mRNA_P-littoralis_Contig159.48.3 (mRNA) Pylaiella littoralis U1_48
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Overview
Homology
BLAST of mRNA_P-littoralis_Contig159.48.3 vs. uniprot
Match: D7FVR7_ECTSI (DEAD box helicase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FVR7_ECTSI) HSP 1 Score: 912 bits (2358), Expect = 0.000e+0 Identity = 507/598 (84.78%), Postives = 526/598 (87.96%), Query Frame = 2
Query: 485 SFDRRRDDRYHSVDKGGYGSISDTDKGGRGYYDQAGEGRSGRGEARVLGXXXXXXXXXXXXXXXXXXXXXXXEGQGLGYEGDDYVRGGRSSRQSGGRXXXXXXXRQDFEGVERRHRNDFGGGGDGRGTRREETGRGGVWGYEDDDD-VVEIRPARAPADVAVRVEPASGADGEADDGSLGSRMGPVDREHFYSVKSLPDIGASDIAVSALKSLGVLRPSKIQAISYSTILTGEHCVVADQTGSGKTLAYLAPLVQRLRLEELAKVHGRARPGRPRVLILAPTAELAQQVHGVAQRLSGSVPFRSCCFTGGPGRTFKTQAKLLEEGVDVLVATPGRVATLLEAGVLNLEDCRAVILDEVDVLFMDETFQLAPIGTCAPEDTQFIFVTATLPQSVSDMLKEEFPGTKFLLGPGLHRVAPGVEEVLIDCSGPPDEPRNEETGMARKRDALLSQLERRMALRTLVFCNTIQGCRQASLAVENMLSRASRSGQFETLVYHSAIDPKQAARNMQQFMRSNALSPMVMVCTDRSSRGMDFDRAEVEHVLLYDFPRDPIEYMRRVGRTARAGRKGVVTVLAWGRQVPLVREIMAGNKRGKRLLSLD 2275
SFDR +DD Y VD+GGY S + GG G YDQ + R GRG R G XXXXXXXXXXXX G+ L +EGD + RGGR+S +GGRXXXXXXXRQ FEG R+ R +F R ETGRG VWGYEDDDD VV IRP RAPAD VRVE + G DGE DDGSLGSRMGPVDREHFYS+KSLPDIGASD+AVSALKSLGV+RPSKIQAISYS ILTG+HCVVADQTGSGKTLAYLAPLVQRLRLEELA+VHGRARPGRPRVLILAPTAELAQQV+GVAQRLSGSVPFRSCCFTGGPGRTFKTQAKLLEEGVDVLVATPGRVATLLEAGVLNLEDCRAVILDEVDVLFMDETFQLAPIGTCAPEDTQFIFVTATLPQSVSDMLKEEFPGTKFLLGPGLHRVAPGVEEVLIDCSGPP EPRNEETG+ARKRDALLSQLERRMALRTLVFCNTIQGCRQ VENMLSRASR GQFETLVYHSAIDPKQAA NMQQFMRSNALSPMVMVCTDRSSRGMDFDRAEVEHVLLYDFPRDPIEYMRRVGRTARAGRKGVVTVLAWGRQVPLVREIMAGNKRGKRLLSLD
Sbjct: 22 SFDRSQDDSYGFVDEGGY---SGNNYGGGGGYDQGDQARGGRGAERGYGRAXXXXXXXXXXXXRRGYFTDGRGGEALDFEGDGFNRGGRNSGPAGGRXXXXXXXRQSFEGGGRQQRGEFXXXXXXXXGRAHETGRGEVWGYEDDDDDVVGIRPTRAPADATVRVESSVGPDGEVDDGSLGSRMGPVDREHFYSIKSLPDIGASDLAVSALKSLGVVRPSKIQAISYSAILTGDHCVVADQTGSGKTLAYLAPLVQRLRLEELAEVHGRARPGRPRVLILAPTAELAQQVYGVAQRLSGSVPFRSCCFTGGPGRTFKTQAKLLEEGVDVLVATPGRVATLLEAGVLNLEDCRAVILDEVDVLFMDETFQLAPIGTCAPEDTQFIFVTATLPQSVSDMLKEEFPGTKFLLGPGLHRVAPGVEEVLIDCSGPPGEPRNEETGLARKRDALLSQLERRMALRTLVFCNTIQGCRQ----VENMLSRASRGGQFETLVYHSAIDPKQAASNMQQFMRSNALSPMVMVCTDRSSRGMDFDRAEVEHVLLYDFPRDPIEYMRRVGRTARAGRKGVVTVLAWGRQVPLVREIMAGNKRGKRLLSLD 612
BLAST of mRNA_P-littoralis_Contig159.48.3 vs. uniprot
Match: A0A836CPS5_9STRA (P-loop containing nucleoside triphosphate hydrolase protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CPS5_9STRA) HSP 1 Score: 548 bits (1413), Expect = 7.510e-183 Identity = 281/395 (71.14%), Postives = 327/395 (82.78%), Query Frame = 2
Query: 1100 VSALKSLGVLRPSKIQAISYSTILTGEHCVVADQTGSGKTLAYLAPLVQRLRLE-ELAKVHGRARPGRPRVLILAPTAELAQQVHGVAQRLSGSVPFRSCCFTGGPGRTFKTQAKLLEEGVDVLVATPGRVATLLEAGVLNLEDCRAVILDEVDVLFMDETFQLAPIGTCAPEDTQFIFVTATLPQSVSDMLKEEFPGTKFLLGPGLHRVAPGVEEVLIDCSGPPDEPRNEETGMARKRDALLSQLERRM-ALRTLVFCNTIQGCRQASLAVENMLSRASR-SGQFETLVYHSAIDPKQAARNMQQFMRSNALSPMVMVCTDRSSRGMDFDRAEVEHVLLYDFPRDPIEYMRRVGRTARAGRKGVVTVLAWGRQVPLVREIMAGNKRGKRLLSLD 2275
+ AL LG+ RPSKIQA +Y ++L G HCV+A+QTGSGKTLAYL PL QR L +L GRA+PGRPRVLIL+PT+ELAQQVH VA+R+SG+ P R+CCFTGG G ++QA+LL EGVDVLVATPGRV TLLE G L+L DCRAV+LDEVDVLF+DETF+LAPIG AP+ QF+FVTATLP V++M+K EFPGTKF+ GPGLHRVAPGVEEVL+DCSGPP+E +NE TG ARKR+AL++QL RR ALRTLVFCNTI+ CR+ VEN L R R S +F L YHSAIDP A N+++F RSNAL PM++VCTDRSSRGMDFD A V+HV+LYDFPRDPIEYMRRVGRTARAGRKGVVTVLAWGRQVPL REIMAGNK GKRLL+L+
Sbjct: 1 MEALTVLGMTRPSKIQAAAYRSVLEGHHCVIAEQTGSGKTLAYLLPLFQRWVLSAQLFLAAGRAQPGRPRVLILSPTSELAQQVHSVARRISGAAPLRTCCFTGGGGA--RSQAQLLAEGVDVLVATPGRVGTLLEDGSLSLADCRAVVLDEVDVLFLDETFKLAPIGAQAPDGAQFLFVTATLPTEVAEMVKAEFPGTKFITGPGLHRVAPGVEEVLVDCSGPPEEAKNEATGAARKREALMTQLTRRSGALRTLVFCNTIRSCRE----VENTLRRTDRRSARFSVLAYHSAIDPAAATANLREFSRSNALQPMILVCTDRSSRGMDFDSASVDHVVLYDFPRDPIEYMRRVGRTARAGRKGVVTVLAWGRQVPLAREIMAGNKLGKRLLALE 389
BLAST of mRNA_P-littoralis_Contig159.48.3 vs. uniprot
Match: A0A7S4DKM7_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S4DKM7_HETAK) HSP 1 Score: 451 bits (1161), Expect = 6.940e-143 Identity = 240/427 (56.21%), Postives = 308/427 (72.13%), Query Frame = 2
Query: 1049 HFYSVKSLPDIGASDIAVSALKSLGVLRPSKIQAISYSTILTGEHCVVADQTGSGKTLAYLAPLVQRLRLEELAKVHGRARPGRPRVLILAPTAELAQQVHGVAQRLSGSVPFRSCCFTGGPGRTFKTQAKLLEEG-VDVLVATPGRVATLLEAGVLNLEDCRAVILDEVDVLFMDETFQLAPIGTCAPEDTQFIFVTATLPQSVSDMLKEEFPGTKFLLGPGLHRVAPGVEEVLIDCSGPPDEPRNEETGMARKRDALLSQLERRMALRTLVFCNTIQGCRQASLAVENMLSRASRSGQFETLV-YHSAIDPKQAARNMQQFMRSNALSPMVMVCTDRSSRGMDFDRAEVEHVLLYDFPRDPIEYMRRVGRTARAGRKGVVTVLAWGRQVPLVREIMAGNKRGKRLLSL---DG*KCDGSDTDSQV 2314
+FYS K +IGASD + AL++ G+ RPSKIQA+++ + G ++ADQTGSGKTLAYL PLV+RLR EE+A RARPG PR+L+LAPTAELA QVH VA+ LS + P RS C TG FK Q +LL+E VD+L+ATPGRVA LLE VL LE RA +LDEVDVLF+DE+F L +G AP TQF+FVTATLP V+D + EFP K ++GPGLH+V+P +E+V+IDCSGP E + EETG A KR AL + A RTLVFCNTI+ CR+ VEN L R + G L+ YH+AI+P++ +++ FMRSN+L+PMV++CTDR+SRGMDF++AEV+HV+L+DFPRD EY+RRVGRTARAGRKG VT L +GRQ+ L REI+ N+ G+RL L G K + D D ++
Sbjct: 110 YFYSQKEFQEIGASDEGIKALEAFGIKRPSKIQAMAHRVLSAGHTAIIADQTGSGKTLAYLLPLVERLRAEEVADPGCRARPGAPRMLVLAPTAELAAQVHLVAKGLSATCPLRSMCVTGSAD--FKQQVRLLKENPVDLLIATPGRVANLLEREVLTLEALRAAVLDEVDVLFLDESFDLGAVGAGAPRATQFVFVTATLPGEVADQVAGEFPDVKQVIGPGLHKVSPNLEQVIIDCSGPEGEKKTEETGFAHKRAALAQLMLTVRAHRTLVFCNTIENCRK----VENALRRLDKRGDKHILLPYHNAIEPQKRGEHLRTFMRSNSLNPMVLICTDRASRGMDFEQAEVDHVVLFDFPRDAAEYVRRVGRTARAGRKGRVTALVFGRQLGLAREIIRLNRSGERLAELPSKSGSKDNQQDDDERM 530
BLAST of mRNA_P-littoralis_Contig159.48.3 vs. uniprot
Match: A0A0G4ET85_VITBC (Uncharacterized protein n=2 Tax=Vitrella brassicaformis TaxID=1169539 RepID=A0A0G4ET85_VITBC) HSP 1 Score: 436 bits (1122), Expect = 7.030e-139 Identity = 232/410 (56.59%), Postives = 293/410 (71.46%), Query Frame = 2
Query: 1040 DREHFYSVKSLPDIGASDIAVSALKSLGVLRPSKIQAISYSTILTGEHCVVADQTGSGKTLAYLAPLVQRLRLEELAKVHGRARPGRPRVLILAPTAELAQQVHGVAQRLSGSVPFRSCCFTGGPGRTFKTQAKLLEE-GVDVLVATPGRVATLLEAGVLNLEDCRAVILDEVDVLFMDETFQLAPIGTCAPEDTQFIFVTATLPQSVSDMLKEEFPGTKFLLGPGLHRVAPGVEEVLIDCSGPPDEPRNEETGMARKRDALLSQLERRMALRTLVFCNTIQGCRQASLAVENMLSRASRSGQ-FETLVYHSAIDPKQAARNMQQFMRSNALSPMVMVCTDRSSRGMDFDRAEVEHVLLYDFPRDPIEYMRRVGRTARAGRKGVVTVLAWGRQVPLVREIMAGNKRGKRL 2263
D E F+S K DIGASD + A+ G RPSKIQA+SY T+L+G++CVVADQTGSGKTLAYLAPL+QRLR EE A RA PG PRV++LAPT ELA QV V ++L+ P R+ C TGG + Q +++E GVD+LVATPGR+ ++L+ G LNL A++LDEVDVLF+D+TF L PIG TQF+FVTAT+P SV +K+EFP + ++GPGLHR+APGVEEVL+DCSGP DE +NE T RKR AL QL++ + RTL+FCN+I+ CR+ VEN L R R + F+ L YHS ID ++ F R N L PMV+V TD++SRG+DFD+ EV HV+L+DFPRDP EY+RRVGRTARAGR G VT L GRQV L RE+M N+RG+R+
Sbjct: 36 DDELFFSRKQFADIGASDEMIEAMSIAGAKRPSKIQALSYRTVLSGKNCVVADQTGSGKTLAYLAPLLQRLRDEERAG-KPRALPGSPRVVVLAPTTELASQVSRVLKKLTAVAPVRTACVTGGYNA--RDQMRMVERSGVDILVATPGRLRSMLQMGKLNLHQLSALVLDEVDVLFLDDTFLLQPIGEATAPSTQFVFVTATIPTSVFAQIKQEFPDLRRIMGPGLHRIAPGVEEVLVDCSGPKDEAKNEFTAFERKRKALAGQLDKVVVPRTLIFCNSIENCRR----VENALRRLDRGRKRFQVLPYHSGIDNERRREIFNAFTRENFLIPMVLVSTDQASRGVDFDQVEVGHVILFDFPRDPSEYVRRVGRTARAGRAGRVTSLVLGRQVSLARELMEVNRRGERI 438
BLAST of mRNA_P-littoralis_Contig159.48.3 vs. uniprot
Match: A0A7S2V2H4_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2V2H4_9STRA) HSP 1 Score: 436 bits (1120), Expect = 4.820e-137 Identity = 235/441 (53.29%), Postives = 316/441 (71.66%), Query Frame = 2
Query: 953 ADVAVRVEPASGADGEADDGSLGSRMGPVDREHF-YSVKSLPDIGASDIAVSALKSLGVLRPSKIQAISYSTILTGEHCVVADQTGSGKTLAYLAPLVQRLRLEELAKVHG-RARPGRPRVLILAPTAELAQQVHGVAQRLSGSVPFRSCCFTGGPGRTFKTQAKLLE-EGVDVLVATPGRVATLLEAGVLNLEDCRAVILDEVDVLFMDETFQLAPIGTCAPEDTQFIFVTATLPQSVSDMLKEEFPGTKFLLGPGLHRVAPGVEEVLIDCSGPPDEPRNEETGMARKRDALLSQLERRMALRTLVFCNTIQGCRQASLAVENMLSRASRSGQFE-TLVYHSAIDPKQAARNMQQFMRSNALSPMVMVCTDRSSRGMDFDRAEVEHVLLYDFPRDPIEYMRRVGRTARAGRKGVVTVLAWGRQVPLVREIMAGNKRGKRL 2263
A A RV P GA D S+ R+G +D E F YS K+L +IG A AL +GV RPSKIQ+++Y T+L+G+ C++ADQTGSGKTLAYL P++QRLR EE RA+PG+PRV+ILAPTAELA QVH V + LS + S CFTG + QA+LL+ +G+D++VATPGR+ +LLE G L+L +++LDEVDVL+++E F L +G AP +TQF+FVTATLP+ V + +KEEFP K +LGPGLHRV+P +++V++DCSGP E E++G KR+AL L A RTLVFCNTI+ CR+ VEN + R ++ GQ L +H+AIDP++ ++++ FMR N+L PM+++CTDR+SRGMDFD A+VEHV+L+DFPRDP EYMRRVGRTARAGR G VT L +GRQ+ + R+I+ N+ G+RL
Sbjct: 114 AQAAQRVAP--GAGNRVLDKSI--RVGALDPEQFFYSKKALEEIGVDKEAEEALAQMGVTRPSKIQSLAYRTVLSGDSCLLADQTGSGKTLAYLLPIMQRLREEEQHFGDAARAQPGKPRVIILAPTAELAVQVHQVVKGLSAQIKLTSMCFTGQQYDP-RQQARLLQKQGLDIVVATPGRLNSLLERGALDLSSTTSIVLDEVDVLYLEENFNLNQVGVNAPMNTQFVFVTATLPELVVEQVKEEFPDIKTILGPGLHRVSPNLDQVIVDCSGPWGEKHTEDSGFRHKREALTELLATVPAQRTLVFCNTIENCRK----VENAVQRWNKKGQKALVLAHHNAIDPERRGKHLRSFMRPNSLLPMILICTDRASRGMDFDTADVEHVILFDFPRDPSEYMRRVGRTARAGRTGRVTSLVFGRQLGMARDIIRANREGERL 545
BLAST of mRNA_P-littoralis_Contig159.48.3 vs. uniprot
Match: W7TFZ4_9STRA (Dead-box atp-dependent rna helicase 50-like protein n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TFZ4_9STRA) HSP 1 Score: 414 bits (1063), Expect = 4.500e-130 Identity = 228/428 (53.27%), Postives = 295/428 (68.93%), Query Frame = 2
Query: 998 EADDGSLGS-RMGPVDREHFYSVKSLPDIGASDIAVSALKSLGVLRPSKIQAISYSTILTGEHCVVADQTGSGKTLAYLAPLVQRLR-LE---ELAKVHGRARPGRPRVLILAPTAELAQQVHGVAQRLSGSVPFRSCCFTGGPGRTFKTQAKLLEEGVDVLVATPGRVATLLEAGVLNLEDCRAVILDEVDVLFMDETFQLAPIGTCAPEDTQFIFVTATLPQSVSDMLKEEFPGTKFLLGPGLHRVAPGVEEVLIDCSGPPDEPRNEETGMARKRDALLSQLERRMALRTLVFCNTIQGCRQASLAVENMLSRASRSGQ-FETLVYHSAIDPKQAARNMQQFMRSNALSPMVMVCTDRSSRGMDFDRAEVEHVLLYDFPRDPIEYMRRVGRTARAGRKGVVTVLAWGRQVPLVREIMAGNKRGKRL 2263
EAD+G L R + F+S K+ +IGAS A +AL S+G+ RPSK+Q I+Y IL G C++A+QTGSGKTLAYL PL+QRLR LE E GRA P PRV++LAPTAELA QV VA+ ++ +P R CC TGG + +TQ ++L++GVDVL+ TPGRV LLE + L + +A++LDEVDV+F+D++F LA IG AP TQF+FVTATLP V+D + EFPG K L GPGLH++AP VEEVL+DCSGP +E RNEETG RKRD L+ L + A R+LVFCN+I CR+ VEN L RA R + ++ L YHSA++P+ +N+ F S P++MVCTDR+SRG+DFD A+V+HV+L+DFPRDP EY+RRVG VT L GRQV L R IM GN +G R+
Sbjct: 28 EADEGGLDEERAARLADTFFFSRKTFEEIGASPEARAALGSMGIARPSKVQTIAYPHILQGSSCIIAEQTGSGKTLAYLLPLLQRLRGLEGGGEGKGGLGRAPPKSPRVVVLAPTAELAAQVASVARAMTRHMPLRVCCVTGG--KNPRTQGEMLKQGVDVLIGTPGRVQYLLEENKVLLGEMQALVLDEVDVMFLDDSFDLAVIGAAAPAHTQFLFVTATLPVPVADQIAREFPGVKKLWGPGLHKIAPQVEEVLVDCSGPWEEERNEETGFVRKRDMLVQNLLKHPAPRSLVFCNSIPTCRK----VENALRRADRQEKRWQVLAYHSAVNPQDRQKNLDIFS-SRVERPLIMVCTDRTSRGVDFDTADVQHVVLFDFPRDPSEYVRRVGXXXXXXXXXXVTALVLGRQVGLARSIMEGNSKGARV 448
BLAST of mRNA_P-littoralis_Contig159.48.3 vs. uniprot
Match: A0A4D9D599_9STRA (Uncharacterized protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9D599_9STRA) HSP 1 Score: 414 bits (1063), Expect = 1.570e-126 Identity = 228/428 (53.27%), Postives = 295/428 (68.93%), Query Frame = 2
Query: 998 EADDGSLGS-RMGPVDREHFYSVKSLPDIGASDIAVSALKSLGVLRPSKIQAISYSTILTGEHCVVADQTGSGKTLAYLAPLVQRLR-LEELAKVHG---RARPGRPRVLILAPTAELAQQVHGVAQRLSGSVPFRSCCFTGGPGRTFKTQAKLLEEGVDVLVATPGRVATLLEAGVLNLEDCRAVILDEVDVLFMDETFQLAPIGTCAPEDTQFIFVTATLPQSVSDMLKEEFPGTKFLLGPGLHRVAPGVEEVLIDCSGPPDEPRNEETGMARKRDALLSQLERRMALRTLVFCNTIQGCRQASLAVENMLSRASRSGQ-FETLVYHSAIDPKQAARNMQQFMRSNALSPMVMVCTDRSSRGMDFDRAEVEHVLLYDFPRDPIEYMRRVGRTARAGRKGVVTVLAWGRQVPLVREIMAGNKRGKRL 2263
EAD+G L R + F+S K+ +IGAS A +AL S+G+ RPSK+Q I+Y IL G C++A+QTGSGKTLAYL PL+QRLR LE + G RA P PRV++LAPTAELA QV VA+ L+ +P R CC TGG + +TQ ++L++GVDVL+ TPGRV LLE + L + +A++LDEVDV+F+D++F LA IG AP TQF+FVTATLP V+D + EFPG K L GPGLH++AP VEEVL+DCSGP +E RNEETG RKRD L+ L + A R+LVFCN+I CR+ VEN L RA R + ++ L YHSA++P+ +N+ F S P++MVCTDR+SRG+DFD A+V+HV+L+DFPRDP EY+RRVG VT L GRQV L R IM GN +G R+
Sbjct: 294 EADEGGLDEERAARLADTFFFSRKTFEEIGASPEARAALGSMGIARPSKVQTIAYPHILQGSSCIIAEQTGSGKTLAYLLPLLQRLRGLEGGGEGEGGLGRAPPKSPRVVVLAPTAELAAQVASVARALTRHMPLRVCCVTGG--KNPRTQGEMLKQGVDVLIGTPGRVQYLLEENKVLLGEMQALVLDEVDVMFLDDSFDLAVIGGAAPAHTQFLFVTATLPVPVADQIAREFPGVKKLWGPGLHKIAPQVEEVLVDCSGPWEEERNEETGFVRKRDMLVQNLLKHPAPRSLVFCNSIPTCRK----VENALRRADRQEKRWQVLAYHSAVNPQDRQKNLDIFS-SRVERPLIMVCTDRTSRGVDFDTADVQHVVLFDFPRDPSEYVRRVGXXXXXXXXXXVTALVLGRQVGLARSIMEGNSKGARV 714
BLAST of mRNA_P-littoralis_Contig159.48.3 vs. uniprot
Match: A0A7R9YGA2_9STRA (Hypothetical protein n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9YGA2_9STRA) HSP 1 Score: 366 bits (939), Expect = 1.040e-111 Identity = 218/468 (46.58%), Postives = 286/468 (61.11%), Query Frame = 2
Query: 1043 REHFYSVKSLPDIGASDIAVSALKSLGVLRPSKIQAISYSTILTGEHCVVADQTGSGKTLAYLAPLVQRLRLEELAKVHGRARPGRPRVLILAPTAELAQQVHGVAQRL----SGSVPFRSCCFTGGPGRTFKTQAKLLEEGVDVLVATPGRVATLLEAG-----VLNLEDCRAVILDEVDVLFMDETFQLAPIGTCAPEDTQFIFVTATLPQSVSDMLKEEFPGTKFLLGPGLHRVAPGVEEVLIDCS----GPPDEPRNEETGMARKRDALLSQLERRMALRTLVFCNTIQGCRQASLAVENMLSRASRSG-QFETLVYHSAIDPKQAARNMQQFMRSNALSPMVMVCTDRSSRGMDF---------------DRAEVEHVLLYDFPRDPIEYMRRVGRTARAGRKGVVTVLAWGRQVPLVREIMAGNKRGKRLLSLDG*KCDGSDTDSQVVPVVIVSHRPTTRGS 2359
REHF+SVKS ++GAS +SAL++LGV PS+IQ++S++ +L G + VVA+QTGSGKTLAYLAPLVQR LE K + G PR+LILAPTAELA+QVH V + L V S T G + L + D++VATPGR LL+A L+L ++LDEVDVLF+D++F L PIG A QF+FVTATLPQ V L EFP + L GPGLHR APGV +VL+DCS G + ET + +K D L+S LE R RT+VFCN++ GCR+ VEN L+R R +++ L YHSA+ A R++ F N+L P+V+VCTDR+SRGMDF + A V+HV+L+DFPRD E++RRVGRT RKG+VT+LA G+QVPL R+++ +G+RL L G D S +Q R + RGS
Sbjct: 6 REHFFSVKSFAELGASAEIISALRTLGVETPSRIQSLSFAALLEGSNAVVAEQTGSGKTLAYLAPLVQRC-LEAKRKDPSK---GAPRLLILAPTAELAEQVHSVCRGLCEVVKADVTLSSLLVTSSSGSLGSIASVLRKRSTDIVVATPGRAVALLKAQGGRPPALDLSRDPCIVLDEVDVLFLDDSFGLQPIGAAASAQAQFVFVTATLPQEVLKTLTTEFPAIQVLCGPGLHRAAPGVRKVLLDCSLDGRGRASDKGTVETALQKKLDTLVSVLEARPLRRTIVFCNSVDGCRR----VENALNREDRREMKWKALPYHSAVSSDAAQRSLSTFSALNSLVPLVLVCTDRASRGMDFGFSAGRATGRPSDSIETAGVDHVILFDFPRDVAEWVRRVGRTGXXXRKGLVTILAQGKQVPLARDLIVKTSKGERLYDLPG--GDSSSRKTQRPRGSASKGRNSNRGS 463
BLAST of mRNA_P-littoralis_Contig159.48.3 vs. uniprot
Match: UPI000A2B4810 (DEAD-box ATP-dependent RNA helicase 50 n=1 Tax=Arachis ipaensis TaxID=130454 RepID=UPI000A2B4810) HSP 1 Score: 349 bits (895), Expect = 3.670e-105 Identity = 195/412 (47.33%), Postives = 276/412 (66.99%), Query Frame = 2
Query: 1049 HFYSVKSLPDIGASDIAVSALKSLGVLRPSKIQAISYSTILTGEHCVVADQTGSGKTLAYLAPLVQRLRLEELAKVHGRARPGRPRVLILAPTAELAQQVHGVAQRLSGS-VPFRSCCFTGGPGRTFKTQAKLLEEGVDVLVATPGRVATLLEAGVLNLEDCRAVILDEVDVLFMDETFQLA--PIGTCAPEDTQFIFVTATLPQSVSDMLKEEFPGTKFLLGPGLHRVAPGVEEVLIDCSGPPDEPRNEETGMARKRDALLSQLERRMALRTLVFCNTIQGCRQASLAVENMLSRASRSGQ-FETLVYHSAIDPKQAARNMQQFMRSNALS-PMVMVCTDRSSRGMDFDRAEVEHVLLYDFPRDPIEYMRRVGRTARAGRKGV--VTVLAWGRQVPLVREIMAGNKRGKRL 2263
+F+SVKS ++G +D + +L+ L RPS +QA++++ ++ G+ C++ADQ+GSGKTLAYLAP++QRLR EEL + H ++ P PRV+ILAPTAELA QV + LS S VPF+S TGG + +TQ + L++GVDVL+ATPGR L++ G L L + R V+LDEVD+LF DE F++A + +P TQ++FVTATLP+ V L E FP + ++GP +HR++P +EE+++DCSG + + +T K+ ALL E R RT+VFCN I+ CR+ VEN L R R G + L +H+A+ + +M++F RS + MVCTDR+SRG+DF VEHV+L+DFPRDP EY+RRVGRTAR G KGV + G+QV L R+IM N++G L
Sbjct: 80 NFFSVKSFRELGCADYLIQSLQKLSFPRPSNVQAMAFAPVIAGKTCIIADQSGSGKTLAYLAPIIQRLRQEEL-EGHSKSSPQAPRVVILAPTAELASQVLDNCRSLSRSGVPFKSMVVTGGFRQ--RTQLETLQQGVDVLIATPGRFLFLMKEGFLQLTNLRCVVLDEVDILFGDEDFEVALQSLINSSPITTQYLFVTATLPRDVYSKLVEIFPDCEMIMGPSMHRISPRLEEIIVDCSGEDGQEKTTDTAFLNKKSALLQLAEERPVPRTIVFCNKIETCRK----VENALKRIDRKGAVIQVLPFHAAMTQESRLASMKEFARSPSKQVSQFMVCTDRASRGIDF--WGVEHVILFDFPRDPSEYVRRVGRTAR-GAKGVGKAFIFVVGKQVSLARKIMERNRKGHPL 481
BLAST of mRNA_P-littoralis_Contig159.48.3 vs. uniprot
Match: A0A8J9WRI4_9CHLO (DEAD-box ATP-dependent RNA helicase 50 n=1 Tax=Coccomyxa sp. Obi TaxID=2315456 RepID=A0A8J9WRI4_9CHLO) HSP 1 Score: 352 bits (902), Expect = 1.800e-104 Identity = 208/420 (49.52%), Postives = 273/420 (65.00%), Query Frame = 2
Query: 1025 RMGPVDREHFYSVKSLPDIGASDIAVSALKSLGVLRPSKIQAISYSTILTG-EHCVVADQTGSGKTLAYLAPLVQRLRLEELAKVHGRARPGRPRVLILAPTAELAQQVHGVAQRLSGSVPFRSCCFTGGPGRTFKTQAKLLEEGVDVLVATPGRVATLLEAGVLNLEDCRAVILDEVDVLFMDETF----QLAPIGTCAPEDTQFIFVTATLPQSVSDMLKEEFPGTKFLLGPGLHRVAPGVEEVLIDCSGPPDEPRNEETGMARKRDALLSQLERRMALRTLVFCNTIQGCRQASLAVENMLSRASRSGQFETLV---YHSAIDPKQAARNMQQFMRSNALSP-MVMVCTDRSSRGMDFDRAEVEHVLLYDFPRDPIEYMRRVGRTAR-AGRKGVVTVLAWGRQVPLVREIMAGNKRG 2254
R GP F++ S D+GA+D V AL+ +GV RPS IQA +Y +++G H V+AD GSGKTLAYL PLVQ LR EE + PRV+I+APT EL QV VA+ L+ PFR+ TGG +KTQ + L+EGVDV+VATPGR+ ++AG L L+ CRAV+LDEVDVL D TF Q+AP+ + APE T+F+ VTATL + V L+++FPG GPGLHR APGV E L+DCSG + NEETG RK ALL L+ + A RT+VFCN I+ CR+ VEN+L R E LV YH+AI+ ++ ++ F+ P MV+VCTDR+SRG+D A VEHV+L+DFPRDP EY+RR GR +R AG GVV++L GRQV L ++++ N++G
Sbjct: 207 RRGPGSTATFFTQSSFKDVGANDEIVKALRGIGVERPSFIQAAAYQVLMSGARHIVLADHAGSGKTLAYLLPLVQALREEEQSLCDSLTMRNAPRVIIIAPTTELCAQVLMVARGLAKGAPFRAIALTGG--FKWKTQKEALDEGVDVVVATPGRLGEHIKAGNLRLDQCRAVVLDEVDVLLGD-TFAFAQQVAPLRSAAPESTRFVLVTATLAEPVYLQLQQDFPGITPAFGPGLHRTAPGVLEQLVDCSG--GDVINEETGFERKAAALLRVLKEQGASRTIVFCNKIETCRK----VENLLKRKGDDANKEELVVLPYHAAIEDGVRSKALKTFLAPPMGGPKMVLVCTDRASRGID--SAHVEHVVLFDFPRDPSEYVRRAGRVSRGAGASGVVSILVLGRQVSLAKQLLERNQKG 615 The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig159.48.3 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_P-littoralis_Contig159.48.3 >prot_P-littoralis_Contig159.48.3 ID=prot_P-littoralis_Contig159.48.3|Name=mRNA_P-littoralis_Contig159.48.3|organism=Pylaiella littoralis U1_48|type=polypeptide|length=714bp MVVDRSRRSSSQSLWPRRCMGAWSSALLGSSLLSVPSGTFVTAFTTFNGFback to top mRNA from alignment at P-littoralis_Contig159:210381..222874- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_P-littoralis_Contig159.48.3 ID=mRNA_P-littoralis_Contig159.48.3|Name=mRNA_P-littoralis_Contig159.48.3|organism=Pylaiella littoralis U1_48|type=mRNA|length=12494bp|location=Sequence derived from alignment at P-littoralis_Contig159:210381..222874- (Pylaiella littoralis U1_48)back to top Coding sequence (CDS) from alignment at P-littoralis_Contig159:210381..222874- >mRNA_P-littoralis_Contig159.48.3 ID=mRNA_P-littoralis_Contig159.48.3|Name=mRNA_P-littoralis_Contig159.48.3|organism=Pylaiella littoralis U1_48|type=CDS|length=2142bp|location=Sequence derived from alignment at P-littoralis_Contig159:210381..222874- (Pylaiella littoralis U1_48)back to top |