mRNA_P-littoralis_Contig159.85.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig159.85.1
Unique NamemRNA_P-littoralis_Contig159.85.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig159.85.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig159contigP-littoralis_Contig159:362515..362948 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size434
Hectar predicted targeting categoryother localisation
Exons1
Cds size345
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789758.2766945-UTR-P-littoralis_Contig159:362514..3626031680789758.2766945-UTR-P-littoralis_Contig159:362514..362603Pylaiella littoralis U1_48UTRP-littoralis_Contig159 362515..362603 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789758.2890728-CDS-P-littoralis_Contig159:362603..3629481680789758.2890728-CDS-P-littoralis_Contig159:362603..362948Pylaiella littoralis U1_48CDSP-littoralis_Contig159 362604..362948 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig159.85.1prot_P-littoralis_Contig159.85.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig159 362604..362948 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig159.85.1

>prot_P-littoralis_Contig159.85.1 ID=prot_P-littoralis_Contig159.85.1|Name=mRNA_P-littoralis_Contig159.85.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=115bp
MKYTVLEAQQRIAQRRHRGSTKNYIQQYLATLVSLPLKRAATTTAELHPH
WGYSSGTLLARQRYICFVSHERSLPCSIYWNRLSAPNLILWFLASTHDCW
IRVVGDLAGTEPENT
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mRNA from alignment at P-littoralis_Contig159:362515..362948+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig159.85.1 ID=mRNA_P-littoralis_Contig159.85.1|Name=mRNA_P-littoralis_Contig159.85.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=434bp|location=Sequence derived from alignment at P-littoralis_Contig159:362515..362948+ (Pylaiella littoralis U1_48)
TCAGCAGGTCAAGGATGGACTGCTCGGAGGGTCTGGGAGGTTTCACCAGG
TACTGCCATGAAACCCCACAGGGTGCAGCCTAAGAGTGAATGAAGTATAC
AGTGTTGGAGGCGCAACAAAGGATTGCACAAAGAAGGCATCGTGGTTCTA
CAAAAAATTACATACAGCAGTACCTGGCAACACTCGTTTCGCTGCCTCTG
AAGAGAGCAGCTACTACTACTGCGGAACTGCACCCACACTGGGGATACTC
GTCGGGTACTTTGCTCGCACGTCAACGTTACATTTGTTTTGTCTCTCATG
AACGTTCGCTGCCTTGCTCGATATACTGGAATCGGCTGTCCGCACCCAAC
CTCATCTTGTGGTTCCTGGCATCAACACACGATTGTTGGATTCGGGTTGT
TGGTGATTTGGCAGGCACTGAGCCAGAGAATACC
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Coding sequence (CDS) from alignment at P-littoralis_Contig159:362515..362948+

>mRNA_P-littoralis_Contig159.85.1 ID=mRNA_P-littoralis_Contig159.85.1|Name=mRNA_P-littoralis_Contig159.85.1|organism=Pylaiella littoralis U1_48|type=CDS|length=345bp|location=Sequence derived from alignment at P-littoralis_Contig159:362515..362948+ (Pylaiella littoralis U1_48)
ATGAAGTATACAGTGTTGGAGGCGCAACAAAGGATTGCACAAAGAAGGCA
TCGTGGTTCTACAAAAAATTACATACAGCAGTACCTGGCAACACTCGTTT
CGCTGCCTCTGAAGAGAGCAGCTACTACTACTGCGGAACTGCACCCACAC
TGGGGATACTCGTCGGGTACTTTGCTCGCACGTCAACGTTACATTTGTTT
TGTCTCTCATGAACGTTCGCTGCCTTGCTCGATATACTGGAATCGGCTGT
CCGCACCCAACCTCATCTTGTGGTTCCTGGCATCAACACACGATTGTTGG
ATTCGGGTTGTTGGTGATTTGGCAGGCACTGAGCCAGAGAATACC
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