mRNA_P-littoralis_Contig159.14.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig159.14.1
Unique NamemRNA_P-littoralis_Contig159.14.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
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BLAST of mRNA_P-littoralis_Contig159.14.1 vs. uniprot
Match: D8LMP5_ECTSI (RING-type domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LMP5_ECTSI)

HSP 1 Score: 166 bits (419), Expect = 1.350e-44
Identity = 86/146 (58.90%), Postives = 103/146 (70.55%), Query Frame = 1 
Query:   43 VNVSRPSPKEAD-NGIDEGEHCLICRERLPDVYRGIIQCGHVFCFVCIHKWVKKQQSSCPACRAEVRHIKKTLSMAEIEEKNRNWKPPTKAQMKRDKRKSAIGKRPVRPYIIAKTIRVRFKQSEEQARQNRMAPHPQAAGGFLHDQ 477
            VN + P  K  +   +D+   C IC++ LP+  RGI++CGHVFC  C+ +WVKKQQ+SCP CRA+V HIKKTLS+AE  EKN N KP TKAQ+KR KRKS IGK   +P I  + IRV  K S EQ RQN MAPHPQA GGFLH Q
Sbjct:   36 VNAAHPRTKRKNPEKVDDKARCPICQDLLPEENRGIVKCGHVFCLKCVLQWVKKQQNSCPTCRAKVCHIKKTLSLAEALEKNANRKPLTKAQLKRTKRKSTIGKPFPKPDITTEKIRVHKKVSREQIRQNAMAPHPQAPGGFLHAQ 181
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BLAST of mRNA_P-littoralis_Contig159.14.1 vs. uniprot
Match: A0A6H5JQU9_9PHAE (RING-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JQU9_9PHAE)

HSP 1 Score: 159 bits (403), Expect = 2.310e-42
Identity = 86/158 (54.43%), Postives = 105/158 (66.46%), Query Frame = 1 
Query:   43 VNVSRPSPKEAD-NGIDEGEHCLICRERLPDVYRGIIQCGHVFCFVCIHKWVKKQQSSCPACRAEVRHIKKTLSMAEIEEKNRNWKPPTKAQMKRDKRKSAIGKRPV------------RPYIIAKTIRVRFKQSEEQARQNRMAPHPQAAGGFLHDQ 477
            VN +RP  +  +    D+G+ C IC++ LP+  RGI++CGHVFC  C+ +WVKKQQ+SCP CRAEV HIK+TLS AE  EKN + KPP KAQ+KR KRKSA+GK               +P I  + IRVR K S EQ RQN  APHPQA GGFLH Q
Sbjct:   60 VNAARPRTRRKNPEKDDDGDRCPICQDLLPEENRGILKCGHVFCLKCVLQWVKKQQNSCPTCRAEVCHIKRTLSSAEALEKNADRKPPRKAQLKRAKRKSAVGKPSPGDRYSESDVLQQKPDITTEKIRVRKKVSREQIRQNATAPHPQAPGGFLHAQ 217
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BLAST of mRNA_P-littoralis_Contig159.14.1 vs. uniprot
Match: D7FGV7_ECTSI (Similar to PHD finger family protein, partial n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FGV7_ECTSI)

HSP 1 Score: 102 bits (255), Expect = 5.020e-23
Identity = 56/135 (41.48%), Postives = 79/135 (58.52%), Query Frame = 1 
Query:  103 CLICRERLPDVYRGIIQCGHVFCFVCIHKWVKKQQSSCPACRAEVRHIKKTLSMA-EIEEKNRNWKPPT---------KAQMKRDKRKSAIGKRPVRPYIIAKTIRVRFKQSEEQARQNRMAPHPQAAGGFLHDQ 477
            C IC ++LP++ RG++ CGHVFCF CIH+W K   S CP CR +++ I KTLS A E + K    KP           + Q+KR + + +  K P   ++  KT+RVR K  +    Q R APHPQA GG+++ Q
Sbjct:  176 CAICCDKLPNLERGVLSCGHVFCFACIHQWTKNS-SICPGCRVQIKRITKTLSPADEAKAKGETRKPVVSQRGMKKKPRKQLKRARHRDSRAKNPASGFVT-KTVRVRPKSLKMTPAQQRAAPHPQARGGWMYVQ 308
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BLAST of mRNA_P-littoralis_Contig159.14.1 vs. uniprot
Match: D7FGW0_ECTSI (RING-type domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FGW0_ECTSI)

HSP 1 Score: 92.0 bits (227), Expect = 1.240e-18
Identity = 59/143 (41.26%), Postives = 77/143 (53.85%), Query Frame = 1 
Query:   67 KEADNGIDEGEHCLICRERLPDVYRGIIQCGHVFCFVCIHKWVKKQQSS--CPACRAEVRHIKKTLSMAEIE-EKNRNWKPPTKAQMKRDKR-----KSAIGKRPVRPYIIAKTIRVRFKQSEEQARQNRMAPHPQAAGGFLH 471
            K A +   +GE C+IC E LPD+ RGII CGH FCF CIH W   +  S  CP+CR     IKKTLS  +IE EK RN +                 ++A  K+PV   I  K +RVR    ++QA +     HP+AAGG ++
Sbjct:   46 KAAADDAKKGELCIICLEALPDIERGIIACGHTFCFGCIHDWASNRGDSALCPSCRFPFNKIKKTLSPKDIEKEKLRNERDXXXXXXXXXXXXXXXXRAARVKQPV-DKIFVKDVRVRKMSKKKQAIEEARTVHPEAAGGSMN 187
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BLAST of mRNA_P-littoralis_Contig159.14.1 vs. uniprot
Match: A0A6H5L829_9PHAE (RING-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L829_9PHAE)

HSP 1 Score: 90.5 bits (223), Expect = 3.930e-18
Identity = 54/144 (37.50%), Postives = 75/144 (52.08%), Query Frame = 1 
Query:   46 NVSRPSPKEADNGIDEGEHCLICRERLPDVYRGIIQCGHVFCFVCIHKWVKKQQSS--CPACRAEVRHIKKTLSMAEIEEKNRNWKPPTKAQMKRDKRKSAIGKRPVRPYIIAKTIRVRFKQSEEQARQNRMAPHPQAAGGFLH 471
            +V R     AD+   +GE C+IC+E LPD+ RGII CGH FCF CIH W  +   S  CP+CR     IKKTLS  ++E               ++K ++ + K      I  K IRVR    +++A +     HP AAGG ++
Sbjct:   40 DVERTKKAAADDA-KKGELCIICQEALPDIERGIIACGHTFCFGCIHTWSSRSGDSVLCPSCRVPFNKIKKTLSPKDVE---------------KEKLRNEVDK------IFVKDIRVRKMSKKKKAIEEARTLHPDAAGGSMN 161
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BLAST of mRNA_P-littoralis_Contig159.14.1 vs. uniprot
Match: A0A6H5K2A7_9PHAE (RING-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K2A7_9PHAE)

HSP 1 Score: 78.2 bits (191), Expect = 3.620e-14
Identity = 35/67 (52.24%), Postives = 45/67 (67.16%), Query Frame = 1 
Query:  103 CLICRERLPDVYRGIIQCGHVFCFVCIHKWVKKQQSSCPACRAEVRHIKKTLSMA-EIEEKNRNWKP 300
            C IC ++LPD+ RG++ CGHVFCF CIH+W K   S CP CR +++ I KTLS A E + K    KP
Sbjct:   80 CAICCDKLPDLERGVLSCGHVFCFACIHQWTKNS-SICPGCRVQIKRITKTLSPADEAKSKGETRKP 145
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BLAST of mRNA_P-littoralis_Contig159.14.1 vs. uniprot
Match: A0A1J3G4G9_NOCCA (RING-type domain-containing protein (Fragment) n=2 Tax=Noccaea caerulescens TaxID=107243 RepID=A0A1J3G4G9_NOCCA)

HSP 1 Score: 53.5 bits (127), Expect = 1.860e-5
Identity = 26/84 (30.95%), Postives = 41/84 (48.81%), Query Frame = 1 
Query:   46 NVSRPSPKEADNGIDEGEHCLICRERLPDVYRGIIQCGHVFCFVCIHKWV-----KKQQSSCPACRAEVRHIKKTLSMAEIEEK 282
            N ++P   EA   +     C+IC        RGI+ CGH FC+ CI KWV     +++ ++CP C++    I K       ++K
Sbjct:   87 NFNKPEEAEATKKVSAQVSCIICLTEFSST-RGILPCGHRFCYSCIQKWVDLLVSERKSTTCPLCKSSFIAITKIEDAGSFDQK 169
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BLAST of mRNA_P-littoralis_Contig159.14.1 vs. uniprot
Match: F0ZEL4_DICPU (RING-type domain-containing protein n=1 Tax=Dictyostelium purpureum TaxID=5786 RepID=F0ZEL4_DICPU)

HSP 1 Score: 53.9 bits (128), Expect = 2.010e-5
Identity = 23/50 (46.00%), Postives = 29/50 (58.00%), Query Frame = 1 
Query:  103 CLICRERLPDVYRGIIQCGHVFCFVCIHKWVKKQQSSCPACRAEVRHIKK 252
            C IC  +L       I C H FC+ CIHKW K + ++CP CRAE   IK+
Sbjct:  369 CSICYNKLNTTNASTIDCSHQFCYKCIHKWCK-EDNTCPLCRAEFYRIKR 417
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BLAST of mRNA_P-littoralis_Contig159.14.1 vs. uniprot
Match: UPI001E018B19 (uncharacterized protein n=1 Tax=Ogataea philodendri TaxID=1378263 RepID=UPI001E018B19)

HSP 1 Score: 53.5 bits (127), Expect = 2.160e-5
Identity = 25/61 (40.98%), Postives = 37/61 (60.66%), Query Frame = 1 
Query:   73 ADNGI-----DEGEHCLICRERLPDVYRGIIQCGHVFCFVCIHKWVKKQQSSCPACRAEVR 240
            AD G+     +    C++C   + D   G  +CGHVFC+ CIH WVK+++  CP CRA++R
Sbjct:  230 ADPGVLPYIPENSRTCMLCLSLMKDPACG--ECGHVFCWTCIHDWVKERKE-CPLCRADMR 287
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BLAST of mRNA_P-littoralis_Contig159.14.1 vs. uniprot
Match: A0A6P4BUW5_ARADU (uncharacterized protein LOC107471428 n=9 Tax=Arachis TaxID=3817 RepID=A0A6P4BUW5_ARADU)

HSP 1 Score: 52.8 bits (125), Expect = 4.870e-5
Identity = 25/65 (38.46%), Postives = 35/65 (53.85%), Query Frame = 1 
Query:  103 CLICRERLPDVYRGIIQCGHVFCFVCIHKWVK-----KQQSSCPACRAEVRHIKKTLSMAEIEEK 282
            C+IC        RGI+ CGH FCF CIH W       ++ ++CP C+A  + IKK      I++K
Sbjct:  295 CVICHADFSAT-RGILPCGHRFCFECIHSWANHRTSTRKNATCPLCKASFQSIKKVEHADRIDQK 358
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig159.14.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 11
Match NameE-valueIdentityDescription
D8LMP5_ECTSI1.350e-4458.90RING-type domain-containing protein n=1 Tax=Ectoca... [more]
A0A6H5JQU9_9PHAE2.310e-4254.43RING-type domain-containing protein n=1 Tax=Ectoca... [more]
D7FGV7_ECTSI5.020e-2341.48Similar to PHD finger family protein, partial n=1 ... [more]
D7FGW0_ECTSI1.240e-1841.26RING-type domain-containing protein n=1 Tax=Ectoca... [more]
A0A6H5L829_9PHAE3.930e-1837.50RING-type domain-containing protein n=1 Tax=Ectoca... [more]
A0A6H5K2A7_9PHAE3.620e-1452.24RING-type domain-containing protein n=1 Tax=Ectoca... [more]
A0A1J3G4G9_NOCCA1.860e-530.95RING-type domain-containing protein (Fragment) n=2... [more]
F0ZEL4_DICPU2.010e-546.00RING-type domain-containing protein n=1 Tax=Dictyo... [more]
UPI001E018B192.160e-540.98uncharacterized protein n=1 Tax=Ogataea philodendr... [more]
A0A6P4BUW5_ARADU4.870e-538.46uncharacterized protein LOC107471428 n=9 Tax=Arach... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig159contigP-littoralis_Contig159:61101..63481 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog2880.D8LMP5
PFAMszf-RING_2
Model size493
Max annot lvl2759|Eukaryota
Hectar predicted targeting categoryother localisation
Exons5
Evalue2.21e-45
EggNOG OGs2D0HG@1|root,2SE7A@2759|Eukaryota
DescriptionRING-type zinc-finger
Cds size489
COG categoryO
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789758.8567183-CDS-P-littoralis_Contig159:61100..612561680789758.8567183-CDS-P-littoralis_Contig159:61100..61256Pylaiella littoralis U1_48CDSP-littoralis_Contig159 61101..61256 +
1680789758.8668277-CDS-P-littoralis_Contig159:61798..619271680789758.8668277-CDS-P-littoralis_Contig159:61798..61927Pylaiella littoralis U1_48CDSP-littoralis_Contig159 61799..61927 +
1680789758.8754227-CDS-P-littoralis_Contig159:62320..623951680789758.8754227-CDS-P-littoralis_Contig159:62320..62395Pylaiella littoralis U1_48CDSP-littoralis_Contig159 62321..62395 +
1680789758.8853838-CDS-P-littoralis_Contig159:62812..629021680789758.8853838-CDS-P-littoralis_Contig159:62812..62902Pylaiella littoralis U1_48CDSP-littoralis_Contig159 62813..62902 +
1680789758.8996549-CDS-P-littoralis_Contig159:63440..634791680789758.8996549-CDS-P-littoralis_Contig159:63440..63479Pylaiella littoralis U1_48CDSP-littoralis_Contig159 63441..63479 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig159.14.1prot_P-littoralis_Contig159.14.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig159 61101..63479 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig159.14.1

>prot_P-littoralis_Contig159.14.1 ID=prot_P-littoralis_Contig159.14.1|Name=mRNA_P-littoralis_Contig159.14.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=163bp
TATATATATATSVVVNVSRPSPKEADNGIDEGEHCLICRERLPDVYRGII
QCGHVFCFVCIHKWVKKQQSSCPACRAEVRHIKKTLSMAEIEEKNRNWKP
PTKAQMKRDKRKSAIGKRPVRPYIIAKTIRVRFKQSEEQARQNRMAPHPQ
AAGGFLHDQAAEA
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mRNA from alignment at P-littoralis_Contig159:61101..63481+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig159.14.1 ID=mRNA_P-littoralis_Contig159.14.1|Name=mRNA_P-littoralis_Contig159.14.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=2381bp|location=Sequence derived from alignment at P-littoralis_Contig159:61101..63481+ (Pylaiella littoralis U1_48)
ACAGCAACAGCGACAGCGACAGCGACAGCGACAAGTGTCGTCGTGAACGT
GAGCCGCCCGAGCCCAAAAGAGGCAGACAATGGGATCGATGAGGGAGAAC
ACTGTCTGATATGCCGGGAACGACTTCCCGACGTGTACAGGGGTATCATC
CAATGTGTGAGTATGGCACAGGGCGGCAGGATTGTGGCCGTGGCCGGTGG
TAAGTTTGTATTCGCTTCTTTTTGGTCCTGTTCCTTTGTGAACCCCATGA
GATTTTGCATTCTCATGATTTATCGGGAATATAAAGTTGGAATTTACATA
TGAAGTTGATGACGAAGACCACCGCTGCTACGTGGAAATAGTGCAGTATG
TGAGTACGGAGATCAGCGAATTTCAGTGCTCCCTTCGAAGTATGTAAACC
TTCACGCCAAAGACCACGTCCTGACTGTACTTACCCTGCGCTGCCTGCTC
TTCTAGGTGATTTTTTCCCTCGGTGGCCTCCTTGTTACGACAGGTTCGTC
ACCTGTTTGTTTTCGTTCTCTCGTGCATCCCAATTGCTGGCGTGTAACGA
GGCAGAAGAAGATACCGGAATCCCCGCCTTGATACAGCAGCAACGTGGTT
GCGAGCCCTAACCCTGTCCGGATGTTATTTTTCTACAGTATTTGTCCATT
TTGATTATCATCGCTCGCATTTTGTTGTTGTCGCGTGTCTCATTCCAGGG
GCACGTGTTCTGCTTCGTGTGCATCCACAAGTGGGTCAAGAAGCAGCAAA
GCAGTTGTCCCGCTTGCCGGGCTGAGGTACGCCACATCAAGAAGACGCTC
AGCATGGCAGAGATCGAAGAGAAGAACGTGGGTTATGGCATGTCTTCTGT
TGTGCAGTCGTTATGTAGGTTCTGTAAGACGTGTTGTGGTTGGTGTTGTC
GTTGTTGTTGTTGTAGGTTGTGGTAGCGGCGGTGTTTTTGTTGTTGACAG
GTTGTCGTCGGTCATATGGTCTCGTTGTCGTCGTTACTTGGAGTCATCGT
TACTTGCACGGTACAGTTGTTTGAGTCTGCCAAGTCAAACGACACCATCG
ACATGGCAGTGCGCGATGAAAACAACTAGTTTCACCCGTGTGTCCAGTTT
GTGCCCGGACGATTAATACTCCGTACTTTATTTTTAGATTGATATTTGCA
ATACTAAAGTACCACAGGTAAACCTGGTTAAAACCTGTGATGTTGGGTTT
TCCCTTCTTTCTTGCGACAGCGTAACTGGAAGCCCCCAACGAAGGCCCAG
ATGAAGAGAGACAAGCGCAAATCTGCGATCGGCAAACGTCCGGTGGTGAG
TGAGTCAAGGCACTAAGAAGTTGAAGTGCCGAAGGAATTACTATAGCTCT
TACTTCACTTGGGCTGGTGTCAACGTGTCAACTCCGATAAAGCTGATGGT
GAACTAGCCCTGGGTAGGTGCTAGCGATCCTACTGCTGTTCTGGGTGCCC
ATTTCTCTCGATAACCCGGCGCTTGTACCGCTAGTCGCGTGAACAAATCG
AAAATATGTACAAGTACCTACGTCACAACCGATCGCGTTCAAGGTACTGA
TTTCAGGTGTGTACTCGAACATGCAAGCATGCTTCGAAATTTGCGACTAC
TGGCCTAAGACGGCACCGCTGTGACGGTATCAAGATCCCCTCCCTTCGCC
ACCTTTCGTCTGCGGTCTATCGCTCTGCTGCTGCCGATGCACTTGACAAA
AATCGAATGCAGAGGCCCTACATCATAGCCAAGACAATTCGCGTTCGCTT
CAAGCAGAGCGAAGAACAGGCCAGGCAGAACCGCATGGCGCCTCATCCGC
AGGTGGGGAATAAACAACTTTCCCGGCAAGGTATCCCACGAGGAATTCTC
AGGGGATTTTTGCCAAAAATTTGAAATGCTTTTTCTCAAAAGGTGTTTCA
GGGATCCCTAGAAACATTTACGCTGAATGCTCTCATCAATGGACCCGCTC
AGGCACATGTACAAGGGAGGTTCTCCTGCAGGTCCAGGGTACCTGCAGGT
CCAGGGTAATCCTGCCTTGTACTTGGAATAAACCCACAAGCGACTAGGCT
TTTAACCGCGCGGACCCTGCTTGATGTGATAGGAGGAAATGTTGTGTGTT
GTAACGCTGAAGACGACACGGAGTACGGAGTGACAAAAATGTGGCGTTTA
TTCTGTCGCTTGGGCGCCAGCAGGTCAAGCCAGCGTGTCATATGATAGCA
AGGAGAACAAGCCCCCCAGCTAAGCAGCACCATCATGCATCCTCGTGATA
CGGTAGCCGATGAACGGACAAACCATGTGACGTGGAACAAGCTGGACGCA
GACACTCTAAAAAAACACCTAACGCCTGCTCGGAACACAGGCGGCCGGTG
GGTTCTTGCACGACCAAGCGGCGGAAGCGGC
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Coding sequence (CDS) from alignment at P-littoralis_Contig159:61101..63481+

>mRNA_P-littoralis_Contig159.14.1 ID=mRNA_P-littoralis_Contig159.14.1|Name=mRNA_P-littoralis_Contig159.14.1|organism=Pylaiella littoralis U1_48|type=CDS|length=489bp|location=Sequence derived from alignment at P-littoralis_Contig159:61101..63481+ (Pylaiella littoralis U1_48)
ACAGCAACAGCGACAGCGACAGCGACAGCGACAAGTGTCGTCGTGAACGT
GAGCCGCCCGAGCCCAAAAGAGGCAGACAATGGGATCGATGAGGGAGAAC
ACTGTCTGATATGCCGGGAACGACTTCCCGACGTGTACAGGGGTATCATC
CAATGTGGGCACGTGTTCTGCTTCGTGTGCATCCACAAGTGGGTCAAGAA
GCAGCAAAGCAGTTGTCCCGCTTGCCGGGCTGAGGTACGCCACATCAAGA
AGACGCTCAGCATGGCAGAGATCGAAGAGAAGAACCGTAACTGGAAGCCC
CCAACGAAGGCCCAGATGAAGAGAGACAAGCGCAAATCTGCGATCGGCAA
ACGTCCGGTGAGGCCCTACATCATAGCCAAGACAATTCGCGTTCGCTTCA
AGCAGAGCGAAGAACAGGCCAGGCAGAACCGCATGGCGCCTCATCCGCAG
GCGGCCGGTGGGTTCTTGCACGACCAAGCGGCGGAAGCG
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