mRNA_P-littoralis_Contig159.98.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig159.98.1
Unique NamemRNA_P-littoralis_Contig159.98.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
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BLAST of mRNA_P-littoralis_Contig159.98.1 vs. uniprot
Match: A0A6H5J557_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J557_9PHAE)

HSP 1 Score: 122 bits (307), Expect = 1.990e-28
Identity = 74/179 (41.34%), Postives = 98/179 (54.75%), Query Frame = 3 
Query:   57 SKENSKHLAMVQNAAVY*QCLVTKRKIGTTNTEGRDAHAKQNYLDHTVPGFFAWWNKSCKLPIPTWLTPKLMGQSTLTDQSEMLCTVDGAIW---SKYSDAGKIIKRDFNLLWGSFRTADGELPSGQQETDAWENLQDGLYYTWKKENEKVKMRNKRNKVAKNNPVVLTGGEGDQTLSG 584
            +K+  KHL+++QNAA Y QCLVTKR+ GT +T+ RDAHA+ NY + TVP F  WW        P+WLT  LMG +T  D      TV    W   S Y  A +          G F   DG+LPSG Q  D WENLQ  L++  ++   + K     N  AK+ P+VLTG +  +T +G
Sbjct:   24 TKQTPKHLSLIQNAAAYYQCLVTKREAGTMSTQQRDAHARTNYKNFTVPSFLCWWKTVVIQTPPSWLTQDLMGMTTGNDSGSTTPTV----WFGPSTYRVAVRSGGTSTESGTGDF-LVDGDLPSGMQAEDIWENLQLYLWFEDRRTAGRKKEVAAANARAKSQPIVLTGDDDGETEAG 197
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig159.98.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5J557_9PHAE1.990e-2841.34Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig159contigP-littoralis_Contig159:471240..473484 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size774
Hectar predicted targeting categoryother localisation
Exons3
Cds size504
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789762.516917-UTR-P-littoralis_Contig159:471239..4715081680789762.516917-UTR-P-littoralis_Contig159:471239..471508Pylaiella littoralis U1_48UTRP-littoralis_Contig159 471240..471508 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789762.5275986-CDS-P-littoralis_Contig159:471508..4715431680789762.5275986-CDS-P-littoralis_Contig159:471508..471543Pylaiella littoralis U1_48CDSP-littoralis_Contig159 471509..471543 +
1680789762.5412626-CDS-P-littoralis_Contig159:472152..4722391680789762.5412626-CDS-P-littoralis_Contig159:472152..472239Pylaiella littoralis U1_48CDSP-littoralis_Contig159 472153..472239 +
1680789762.5505292-CDS-P-littoralis_Contig159:473102..4734841680789762.5505292-CDS-P-littoralis_Contig159:473102..473484Pylaiella littoralis U1_48CDSP-littoralis_Contig159 473103..473484 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig159.98.1prot_P-littoralis_Contig159.98.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig159 471509..473484 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig159.98.1

>prot_P-littoralis_Contig159.98.1 ID=prot_P-littoralis_Contig159.98.1|Name=mRNA_P-littoralis_Contig159.98.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=168bp
MGQSTLTDQSEMLCTVDGAIWSKYSDAGKIIKRDFNLLWGSFRTADGELP
SGQQETDAWENLQDGLYYTWKKENEKVKMRNKRNKVAKNNPVVLTGGEGD
QTLSGESTAAREKAQQQSIAEVAAARQGATADSQSAPISTVSAVAAKWMA
RQAAESVRADITGTREGQ
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mRNA from alignment at P-littoralis_Contig159:471240..473484+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig159.98.1 ID=mRNA_P-littoralis_Contig159.98.1|Name=mRNA_P-littoralis_Contig159.98.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=2245bp|location=Sequence derived from alignment at P-littoralis_Contig159:471240..473484+ (Pylaiella littoralis U1_48)
TACCCCTGGTCACTAATGATCTCTCGGCTATGCTGCTCACAACCATCGGG
AATTGTTCCAAGGAGAACTCGAAGCATCTAGCGATGGTTCAAAACGCGGC
TGTGTACTAGCAGTGCCTCGTGACGAAGCGCAAGATCGGCACCACAAACA
CCGAAGGACGGGATGCACACGCAAAGCAGAACTACCTCGACCACACCGTT
CCTGGTTTCTTTGCCTGGTGGAATAAGTCCTGCAAGCTGCCGATTCCTAC
GTGGCTGACGCCGAAGCTCATGGGCCAGAGCACGCTGACTGATCAAAGTG
AGATGCGGAAAGATTTGTAGGGTGGAGCAGCTGCAGCAGCAGCAGCAGCG
GCACAGCTGCTGCAGCGGCAGCAGTAACAGCAGTACCGGTACCAGTGTTT
GCGTGCCACAAACTCTCAAGCAGGCTCACACCAGCTATATTGTCGCCTCT
GTGCTGTTTCAGCCTTCGATTGCGAGTTCATCTGCCGGCACATCCAATAG
GGTTTGCTGCACACATCATATCGTGGAATAACTTTGTCGAGAAAGAAAAA
GAAACAACAACAGTCTGCTGTATCTGATTACTACCTTGTACGTATCATTT
GCTCGTTCCCAAGGACAGCAATACAACAGCAGCAGTATATACAACACCAC
GCCTCTGCATCACGAACGACGCACATCCGACGAACTGTGTGCGTTGTGCG
GCAACACTCTGTCTACCTGATTTATTATTAATTATTTACATGAAGCTTTG
TATTGCTGCCCAGTGCTTTGGCTTGTTCATAGCTTGAAGCCCTTTGCCGA
GTGAGACGCTCGAAACCATGCCGACATAGCAGTGCTCGACGAATAGCCCT
CCACCCCGTTGGCCTCCCCATTGCGTCCCGTCACGTTGTTGCCCCCGTGC
AGCTAATTAATAGGCTGTGCACAGTTGATGGTGCTATCTGGAGCAAGTAC
TCGGACGCTGGCAAAATTATTAAGAGGGACTTCAACCTCCTCTGGGGCAG
GTGAGCGGCGATGACGGTGTTCCCAAGTACTTTTGTAGACCTGTTTGCCA
GATACAATCGACAAATCAAGATCGAGGTTGTAGGTCCTAGCGCAACAGAC
CTCGTGGTGGGATACGGATGACACGGCAGGGTTTGCCTGTAGAGCAACGC
AATGAACATGGATATAGGTACAGGCACCACCCGTTTGAGAAGCCGAAGAC
ATCTATTGATGAGTGACTAGCGGTCATGTAGGCGATGACGCAGGTCCGAG
CCCGCAGCATATACATCGTCGCTGCAAGATGGGTGACACGCACTAAATAC
GACCGACAAACAGCAGCAGTAGACAACATCAGGGTGCTCTGTTTTCTCGT
CTGCTCCGCACCTTTGTGAGCCAATGTTGAAGAATGGCTCCAAATACCAC
TAATGCCACAAAAGTTTTTTCCGTTTTCTCGCAAAAGGGGTGTAAACCTC
CGATTGGTCGCTGCATATGTGCCATGTCTCTTGTTGCGTTAAATGAGCGC
CACGAGTAAACGTTACCGCTGCAAGTGGTCCGCCAAGTTCTGTGCGTTCT
TGCGTACCCAACTTCACGCCCCTAGCCGCCAAGGCATTTGCGTGTATGTG
AAACACTTTGGTCTGGCTCTCTACGCTCTCATTCACGTGATGATTGGTGT
ACATTTTCTCTACTGGTAGTCGACTCGAGGATCTGACTTTTGTTTTGCAC
GTTTGACAATTGCAAGTACCACGCGCAGCTCATACTATCGTGCGTCGGAG
CTCGGACCATCTGTATCTCAATGTGTTGGTCGAAGACGACACAGCATGCT
CGCCAGAAAATTTACCAAAGGTTTTTTGTTGTCGAATCCTCTGCGTTCCG
TGTTTGTTGCCAGTTTTAGGACAGCAGATGGTGAACTTCCTTCAGGACAG
CAGGAGACCGACGCCTGGGAAAACCTGCAGGACGGGCTATACTACACCTG
GAAGAAAGAGAACGAGAAGGTGAAGATGCGGAACAAGCGAAACAAAGTGG
CGAAGAATAATCCCGTGGTGTTGACGGGAGGCGAGGGGGACCAAACACTG
TCCGGGGAGTCGACGGCAGCCCGGGAAAAGGCACAGCAGCAGTCGATAGC
GGAGGTGGCTGCAGCAAGGCAAGGTGCGACGGCGGATTCCCAATCCGCCC
CAATATCCACCGTGTCGGCGGTGGCGGCGAAGTGGATGGCCCGGCAAGCA
GCTGAGAGCGTGAGGGCAGACATTACCGGTACCAGGGAAGGGCAA
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Coding sequence (CDS) from alignment at P-littoralis_Contig159:471240..473484+

>mRNA_P-littoralis_Contig159.98.1 ID=mRNA_P-littoralis_Contig159.98.1|Name=mRNA_P-littoralis_Contig159.98.1|organism=Pylaiella littoralis U1_48|type=CDS|length=504bp|location=Sequence derived from alignment at P-littoralis_Contig159:471240..473484+ (Pylaiella littoralis U1_48)
ATGGGCCAGAGCACGCTGACTGATCAAAGTGAGATGCTGTGCACAGTTGA
TGGTGCTATCTGGAGCAAGTACTCGGACGCTGGCAAAATTATTAAGAGGG
ACTTCAACCTCCTCTGGGGCAGTTTTAGGACAGCAGATGGTGAACTTCCT
TCAGGACAGCAGGAGACCGACGCCTGGGAAAACCTGCAGGACGGGCTATA
CTACACCTGGAAGAAAGAGAACGAGAAGGTGAAGATGCGGAACAAGCGAA
ACAAAGTGGCGAAGAATAATCCCGTGGTGTTGACGGGAGGCGAGGGGGAC
CAAACACTGTCCGGGGAGTCGACGGCAGCCCGGGAAAAGGCACAGCAGCA
GTCGATAGCGGAGGTGGCTGCAGCAAGGCAAGGTGCGACGGCGGATTCCC
AATCCGCCCCAATATCCACCGTGTCGGCGGTGGCGGCGAAGTGGATGGCC
CGGCAAGCAGCTGAGAGCGTGAGGGCAGACATTACCGGTACCAGGGAAGG
GCAA
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