mRNA_P-littoralis_Contig159.17.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig159.17.1
Unique NamemRNA_P-littoralis_Contig159.17.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig159.17.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig159contigP-littoralis_Contig159:80480..81360 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size543
Hectar predicted targeting categoryother localisation
Exons2
Cds size306
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789757.8141947-UTR-P-littoralis_Contig159:80479..804881680789757.8141947-UTR-P-littoralis_Contig159:80479..80488Pylaiella littoralis U1_48UTRP-littoralis_Contig159 80480..80488 -
1680789757.8553216-UTR-P-littoralis_Contig159:81132..813601680789757.8553216-UTR-P-littoralis_Contig159:81132..81360Pylaiella littoralis U1_48UTRP-littoralis_Contig159 81133..81360 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789757.8294022-CDS-P-littoralis_Contig159:80488..805361680789757.8294022-CDS-P-littoralis_Contig159:80488..80536Pylaiella littoralis U1_48CDSP-littoralis_Contig159 80489..80536 -
1680789757.8450487-CDS-P-littoralis_Contig159:80874..811321680789757.8450487-CDS-P-littoralis_Contig159:80874..81132Pylaiella littoralis U1_48CDSP-littoralis_Contig159 80875..81132 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig159.17.1prot_P-littoralis_Contig159.17.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig159 80489..81132 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig159.17.1

>prot_P-littoralis_Contig159.17.1 ID=prot_P-littoralis_Contig159.17.1|Name=mRNA_P-littoralis_Contig159.17.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=102bp
MQAVPLPSPPLPPPSVPLHSRPMHSYHMDGVCIRFSIPSHNWCPSCLPSW
TSNQYTEAYPTTAPARLTLVTPPPNVSLRTDDYYYQLPHRRALDTLPNAQ
D*
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mRNA from alignment at P-littoralis_Contig159:80480..81360-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig159.17.1 ID=mRNA_P-littoralis_Contig159.17.1|Name=mRNA_P-littoralis_Contig159.17.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=881bp|location=Sequence derived from alignment at P-littoralis_Contig159:80480..81360- (Pylaiella littoralis U1_48)
CTCGCGTCGGCACACGGGTCTCCCGTGTACGTGGAGTAGATCGACTTGCG
GGAATAATCGCAGCAGAGGTGTTGCGCTGTTGGCTCTCTTTGCCGCGCAT
GTGTGTGTAAGGTAAGCACGATCAGGGTGAGCTTTTCGTCCCACCACAAC
CTCCTCGGGACTTTTTATTTTGCGTATAATAGGTATGATAGACATCGGTA
GCGTCGGGAAGAATCATTCCAATCGCGCATGCAAGCTGTTCCGTTACCAT
CCCCACCTCTCCCTCCTCCGAGCGTCCCGCTCCACTCTCGTCCCATGCAT
TCGTATCATATGGATGGTGTTTGCATTCGATTCTCCATACCGTCGCACAA
CTGGTGCCCAAGCTGTCTTCCGTCGTGGACATCAAATCAATACACCGAAG
CGTACCCAACAACAGCTCCAGCACGGTTAACCTTGGTGACCCCGCCACCC
AATGTCTCCCTGCGGACTGACGACTATTATTATCAAGTAAGTGTTGCTGC
TTGATTCCCACAACCTTCGGCGGCCGGCTTGGCTTTGTTCTCTTCCCACG
GGCGACTGTTTTTTTGTTTTTTTGTTCGGGATGTATGTGGGTGTGCAAGA
GCCCGCACGCAGTCAGTGTTTCGCAATAAGTAACCGGCGTTGACGTACTT
TCGGAGACAGTAAATAACAACAACTACACCAACAACAGCAACGATCAACA
AGCAACAGCAGACACCATCACCATCGCCACCACCGCCACCGCCAACACCA
CCATCACCACCACCACCACTACCATCACTACCATCACCAGTAGAACATCT
TGTTCCCTTGCCGCCTCGCGACAGCTGCCACATCGTAGAGCGCTGGATAC
ACTGCCCAACGCGCAAGACTGAGTATGCCTG
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Coding sequence (CDS) from alignment at P-littoralis_Contig159:80480..81360-

>mRNA_P-littoralis_Contig159.17.1 ID=mRNA_P-littoralis_Contig159.17.1|Name=mRNA_P-littoralis_Contig159.17.1|organism=Pylaiella littoralis U1_48|type=CDS|length=306bp|location=Sequence derived from alignment at P-littoralis_Contig159:80480..81360- (Pylaiella littoralis U1_48)
ATGCAAGCTGTTCCGTTACCATCCCCACCTCTCCCTCCTCCGAGCGTCCC
GCTCCACTCTCGTCCCATGCATTCGTATCATATGGATGGTGTTTGCATTC
GATTCTCCATACCGTCGCACAACTGGTGCCCAAGCTGTCTTCCGTCGTGG
ACATCAAATCAATACACCGAAGCGTACCCAACAACAGCTCCAGCACGGTT
AACCTTGGTGACCCCGCCACCCAATGTCTCCCTGCGGACTGACGACTATT
ATTATCAACTGCCACATCGTAGAGCGCTGGATACACTGCCCAACGCGCAA
GACTGA
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