mRNA_P-littoralis_Contig159.100.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig159.100.1
Unique NamemRNA_P-littoralis_Contig159.100.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
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BLAST of mRNA_P-littoralis_Contig159.100.1 vs. uniprot
Match: A0A6H5J557_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J557_9PHAE)

HSP 1 Score: 52.0 bits (123), Expect = 1.910e-5
Identity = 21/38 (55.26%), Postives = 28/38 (73.68%), Query Frame = 1 
Query:   28 FGDRPDDWTNPFSLAFVLFGRPAGEQEDVDLKCKVSGG 141
            +G +P+ W +P SL F +FGRPAG  EDVDLK K++ G
Sbjct:  283 YGPKPEHWLHPASLVFAIFGRPAGTNEDVDLKLKMTSG 320
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig159.100.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5J557_9PHAE1.910e-555.26Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig159contigP-littoralis_Contig159:473575..473897 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size325
Hectar predicted targeting categoryother localisation
Exons1
Cds size321
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789758.351187-CDS-P-littoralis_Contig159:473574..4738951680789758.351187-CDS-P-littoralis_Contig159:473574..473895Pylaiella littoralis U1_48CDSP-littoralis_Contig159 473575..473895 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig159.100.1prot_P-littoralis_Contig159.100.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig159 473575..473895 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig159.100.1

>prot_P-littoralis_Contig159.100.1 ID=prot_P-littoralis_Contig159.100.1|Name=mRNA_P-littoralis_Contig159.100.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=107bp
AQRVRDVAKFGDRPDDWTNPFSLAFVLFGRPAGEQEDVDLKCKVSGGGKT
GAAATAAVEPGGAGVGSAAKAHGLGRHDLANLDGAGGGAGGQQSRAAVKK
ERYVANS
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mRNA from alignment at P-littoralis_Contig159:473575..473897+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig159.100.1 ID=mRNA_P-littoralis_Contig159.100.1|Name=mRNA_P-littoralis_Contig159.100.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=323bp|location=Sequence derived from alignment at P-littoralis_Contig159:473575..473897+ (Pylaiella littoralis U1_48)
GCTCAACGTGTACGTGACGTGGCTAAATTCGGCGACAGGCCCGACGACTG
GACCAATCCCTTCAGCCTTGCCTTCGTGTTGTTCGGGCGGCCCGCCGGCG
AGCAAGAGGATGTGGACCTCAAATGCAAGGTGTCTGGAGGCGGCAAGACG
GGCGCGGCAGCAACTGCCGCGGTCGAACCGGGGGGTGCGGGCGTTGGTTC
TGCGGCGAAAGCACATGGGCTGGGCAGGCACGACCTGGCCAACCTGGATG
GGGCCGGGGGCGGGGCCGGCGGTCAGCAAAGTCGCGCGGCAGTTAAGAAG
GAGAGGTATGTAGCGAACTCAGA
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Coding sequence (CDS) from alignment at P-littoralis_Contig159:473575..473897+

>mRNA_P-littoralis_Contig159.100.1 ID=mRNA_P-littoralis_Contig159.100.1|Name=mRNA_P-littoralis_Contig159.100.1|organism=Pylaiella littoralis U1_48|type=CDS|length=321bp|location=Sequence derived from alignment at P-littoralis_Contig159:473575..473897+ (Pylaiella littoralis U1_48)
GCTCAACGTGTACGTGACGTGGCTAAATTCGGCGACAGGCCCGACGACTG
GACCAATCCCTTCAGCCTTGCCTTCGTGTTGTTCGGGCGGCCCGCCGGCG
AGCAAGAGGATGTGGACCTCAAATGCAAGGTGTCTGGAGGCGGCAAGACG
GGCGCGGCAGCAACTGCCGCGGTCGAACCGGGGGGTGCGGGCGTTGGTTC
TGCGGCGAAAGCACATGGGCTGGGCAGGCACGACCTGGCCAACCTGGATG
GGGCCGGGGGCGGGGCCGGCGGTCAGCAAAGTCGCGCGGCAGTTAAGAAG
GAGAGGTATGTAGCGAACTCA
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