), Query Frame = 3
Query:  705 GNCF-DINQLSLMSKSMAAATFHKFCKNFAKEMFGEHMYLPT--GTYQDEVVDCYRKLGFTAAIGSTDVTHVGWGMCPFTLGRSFTGKEGFPTLAFEVTVDHAGRAIGVTQEFTGATNDKTIVRYDAAVQTIRNNKVYKDREYKLRRADGTEFTRKGCYLIVDNGYHEVSVL--GAWYPGDVDDAAFSKMLESVRKDVECFFGILKGRFRILKLRLAYHCREDIDNIFFTCCILHNMLHSFDG 1418
            GNCF  I Q+S MS       FHKFCK+FA+EM+ EH+YLP+      D V+  Y +LGF+ A+GS DVTH+GW  CP+ L RS+TGKEG PT+ ++VTV+HAGRAI VT+ FT +TNDKT V +DA V+ IR +  Y ++ + +   DGT  T KGCYL+VDNGYH+  +L     YP   +D  FSK LESVRKDVECFFGILKG FRI K+ +AYH +E IDN+FFTCCILHNMLH+FDG
Sbjct:  109 GNCFASIYQVSWMSAKTVQTMFHKFCKHFAREMYDEHIYLPSEQNGELDHVMKQYDRLGFSGAMGSMDVTHIGWSKCPYNLARSYTGKEGVPTVGYQVTVNHAGRAIAVTEGFTDSTNDKTTVCWDAVVEKIRTDNQYTEKTFDVYNEDGTTTTLKGCYLLVDNGYHKWKILMEPTKYPLSENDILFSKRLESVRKDVECFFGILKGCFRIQKVAMAYHEQERIDNVFFTCCILHNMLHTFDG 351          
BLAST of mRNA_P-littoralis_Contig159.107.1 vs. uniprot
Match: A0A6H5KNX4_9PHAE (DDE Tnp4 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KNX4_9PHAE)

HSP 1 Score: 277 bits (708), Expect = 6.000e-85
Identity = 143/271 (52.77%), Postives = 177/271 (65.31%), Query Frame = 3
Query:  705 GNCF-DINQLSLMSKSMAAATFHKFCKNFAKEMFGEHMYLPT--GTYQDEVVDCYRKLGFTAAIGSTDVTHVGWGMCPFTLGRSFTGKEGFPTLAFEVTVDHAGRAIGVTQEFTGATNDKTIVRYDAAVQTIRNNKVYK----------------------------DREYKLRRADGTEFTRKGCYLIVDNGYHEVSVL--GAWYPGDVDDAAFSKMLESVRKDVECFFGILKGRFRILKLRLAYHCREDIDNIFFTCCILHNMLHSFDG 1418
            GNCF  I Q+S MS       FHKFC++FA+EM+ E ++LPT      D V+  Y +LGFT A+GS DVTH+ W  CP+   RS+TGKEGFPT+A++VTVDHAGRAI VT+ FTG+TNDKTIV +D AV+ I  +K Y                             ++ + +   DGT  T KGCYL+VDNGYH+  +L   + YP   +D  FSK LESVRKDVECFFGILKGRFRILKL + Y  +E IDN+FFTC ILHNMLH+FDG
Sbjct:   96 GNCFASIYQMSWMSAKTVQGMFHKFCRHFAREMYDEQIHLPTEESGKLDHVMKQYDRLGFTGAVGSMDVTHIAWSRCPYNQARSYTGKEGFPTIAYQVTVDHAGRAIAVTEGFTGSTNDKTIVCWDTAVEKIWTDKHYTXXXXXXXXXXXXXXXXXXXXXXXXXXXXEKTFDVYNEDGTTTTLKGCYLLVDNGYHKWQILIEPSKYPLSENDLLFSKRLESVRKDVECFFGILKGRFRILKLAMEYQSQERIDNVFFTCYILHNMLHTFDG 366          
BLAST of mRNA_P-littoralis_Contig159.107.1 vs. uniprot
Match: A0A6H5JBE2_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JBE2_9PHAE)

HSP 1 Score: 275 bits (704), Expect = 3.850e-84
Identity = 137/243 (56.38%), Postives = 171/243 (70.37%), Query Frame = 3
Query:  705 GNCF-DINQLSLMSKSMAAATFHKFCKNFAKEMFGEHMYLPT--GTYQDEVVDCYRKLGFTAAIGSTDVTHVGWGMCPFTLGRSFTGKEGFPTLAFEVTVDHAGRAIGVTQEFTGATNDKTIVRYDAAVQTIRNNKVYKDREYKLRRADGTEFTRKGCYLIVDNGYHEVSVL--GAWYPGDVDDAAFSKMLESVRKDVECFFGILKGRFRILKLRLAYHCREDIDNIFFTCCILHNMLHSFDG 1418
            GN F  I  LS MS       FH+FC++FA EM+ EH++LP+      D V+  Y KLGF  A+GSTDVTH+GW  CP+  GRS+TGKEG PT+ ++VTV+HAGR + VT+ FTG+TNDKTI+  D AV  IR +K Y ++ + + + DGT  T KGCYLIVDNGYH+  +L   + YP    D  FSK LESVRKDVECFFGILK RFRILKL + Y  +E +D +FFTCCILHNMLH+ DG
Sbjct:  138 GNVFGSIYNLSWMSTPTVQKVFHQFCEHFATEMYDEHIFLPSEENGELDRVMGQYEKLGFPGAMGSTDVTHIGWSRCPYNQGRSYTGKEGKPTVGYQVTVNHAGRVLAVTEGFTGSTNDKTIICCDEAVDRIRTDKQYAEKPFTVHKKDGTTETLKGCYLIVDNGYHKWRMLIEPSKYPLSEADLLFSKRLESVRKDVECFFGILKMRFRILKLAMTYQKQERLDYVFFTCCILHNMLHTHDG 380          
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig159.107.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KSI7_9PHAE6.410e-10868.22DDE Tnp4 domain-containing protein (Fragment) n=1 ... [more]
A0A6H5K796_9PHAE1.410e-10666.94Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JAU4_9PHAE7.890e-10161.41Uncharacterized protein n=2 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K872_9PHAE2.180e-9562.08DDE Tnp4 domain-containing protein (Fragment) n=1 ... [more]
A0A6H5KEB6_9PHAE1.110e-9463.49DDE Tnp4 domain-containing protein n=1 Tax=Ectocar... [more]
A0A6H5KY50_9PHAE1.380e-9359.34Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JPH7_9PHAE2.030e-9259.34Uncharacterized protein n=2 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JHI0_9PHAE1.190e-9058.02Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KNX4_9PHAE6.000e-8552.77DDE Tnp4 domain-containing protein n=1 Tax=Ectocar... [more]
A0A6H5JBE2_9PHAE3.850e-8456.38Uncharacterized protein n=2 Tax=Ectocarpus sp. CCA... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig159contigP-littoralis_Contig159:476915..481143 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog2880.D7FSK2
PFAMsPlant_tran
Model size1421
Max annot lvl2759|Eukaryota
Hectar predicted targeting categoryother localisation
Exons3
Evalue1.02e-85
EggNOG OGs2E2RF@1|root,2S9YA@2759|Eukaryota
DescriptionPlant transposon protein
Cds size684
COG categoryS
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789762.578401-CDS-P-littoralis_Contig159:476914..4771151680789762.578401-CDS-P-littoralis_Contig159:476914..477115Pylaiella littoralis U1_48CDSP-littoralis_Contig159 476915..477115 -
1680789762.5892591-CDS-P-littoralis_Contig159:477690..4781731680789762.5892591-CDS-P-littoralis_Contig159:477690..478173Pylaiella littoralis U1_48CDSP-littoralis_Contig159 477691..478173 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789762.602763-UTR-P-littoralis_Contig159:478173..4782311680789762.602763-UTR-P-littoralis_Contig159:478173..478231Pylaiella littoralis U1_48UTRP-littoralis_Contig159 478174..478231 -
1680789762.6108384-UTR-P-littoralis_Contig159:480464..4811431680789762.6108384-UTR-P-littoralis_Contig159:480464..481143Pylaiella littoralis U1_48UTRP-littoralis_Contig159 480465..481143 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig159.107.1prot_P-littoralis_Contig159.107.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig159 476915..478173 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig159.107.1

>prot_P-littoralis_Contig159.107.1 ID=prot_P-littoralis_Contig159.107.1|Name=mRNA_P-littoralis_Contig159.107.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=228bp
MSKSMAAATFHKFCKNFAKEMFGEHMYLPTGTYQDEVVDCYRKLGFTAAI
GSTDVTHVGWGMCPFTLGRSFTGKEGFPTLAFEVTVDHAGRAIGVTQEFT
GATNDKTIVRYDAAVQTIRNNKVYKDREYKLRRADGTEFTRKGCYLIVDN
GYHEVSVLGAWYPGDVDDAAFSKMLESVRKDVECFFGILKGRFRILKLRL
AYHCREDIDNIFFTCCILHNMLHSFDGI
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mRNA from alignment at P-littoralis_Contig159:476915..481143-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig159.107.1 ID=mRNA_P-littoralis_Contig159.107.1|Name=mRNA_P-littoralis_Contig159.107.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=4229bp|location=Sequence derived from alignment at P-littoralis_Contig159:476915..481143- (Pylaiella littoralis U1_48)
AACGTTTTTTCGTCTGCCTGGTTTTCGGTGTGTGTGGGGGGGGTCAAGGG TCTGAGAGGCGGCGAGATCAACAAATTCAAATCTACAGCAGAGCTGGAAC GCGGGAACAGCACAACAGCAGTACAGCTGTAGAGCATGTGGCTGCCCTCC TTCCTCGCGTGTGGGGCTACCCTCAAACTTCTTTCGCAGCCGATAAGCAC CGCACAATTGCCAGGACACCCTCCGCACTTCGCTATGCAGGCGCCGCCGA AGCCGTCCGAATGTGACGACCTTCTGGCCACGAAAGTTCTGTCGGTTGCC ATTGCCGCTCTCCACCACAGCGAGCAGCACGATCGACAAACACGCGTGCG CCCGATGGCACAGTGGGCTGTTGTACTCGAGGAGTTGGGTGCTGCTACGT TGTGGCCAGAGGAGGATGGTGACGACGACGTGCCGCGTGCGAAGCGGACG AGATACATCAAGGAGCGAAAGAACTGGAAGCAATCTGCCTTGTGGAAGCA AGTTCAGGAGGAAGATCTTGCCGTGCCCACGTCCGATGCGGCGAAGGTAT TCCGAGAGCGCTTTCGCGTGCCTCACGCCTTCTTCCTGAGGTTGGTGAAG CTGTCGAGGGAGAAGAAGTGGTTCGACTAACGGAGGAGCGGATGTAGCAG GCCGTGAGGGTATCCCAGTAGAGCTCAAGGTGCGCTTGAAAATGACACTT CGTATAGTCCAGGCAGAAGAATTTTTCCAAAAGTTCGACATTTATATATT GAGTTGTTTTGAGGTGGTCACTTACTTTTACAAGACATAAAATATATCGA CGGAAAGCTCTCTTTCAGACGGATCGAACTATCGTGGCAGATTTTTTTTT TTCATCGTTGCGTCGGAGTAATTCGTTTTTTCGATAAAAATTGGTCAAGA TTTTGTAGGTCGACACAGGTGTCATCTTTTTTTTTTGACACCGGTTTTGA ACGTATCTCGACCAGGGGCAGATTCCTGTCGAAGCAGATTCTTTTTTTAT CGATTTTTAAGCGAGATATGGGCGAAAAAACCCACTTTTCCCCTGCTCCA GCTGTGGAGACTTTAGCGCAAAACTGGCACGATGGATGTCGAAAAACTCC TCGGATTCGGATGAATTGGACCTGTACCCAGGACCATTTTTTTTTTTTTT TTTGAAAAAAACTCTGTGGGCCGAGAAAAGCCGTTGTGAAAAATGGCGCC CTCAGTTTTTTTTTTTGAATAATTAACACTTGAAGTTAGAGTACCAACAG GGCACAACCACCAAGTACACACCAGGTGGCACACACACGTTGGTGTACTG GTGTACACACCCACACACCCACACACGAGGACCATGCCCGGCGGGTGCCC ACCAAAGAAGAAGTACGGTTACATGCAATACAGAGACCTAAAGAAGTGGA CGAGCCACCGCTCATCTACTGATCGGGTTGATGCCGTGTTGATGGCAAAG AGCACGGCCGCATCACCCGAGGAGCGCAAGAAAAACGAGTAGACGGCACT TGCAGCCTCGCGGGAAGCCAGGATAGACTCTATGAAACACTTGAACAAAT CATTAAAGCACTTGAACGACTCGCGCTTGGACACGAGTTTGGAGACGGTG GCGTCGGCTCCTACGCAAAGTTGATGTTGTGTATTTTACTTTTATATATA TACCAGGTATATTACCTACTGCTGTGTGTGTGTGTGTGTTTTCTTCACAT TAAAAATCGTTCCAATCTCTGCTAGTATATGATATGTATTTAAATATATA TGTAGAACTACAGAAGTACCTTGCTTCGCTATTACGAAGTGTCTTCTCGA CAAGTCGGTCATGGATTGGGTGGCGGATTGGGGTTAATTCAGTTTCGATT AGGGGCATTTTTTTTTTGCGGTTTCAGGATAAAAAAGAAAGGAAAAAAAA GGTTAAAAAAAACAAAATCCCAAAAAAAGTCGAAAATGGCCATTGTTCAT GGAATTTTTTTTTAAGACTGGTTTTGGGTTCCTCTCGGCCGCGCGATTCT GGAAAAGTTTGTTTCATCTGTCAACTCCTTAAAATGACGGAGAAAAAACC GGTACCCCCTTTGGAAAAATTCTTCTGCCTGGACCATACGAAGCATAACA TACTGGTGAAAGAAGATAGATGCTATGTGTACAAGTACAAAATACAGCAG CATTCCACTGCTGTGCGTCACACAACTGCTTTCCACAGACCGCCGTCCCC CTCATGACTGCAGCACAACTGCTGCACCTGACGAAAGTCTGCATGCCTTT CGGGGCCGGTATATCTGTGAAGCACTTGCAGCTGTAGGGTATGCGAGACC AATCAAGTGCGCAACGATTTTTGTGGGTCGACACGACGAGGACTAGCGAA TGAACCTATTCTGGATAACAAAGTGCCGCAGACGGACATCACCACAGCAG TGTGTGTTGCTGATGCTGCCGAAGATACCGCTGCAGGTGTTTGGGTACTC TTCTGTGCCCCACCCCTGGGTCGGTGGTTATTACGAGGTACTTGTATTCC GAGCCTTTCTCGATTGGTCGTTTCGGGTCGAGTGGATGCGAAAATACGGG AATGCAACCAAACATGGCTGCTGTACTGCTGTAGACTGGCGTGCAGAATA GATGGGATGGCAACACAACACAACTGTATTTACCACGCTTTCACGTAAAA TAAAACATGCCGTTGCTGCGCCACCACGTGACGCTATTCAGACACAACAG CTGTCACGATGTGCGTATGTGGATATCAAAACATCATCCGTAATACGATA TCATGTATCTGCCTGATTCGTATGCACGGACTACTTCAAATGGTAGTTGT CCAGCAGAGCGAATCGTGCAACAGCAACTAGTTGACTGATGGACACTCTC GCCCCCCCCTTTTCTACCCGCCGCCGCGCGCGCTCCCCCTCCCCCCTTAC ATTTTTCGACAGATCTTGACGGCCCTCCAGATACTCGGGTAACTGCTTCG ACATCAACCAGCTGTCGTTAATGAGCAAATCGATGGCGGCAGCAACATTC CACAAGTTCTGCAAGAACTTCGCGAAGGAGATGTTCGGGGAGCATATGTA CCTTCCAACAGGAACGTACCAAGACGAAGTGGTGGACTGCTACCGTAAAC TGGGTTTTACTGCAGCAATCGGTTCTACCGACGTCACTCACGTCGGCTGG GGCATGTGTCCGTTCACCCTTGGCCGTTCTTTCACGGGCAAGGAGGGGTT TCCAACCCTGGCGTTCGAGGTTACCGTCGACCACGCGGGGCGCGCCATTG GCGTCACCCAAGAGTTCACCGGTGCGACCAACGACAAGACGATCGTCCGC TACGACGCAGCCGTACAGACCATCAGGAACAACAAAGTGTACAAGGATCG AGAGTACAAGCTCAGGAGGGCGGATGGCACGGAGTTCACCCGGAAAGGAT GCTATTTGATCGTCGACAACGGCTATCACGAGGTGAGTGTATTGGGGGCG TGGGTAGTATAGAATATCCGAACGTAGGGCGTGCTCCGTAACGCTTCGGG TTGATGTGAAGCCCGAAAAAAAACACGCCGGTACACCGAAAGCAGACCAA TGCCATATTTGTCGGTACTGAATGAGGATCCTTATGGCATGTCGGCCCCG TGCATCGGGCGTCGACCTTACTTAGGCAGCGGCACACCAAGGTAAAAAAC ATTTTGCCGCTTCGCGTTCATTCTATTTGTATTTGTTTTTGTGCTGGATC CGTTTGGACGGTTGCGTTCACGTTCTTACATTTCGAGCATACATTACCCC ATTTATAACACCAAAGGTTTAAAAAAACAAATCTGCTCAGGGGTGGTCAG ATGGCAAATATTGTACTTCGAAGTACAAAGTTGTAGGCATCTGTGTTCCA CATGTCAACACGGTTCCTCGTTCCCCCGAAGAGTTTGATCGTGAAAATAT GTGCGTCGGGGCCTGAGGTTTCCAGAGCCTCTCCGTAGCTCACCAGTCGT CCCTTTCGACCCCCCCTGCTGCTGTTGTGCCGTCGTGTGCCAAATCAACA CTGGGTCACCCTCATGGCCCCATCGAAGTACCCGGGTGACGTGGATGACG CGGCCTTCTCCAAGATGCTTGAGAGTGTGCGCAAGGATGTGGAGTGTTTC TTCGGCATTCTGAAAGGGCGCTTCAGAATCCTGAAGCTCCGCCTGGCCTA CCACTGCAGGGAAGACATCGATAACATCTTCTTCACGTGCTGCATTCTCC ACAACATGCTCCACTCCTTCGACGGCATT
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Coding sequence (CDS) from alignment at P-littoralis_Contig159:476915..481143-

>mRNA_P-littoralis_Contig159.107.1 ID=mRNA_P-littoralis_Contig159.107.1|Name=mRNA_P-littoralis_Contig159.107.1|organism=Pylaiella littoralis U1_48|type=CDS|length=684bp|location=Sequence derived from alignment at P-littoralis_Contig159:476915..481143- (Pylaiella littoralis U1_48)
ATGAGCAAATCGATGGCGGCAGCAACATTCCACAAGTTCTGCAAGAACTT
CGCGAAGGAGATGTTCGGGGAGCATATGTACCTTCCAACAGGAACGTACC
AAGACGAAGTGGTGGACTGCTACCGTAAACTGGGTTTTACTGCAGCAATC
GGTTCTACCGACGTCACTCACGTCGGCTGGGGCATGTGTCCGTTCACCCT
TGGCCGTTCTTTCACGGGCAAGGAGGGGTTTCCAACCCTGGCGTTCGAGG
TTACCGTCGACCACGCGGGGCGCGCCATTGGCGTCACCCAAGAGTTCACC
GGTGCGACCAACGACAAGACGATCGTCCGCTACGACGCAGCCGTACAGAC
CATCAGGAACAACAAAGTGTACAAGGATCGAGAGTACAAGCTCAGGAGGG
CGGATGGCACGGAGTTCACCCGGAAAGGATGCTATTTGATCGTCGACAAC
GGCTATCACGAGGTGAGTGTATTGGGGGCGTGGTACCCGGGTGACGTGGA
TGACGCGGCCTTCTCCAAGATGCTTGAGAGTGTGCGCAAGGATGTGGAGT
GTTTCTTCGGCATTCTGAAAGGGCGCTTCAGAATCCTGAAGCTCCGCCTG
GCCTACCACTGCAGGGAAGACATCGATAACATCTTCTTCACGTGCTGCAT
TCTCCACAACATGCTCCACTCCTTCGACGGCATT
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