mRNA_P-littoralis_Contig159.107.1 (mRNA) Pylaiella littoralis U1_48
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Overview
Homology
BLAST of mRNA_P-littoralis_Contig159.107.1 vs. uniprot
Match: A0A6H5KSI7_9PHAE (DDE Tnp4 domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KSI7_9PHAE) HSP 1 Score: 333 bits (855), Expect = 6.410e-108 Identity = 161/236 (68.22%), Postives = 187/236 (79.24%), Query Frame = 3
Query: 705 GNCFD-INQLSLMSKSMAAATFHKFCKNFAKEMFGEHMYLPTGTYQDEVVDCYRKLGFTAAIGSTDVTHVGWGMCPFTLGRSFTGKEGFPTLAFEVTVDHAGRAIGVTQEFTGATNDKTIVRYDAAVQTIRNNKVYKDREYKLRRADGTEFTRKGCYLIVDNGYHEVSVLGAWYPGDVDDAAFSKMLESVRKDVECFFGILKGRFRILKLRLAYHCREDIDNIFFTCCILHNMLHS 1409
GNCFD + QLS MS+S+A A FHKFC++ A EMF EH+YLPTGTY DEV+ + +LG T A GSTDVTH+G MCPFTLGRSFTGKEGFPT+A+EVTVDHAGRA+ VT F G TNDKT +RYD+ V IR Y +REYKLR+ +GTE TR+GC+LIVDNGY+E + +D AFS+ LESVRKDVECFFGILKGRFRILKLR+ YH RE IDNIFFTCCILHNMLH+
Sbjct: 143 GNCFDDVEQLSKMSESIAQALFHKFCRHSAAEMFDEHIYLPTGTYLDEVMGIFHQLGCTGACGSTDVTHIGRNMCPFTLGRSFTGKEGFPTIAYEVTVDHAGRALAVTNGFAGGTNDKTTIRYDSGVNKIRTESQYTEREYKLRKVNGTERTRRGCFLIVDNGYYESN----------EDTAFSRHLESVRKDVECFFGILKGRFRILKLRMPYHKREYIDNIFFTCCILHNMLHT 368
BLAST of mRNA_P-littoralis_Contig159.107.1 vs. uniprot
Match: A0A6H5K796_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K796_9PHAE) HSP 1 Score: 330 bits (846), Expect = 1.410e-106 Identity = 162/242 (66.94%), Postives = 189/242 (78.10%), Query Frame = 3
Query: 705 GNCFD-INQLSLMSKSMAAATFHKFCKNFAKEMFGEHMYLPTGTYQDEVVDCYRKLGFTAAIGSTDVTHVGWGMCPFTLGRSFTGKEGFPTLAFEVTVDHAGRAIGVTQEFTGATNDKTIVRYDAAVQTIRNNKVYKDREYKLRRADGTEFTRKGCYLIVDNGYHEVSVLGA--WYPGDVDDAAFSKMLESVRKDVECFFGILKGRFRILKLRLAYHCREDIDNIFFTCCILHNMLHSFDGI 1421
GNCFD + QLS MSKSMA TFHKFC++FA EMF EH+YLPTGTY DEV+ + +LG+T A GSTDVTH+GW MCPFTLGRSFTGKEGFPT+A++VTVDH GR + VT FTGATNDKTI+RYD+ V IR Y +REYKLR+A+GT+ R+GC+LIVDNGYHE L A YP +D AFS+ LESVRKDV CF RILKLR+ YH RE +DNIFFTCCILHNMLH+FDG+
Sbjct: 47 GNCFDDVEQLSKMSKSMAQPTFHKFCRHFAAEMFDEHIYLPTGTYLDEVMGIFHQLGWTGACGSTDVTHIGWNMCPFTLGRSFTGKEGFPTIAYDVTVDHDGRDLAVTNGFTGATNDKTIIRYDSGVNKIRTASQYTEREYKLRKANGTKRMRRGCFLIVDNGYHEWVTLIAPSKYPQRNEDTAFSRDLESVRKDVGCF--------RILKLRMPYHKREYVDNIFFTCCILHNMLHTFDGL 280
BLAST of mRNA_P-littoralis_Contig159.107.1 vs. uniprot
Match: A0A6H5JAU4_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JAU4_9PHAE) HSP 1 Score: 319 bits (818), Expect = 7.890e-101 Identity = 148/241 (61.41%), Postives = 187/241 (77.59%), Query Frame = 3
Query: 705 GNCF-DINQLSLMSKSMAAATFHKFCKNFAKEMFGEHMYLPTGTYQDEVVDCYRKLGFTAAIGSTDVTHVGWGMCPFTLGRSFTGKEGFPTLAFEVTVDHAGRAIGVTQEFTGATNDKTIVRYDAAVQTIRNNKVYKDREYKLRRADGTEFTRKGCYLIVDNGYHEVSVL--GAWYPGDVDDAAFSKMLESVRKDVECFFGILKGRFRILKLRLAYHCREDIDNIFFTCCILHNMLHSFDG 1418
GNCF DI +S +S AAATFH+F + FA+EM+ EH++LPTG YQ +V+ Y +LGF+ A GSTDVTH+ WGMCP+ RS+TGKEG+PT+A++VTVDH R + VT FTG+TNDK+I+RYD AV IR + +Y ++E+ + ADGT + KGCYL+VDNGYH+ L + YP D +D AFSK LESVRKDVECFFGI+KGRFRILKL + YH +EDIDN+FFTCCILHNMLHS+D
Sbjct: 169 GNCFADIYHMSFISMQTAAATFHRFTRYFAREMYAEHIFLPTGDYQKKVMTQYDRLGFSGATGSTDVTHIPWGMCPYNQARSYTGKEGYPTVAYQVTVDHTKRVLAVTPGFTGSTNDKSIIRYDTAVTKIREDPIYSEKEFTVYEADGTPYQLKGCYLLVDNGYHKWVTLIPPSKYPIDQNDLAFSKRLESVRKDVECFFGIVKGRFRILKLSIPYHKQEDIDNVFFTCCILHNMLHSYDN 409
BLAST of mRNA_P-littoralis_Contig159.107.1 vs. uniprot
Match: A0A6H5K872_9PHAE (DDE Tnp4 domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K872_9PHAE) HSP 1 Score: 303 bits (776), Expect = 2.180e-95 Identity = 149/240 (62.08%), Postives = 173/240 (72.08%), Query Frame = 3
Query: 705 GNCFD-INQLSLMSKSMAAATFHKFCKNFAKEMFGEHMYLPTGTYQDEVVDCYRKLGFTAAIGSTDVTHVGWGMCPFTLGRSFTGKEGFPTLAFEVTVDHAGRAIGVTQEFTGATNDKTIVRYDAAVQTIRNNKVYKDREYKLRRADGTEFTRKGCYLIVDNGYHEVSVLGAWYPGDVDDAAFSKMLESVRKDVECFFGILKGRFRILKLRLAYHCREDIDNIFFTCCILHNMLHSFDGI 1421
GNCFD + QLS MS SMA ATFHKFC++FA EMF EH++ PT TY DE + + +LG T A STDVTH+ MCPFTLGRSFTGKEGFPT+A+EVTVDHA RA+ VT FTGA NDKT++ YD+ V IR Y +R+YKLR+A+GTE TR+GC+ IVDNGYHE DVECFFGILKGRFRILKLR+ YH RE IDNIFFTCCI HNMLH+FDG+
Sbjct: 108 GNCFDDVEQLSKMSISMAQATFHKFCRHFAAEMFDEHIFSPTETYLDEFMGIFHQLGCTGACRSTDVTHIDCNMCPFTLGRSFTGKEGFPTIAYEVTVDHASRALAVTNGFTGAMNDKTVIWYDSGVNDIRTESQYTERQYKLRKANGTERTRRGCFSIVDNGYHE--------------------------DVECFFGILKGRFRILKLRMPYHKREYIDNIFFTCCIRHNMLHTFDGL 321
BLAST of mRNA_P-littoralis_Contig159.107.1 vs. uniprot
Match: A0A6H5KEB6_9PHAE (DDE Tnp4 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KEB6_9PHAE) HSP 1 Score: 308 bits (789), Expect = 1.110e-94 Identity = 153/241 (63.49%), Postives = 177/241 (73.44%), Query Frame = 3
Query: 768 HKFCKNFAKEMFGEHMYLPTGTYQDEVVDCYRKLGFTAAIGSTDVTHVGWGMCPFTLGRSFTGKEGFPTLAFEVTVDHAGRAIGVTQEFTGATNDKTIVRYDAAVQTIRNNKVYKDREYKLRRADGTEFTRKGCYLIVDNGY---------HEVSVLGA----------W--------YPGDVDDAAFSKMLESVRKDVECFFGILKGRFRILKLRLAYHCREDIDNIFFTCCILHNMLHS 1409
HKFC++FA EMF EH+YL TGTY DEV+ + +LG T A GST+VTH+GW MCPFTLGRSFTGKEGFPT+A EVTVDHAGRA+ VT FTGATNDKTI+RYD+ V IR Y +REYKLR+A+GTE TR+GC+LIVDNG H +++ W YP +D AFS+ LESVRKDVECFFGILKGRFRILKLR+ YH RE IDNIFFTCCILHNMLH+
Sbjct: 246 HKFCRHFAAEMFDEHIYLLTGTYLDEVMGIFHQLGCTGACGSTNVTHIGWNMCPFTLGRSFTGKEGFPTIACEVTVDHAGRALAVTNGFTGATNDKTIIRYDSGVNKIRTESQYTEREYKLRKANGTERTRRGCFLIVDNGMSVPKDLCVVHHKNIVAKLPSSERVLIWWVTLIAPSKYPQSNEDTAFSRHLESVRKDVECFFGILKGRFRILKLRMPYHKREYIDNIFFTCCILHNMLHT 486
BLAST of mRNA_P-littoralis_Contig159.107.1 vs. uniprot
Match: A0A6H5KY50_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KY50_9PHAE) HSP 1 Score: 298 bits (763), Expect = 1.380e-93 Identity = 143/241 (59.34%), Postives = 179/241 (74.27%), Query Frame = 3
Query: 705 GNCF-DINQLSLMSKSMAAATFHKFCKNFAKEMFGEHMYLPTGTYQDEVVDCYRKLGFTAAIGSTDVTHVGWGMCPFTLGRSFTGKEGFPTLAFEVTVDHAGRAIGVTQEFTGATNDKTIVRYDAAVQTIRNNKVYKDREYKLRRADGTEFTRKGCYLIVDNGYHEVSVL--GAWYPGDVDDAAFSKMLESVRKDVECFFGILKGRFRILKLRLAYHCREDIDNIFFTCCILHNMLHSFDG 1418
GN F DI +S +S A+TFH+FCK FA E++ E++YLPTG +V++ Y ++GF A+GSTDVTH+ WGMCP+ R +TGKEG PT+AF+VTVDH+GR + VT+ FTGATNDKTI+RYD AV IR + VY +++YKL DG +F KGCYL+VDNGYH+ L + P D D FSK LES RKDVEC+FGILKGRFRI KL + +H +E IDN+FFTCCILHNMLHSFD
Sbjct: 94 GNVFADIYHMSFISFQTVASTFHRFCKYFAAELYDEYVYLPTGEDLRKVMEQYDRIGFPGAVGSTDVTHIYWGMCPYNQARIYTGKEGKPTVAFQVTVDHSGRVLAVTRGFTGATNDKTIIRYDKAVTRIRTDPVYTEQKYKLYAQDGQQFEEKGCYLLVDNGYHKWRTLIPPSKCPIDRGDLIFSKRLESARKDVECYFGILKGRFRINKLAIGFHKQEYIDNVFFTCCILHNMLHSFDN 334
BLAST of mRNA_P-littoralis_Contig159.107.1 vs. uniprot
Match: A0A6H5JPH7_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JPH7_9PHAE) HSP 1 Score: 298 bits (763), Expect = 2.030e-92 Identity = 143/241 (59.34%), Postives = 179/241 (74.27%), Query Frame = 3
Query: 705 GNCF-DINQLSLMSKSMAAATFHKFCKNFAKEMFGEHMYLPTGTYQDEVVDCYRKLGFTAAIGSTDVTHVGWGMCPFTLGRSFTGKEGFPTLAFEVTVDHAGRAIGVTQEFTGATNDKTIVRYDAAVQTIRNNKVYKDREYKLRRADGTEFTRKGCYLIVDNGYHEVSVL--GAWYPGDVDDAAFSKMLESVRKDVECFFGILKGRFRILKLRLAYHCREDIDNIFFTCCILHNMLHSFDG 1418
GN F DI +S +S A+TFH+FCK FA E++ E++YLPTG +V++ Y ++GF A+GSTDVTH+ WGMCP+ R +TGKEG PT+AF+VTVDH+GR + VT+ FTGATNDKTI+RYD AV IR + VY +++YKL DG +F KGCYL+VDNGYH+ L + P D D FSK LES RKDVEC+FGILKGRFRI KL + +H +E IDN+FFTCCILHNMLHSFD
Sbjct: 185 GNVFADIYHMSFISFQTVASTFHRFCKYFAAELYDEYVYLPTGEDLRKVMEQYDRIGFPGAVGSTDVTHIYWGMCPYNQARIYTGKEGKPTVAFQVTVDHSGRVLAVTRGFTGATNDKTIIRYDKAVTRIRTDPVYTEQKYKLYAQDGQQFEEKGCYLLVDNGYHKWRTLIPPSKCPIDRGDLIFSKRLESARKDVECYFGILKGRFRINKLAIGFHKQEYIDNVFFTCCILHNMLHSFDN 425
BLAST of mRNA_P-littoralis_Contig159.107.1 vs. uniprot
Match: A0A6H5JHI0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JHI0_9PHAE) HSP 1 Score: 290 bits (742), Expect = 1.190e-90 Identity = 141/243 (58.02%), Postives = 176/243 (72.43%), Query Frame = 3
Query: 705 GNCF-DINQLSLMSKSMAAATFHKFCKNFAKEMFGEHMYLPT--GTYQDEVVDCYRKLGFTAAIGSTDVTHVGWGMCPFTLGRSFTGKEGFPTLAFEVTVDHAGRAIGVTQEFTGATNDKTIVRYDAAVQTIRNNKVYKDREYKLRRADGTEFTRKGCYLIVDNGYHEVSVL--GAWYPGDVDDAAFSKMLESVRKDVECFFGILKGRFRILKLRLAYHCREDIDNIFFTCCILHNMLHSFDG 1418
GNCF I Q+S MS FHKFCK+FA+EM+ EH+YLP+ D V+ Y +LGF+ A+GS DVTH+GW CP+ L RS+TGKEG PT+ ++VTV+HAGRAI VT+ FT +TNDKT V +DA V+ IR + Y ++ + + DGT T KGCYL+VDNGYH+ +L YP +D FSK LESVRKDVECFFGILKG FRI K+ +AYH +E IDN+FFTCCILHNMLH+FDG
Sbjct: 109 GNCFASIYQVSWMSAKTVQTMFHKFCKHFAREMYDEHIYLPSEQNGELDHVMKQYDRLGFSGAMGSMDVTHIGWSKCPYNLARSYTGKEGVPTVGYQVTVNHAGRAIAVTEGFTDSTNDKTTVCWDAVVEKIRTDNQYTEKTFDVYNEDGTTTTLKGCYLLVDNGYHKWKILMEPTKYPLSENDILFSKRLESVRKDVECFFGILKGCFRIQKVAMAYHEQERIDNVFFTCCILHNMLHTFDG 351
BLAST of mRNA_P-littoralis_Contig159.107.1 vs. uniprot
Match: A0A6H5KNX4_9PHAE (DDE Tnp4 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KNX4_9PHAE) HSP 1 Score: 277 bits (708), Expect = 6.000e-85 Identity = 143/271 (52.77%), Postives = 177/271 (65.31%), Query Frame = 3
Query: 705 GNCF-DINQLSLMSKSMAAATFHKFCKNFAKEMFGEHMYLPT--GTYQDEVVDCYRKLGFTAAIGSTDVTHVGWGMCPFTLGRSFTGKEGFPTLAFEVTVDHAGRAIGVTQEFTGATNDKTIVRYDAAVQTIRNNKVYK----------------------------DREYKLRRADGTEFTRKGCYLIVDNGYHEVSVL--GAWYPGDVDDAAFSKMLESVRKDVECFFGILKGRFRILKLRLAYHCREDIDNIFFTCCILHNMLHSFDG 1418
GNCF I Q+S MS FHKFC++FA+EM+ E ++LPT D V+ Y +LGFT A+GS DVTH+ W CP+ RS+TGKEGFPT+A++VTVDHAGRAI VT+ FTG+TNDKTIV +D AV+ I +K Y ++ + + DGT T KGCYL+VDNGYH+ +L + YP +D FSK LESVRKDVECFFGILKGRFRILKL + Y +E IDN+FFTC ILHNMLH+FDG
Sbjct: 96 GNCFASIYQMSWMSAKTVQGMFHKFCRHFAREMYDEQIHLPTEESGKLDHVMKQYDRLGFTGAVGSMDVTHIAWSRCPYNQARSYTGKEGFPTIAYQVTVDHAGRAIAVTEGFTGSTNDKTIVCWDTAVEKIWTDKHYTXXXXXXXXXXXXXXXXXXXXXXXXXXXXEKTFDVYNEDGTTTTLKGCYLLVDNGYHKWQILIEPSKYPLSENDLLFSKRLESVRKDVECFFGILKGRFRILKLAMEYQSQERIDNVFFTCYILHNMLHTFDG 366
BLAST of mRNA_P-littoralis_Contig159.107.1 vs. uniprot
Match: A0A6H5JBE2_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JBE2_9PHAE) HSP 1 Score: 275 bits (704), Expect = 3.850e-84 Identity = 137/243 (56.38%), Postives = 171/243 (70.37%), Query Frame = 3
Query: 705 GNCF-DINQLSLMSKSMAAATFHKFCKNFAKEMFGEHMYLPT--GTYQDEVVDCYRKLGFTAAIGSTDVTHVGWGMCPFTLGRSFTGKEGFPTLAFEVTVDHAGRAIGVTQEFTGATNDKTIVRYDAAVQTIRNNKVYKDREYKLRRADGTEFTRKGCYLIVDNGYHEVSVL--GAWYPGDVDDAAFSKMLESVRKDVECFFGILKGRFRILKLRLAYHCREDIDNIFFTCCILHNMLHSFDG 1418
GN F I LS MS FH+FC++FA EM+ EH++LP+ D V+ Y KLGF A+GSTDVTH+GW CP+ GRS+TGKEG PT+ ++VTV+HAGR + VT+ FTG+TNDKTI+ D AV IR +K Y ++ + + + DGT T KGCYLIVDNGYH+ +L + YP D FSK LESVRKDVECFFGILK RFRILKL + Y +E +D +FFTCCILHNMLH+ DG
Sbjct: 138 GNVFGSIYNLSWMSTPTVQKVFHQFCEHFATEMYDEHIFLPSEENGELDRVMGQYEKLGFPGAMGSTDVTHIGWSRCPYNQGRSYTGKEGKPTVGYQVTVNHAGRVLAVTEGFTGSTNDKTIICCDEAVDRIRTDKQYAEKPFTVHKKDGTTETLKGCYLIVDNGYHKWRMLIEPSKYPLSEADLLFSKRLESVRKDVECFFGILKMRFRILKLAMTYQKQERLDYVFFTCCILHNMLHTHDG 380 The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig159.107.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_P-littoralis_Contig159.107.1 >prot_P-littoralis_Contig159.107.1 ID=prot_P-littoralis_Contig159.107.1|Name=mRNA_P-littoralis_Contig159.107.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=228bp MSKSMAAATFHKFCKNFAKEMFGEHMYLPTGTYQDEVVDCYRKLGFTAAIback to top mRNA from alignment at P-littoralis_Contig159:476915..481143- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_P-littoralis_Contig159.107.1 ID=mRNA_P-littoralis_Contig159.107.1|Name=mRNA_P-littoralis_Contig159.107.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=4229bp|location=Sequence derived from alignment at P-littoralis_Contig159:476915..481143- (Pylaiella littoralis U1_48)back to top Coding sequence (CDS) from alignment at P-littoralis_Contig159:476915..481143- >mRNA_P-littoralis_Contig159.107.1 ID=mRNA_P-littoralis_Contig159.107.1|Name=mRNA_P-littoralis_Contig159.107.1|organism=Pylaiella littoralis U1_48|type=CDS|length=684bp|location=Sequence derived from alignment at P-littoralis_Contig159:476915..481143- (Pylaiella littoralis U1_48)back to top |