mRNA_P-littoralis_Contig1582.4.1 (mRNA) Pylaiella littoralis U1_48
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Overview
Homology
BLAST of mRNA_P-littoralis_Contig1582.4.1 vs. uniprot
Match: Q9G922_OCHDN (NADH-ubiquinone oxidoreductase chain 4 n=1 Tax=Ochromonas danica TaxID=2986 RepID=Q9G922_OCHDN) HSP 1 Score: 205 bits (521), Expect = 1.450e-57 Identity = 150/338 (44.38%), Postives = 190/338 (56.21%), Query Frame = 3
Query: 45 IYLFYCINLFINFLCILFI*NDKNFKEYALTLIIIELFLFIIFSVLXXXXXXXXFEAILIPMYLLIGV*GSRERKIRAVYLFFFILFXXXXXXXXQYYTF---ILLLEP*I*NIY*HLILVLLIKNIMIMLFLIFCL*NTNVP-----FSYLIARSAC*STYCRFGFTCWY---FIKTWCIW-------FLKI*YYFFIP*XXXXXXXXXXXXIYYRCFICFNE----------CY*TN*FKRIIAYSSVAHMNLVTLGIFSFNVIGIEGAILQSISHGFVSGGMFLLIGVLYNRYHSRFLYYYGGLVQMMPIYAIFFLIFTFANIAIPGTSSFVGEF 974
I+ F+ +L I FLC+L++ N+ N K+Y + LI IEL L IIFSVL FEAILIPM+++IGV GSRERK+RAVYLFFF YT +LLL +L + K L + C T F++ ++ + S F F W ++ I LK+ Y FI ++Y FI F KRIIAYSS+AHMNLVTLGIF+FN IG+EG+I+QS+SHGFV+GGMF LIG+LY+RYHSRFLYYYGGL MP+Y+IFFL+ T ANIA+PGTSSF GEF
Sbjct: 83 IFFFFLTSLLI-FLCVLYVLNENNLKQYLVLLISIELILLIIFSVLDLMLFYIFFEAILIPMFIIIGVYGSRERKVRAVYLFFF-------------YTLCGSLLLLVG---------VLYIYSKIGSFNLEYLMCYQFTKTEELLLWFAFFLSFA---SKIPMFPFHIWLPEAHVEAPTIGSVLLAGVLLKLGVYGFIR---FSLTLFPYASLFYSPFIYFLSLISIIYASLTALRQTDLKRIIAYSSIAHMNLVTLGIFAFNNIGLEGSIIQSLSHGFVAGGMFFLIGILYSRYHSRFLYYYGGLAHTMPVYSIFFLLLTIANIALPGTSSFTGEF 391
BLAST of mRNA_P-littoralis_Contig1582.4.1 vs. uniprot
Match: A0A7T6UZN4_LITUN (NADH-ubiquinone oxidoreductase chain 4 n=1 Tax=Lithodesmium undulatum TaxID=59812 RepID=A0A7T6UZN4_LITUN) HSP 1 Score: 179 bits (453), Expect = 1.410e-47 Identity = 124/306 (40.52%), Postives = 165/306 (53.92%), Query Frame = 3
Query: 108 DKNFKEYALTLIIIELFLFIIFSVLXXXXXXXXFEAILIPMYLLIGV*GSRERKIRAVYLFFF------------ILFXXXXXXXXQY---YTFILLLEP*I*NIY*HLILVLLIKNIMIMLFLIFCL*NTNVPFSYLIARSAC*STYCRFGFTCWYF--IKTWCIWFLKI*YYFFIP*XXXXXXXXXXXXIYYRCFICFNECY*TN*FKRIIAYSSVAHMNLVTLGIFSFNVIGIEGAILQSISHGFVSGGMFLLIGVLYNRYHSRFLYYYGGLVQMMPIYAIFFLIFTFANIAIPGTSSFVGEF 974
KN KE+ L+ +I+E FL I+FSVL FE++LIPM+L+IG+ GSRERKIRA Y FF IL+ Y TF + + ++ + K M+ + L + P + + + +GF + F C +F Y I Y F + FKRIIAY+SVAHMNLV +G+FSFN+IGIEGAILQS+SHGFV+ +FL+IG++Y R+H+R + YYGGLV +MPIY I FL FT ANI +PGTSSFVGEF
Sbjct: 114 SKNLKEFFLSFLIMEFFLIIVFSVLDLLLFYIFFESVLIPMFLIIGIWGSRERKIRAAYFFFLYTLLGSLLMLLTILYIYYQVGTTDYEILLTFSFSTDEQL-LLWLAFFISFAAKIPMVPVHLWLPEAHVEAPTAGSVILAGILLKLGTYGFIRFSFPLFPQACFYFAPFVY------------SVSVIGIIYTSFTAIRQ----TDFKRIIAYTSVAHMNLVMVGLFSFNIIGIEGAILQSLSHGFVASALFLIIGIVYERHHTRMVKYYGGLVHIMPIYIIIFLFFTMANIGLPGTSSFVGEF 402
BLAST of mRNA_P-littoralis_Contig1582.4.1 vs. uniprot
Match: A0A7U0KSG6_9STRA (NADH-ubiquinone oxidoreductase chain 4 n=1 Tax=Aureoumbra lagunensis TaxID=44058 RepID=A0A7U0KSG6_9STRA) HSP 1 Score: 176 bits (447), Expect = 8.720e-47 Identity = 123/305 (40.33%), Postives = 167/305 (54.75%), Query Frame = 3
Query: 87 CILFI*NDKNF-KEYALTLIIIELFLFIIFSVLXXXXXXXXFEAILIPMYLLIGV*GSRERKIRAVYLFF-FILFXXXXXXXXQYYTFILLLEP*I*NIY*HLILVLLIKNIMIMLFLIFCL*NTNVPFSYLIARSAC*STYCRFGFTCWYFIKTWCIWFLKI*Y-------YFFIP*XXXXXXXXXXXXIYYRCFICFNECY*TN*FKRIIAYSSVAHMNLVTLGIFSFNVIGIEGAILQSISHGFVSGGMFLLIGVLYNRYHSRFLYYYGGLVQMMPIYAIFFLIFTFANIAIPGTSSFVGEF 974
C+L N + F KEY + +I+E+FL ++F V FE++LIPMYL+IG+ GSR+RKIRA YLFF + LF Y + ++ K + + F F P + + + +K F+K YFF P I Y F + + FKRIIAY+S+AHMNLV +GIFSFN+IG+EGAI+QSISHGFVS +FL+IG++Y+RYH+R + Y+GG+ Q MPI+ IFFLIF+ ANIA+PGTSSFVGEF
Sbjct: 94 CLLASWNIELFLKEYFIAFLILEIFLILVFCVSDVFLFYIFFESVLIPMYLIIGIWGSRQRKIRAAYLFFLYTLFGSLVMLSAIGYLYTKTGTTDYESLLNFQFAEFEQKILWLAFFFSFASKIPMFPVHLWLPEAHVEAPTAGSVVLAGILLKLGVFGFVKFSIPLFSKASYFFTP----IVLTFSVIGIIYGSFTAIRQ----SDFKRIIAYTSIAHMNLVVMGIFSFNLIGLEGAIIQSISHGFVSSALFLIIGIVYDRYHTRTVRYFGGIAQTMPIFVIFFLIFSMANIALPGTSSFVGEF 390
BLAST of mRNA_P-littoralis_Contig1582.4.1 vs. uniprot
Match: A0A8A6KJY2_9STRA (NADH-ubiquinone oxidoreductase chain 4 n=1 Tax=Rhizosolenia setigera TaxID=3005 RepID=A0A8A6KJY2_9STRA) HSP 1 Score: 176 bits (445), Expect = 2.000e-46 Identity = 126/312 (40.38%), Postives = 163/312 (52.24%), Query Frame = 3
Query: 81 FLCILFI*ND--KNFKEYALTLIIIELFLFIIFSVLXXXXXXXXFEAILIPMYLLIGV*GSRERKIRAVYLFFFILFXXXXXXXXQYYTFILLLEP*I*NIY*HLILVLLI-----KNIMIMLFLIFCL*NTNVPFSYLIARSAC*STYCRFGFTCWYFIKTWCIWFLKI*Y-------YFFIP*XXXXXXXXXXXXIYYRCFICFNECY*TN*FKRIIAYSSVAHMNLVTLGIFSFNVIGIEGAILQSISHGFVSGGMFLLIGVLYNRYHSRFLYYYGGLVQMMPIYAIFFLIFTFANIAIPGTSSFVGEF 974
FLC+L N N KEY L +I+ELFL +FS++ FE++LIPMYL+IG+ GSRERKIRA Y FF IL + + +IL K + + F F +P + + + +K F++ +FF P I Y F + FKRIIAY+SVAHMNLV LGIFSFNVIGIEG++LQS+SHGFV+ +FL+IGV+Y R H+R + YYGGLV +MPIY FL FT ANI +PGTSSF+GEF
Sbjct: 104 FLCLLNSWNSVQTNVKEYLLCFLIMELFLLCVFSIIDVFLFYVFFESVLIPMYLIIGIWGSRERKIRANYFFFLYTLLGSILMLLS----ILYIYSSVGTTNYEIILTTFFTETEQKILWLTFFASFATKVPMLPMHIWLPEAHVEAPTAGSVILAGVLLKLGTYGFIRFSIPLFPKASFFFSP----LVYAVATIGIIYTSFTAIRQ----TDFKRIIAYTSVAHMNLVVLGIFSFNVIGIEGSLLQSLSHGFVASSLFLIIGVVYERTHTRMVKYYGGLVHIMPIYIAIFLFFTMANIGLPGTSSFIGEF 403
BLAST of mRNA_P-littoralis_Contig1582.4.1 vs. uniprot
Match: A0A7T0GFN9_9STRA (NADH-ubiquinone oxidoreductase chain 4 n=1 Tax=Eucampia zodiacus TaxID=444606 RepID=A0A7T0GFN9_9STRA) HSP 1 Score: 172 bits (437), Expect = 2.580e-45 Identity = 124/316 (39.24%), Postives = 167/316 (52.85%), Query Frame = 3
Query: 84 LCILFI*ND--KNFKEYALTLIIIELFLFIIFSVLXXXXXXXXFEAILIPMYLLIGV*GSRERKIRAVYLFFF------------ILFXXXXXXXXQYYTFILL----LEP*I*NIY*HLILVLLIKNIMIMLFLIFCL*NTNVPFSYLIARSAC*STYCRFGFTCWYF--IKTWCIWFLKI*YYFFIP*XXXXXXXXXXXXIYYRCFICFNECY*TN*FKRIIAYSSVAHMNLVTLGIFSFNVIGIEGAILQSISHGFVSGGMFLLIGVLYNRYHSRFLYYYGGLVQMMPIYAIFFLIFTFANIAIPGTSSFVGE 971
LC+L N N KEY ++ +++E FL +F +L FE++LIPMYL+IGV GSRERKIRA Y FF IL+ Y T + LE I ++ K M+ + L + P + + + +GF + F C +F Y + I Y F + FKRIIAY+SVAHMNLV +G+FSFN+IG+EGAILQS+SHGFV+ +FL+IGV+Y+R+H+R + YYGGL +MP+Y I FL FT ANI +PGTSSFVGE
Sbjct: 99 LCLLVSWNSIQNNLKEYLISFLVMEFFLIGVFCILDVLLFYIFFESVLIPMYLIIGVWGSRERKIRAAYFFFLYTLLGSVLMLLSILYIYYQAGTTDYETLLTFSFSELEQKI--MWCSFFASFATKVPMLPVHLWLPEAHVEAPTAGSVILAGVLLKLGTYGFIRFSFALFPNACFYFAPFVYAMSVA------------GIIYTSFTAIRQ----TDFKRIIAYTSVAHMNLVMVGMFSFNIIGLEGAILQSLSHGFVASALFLIIGVVYDRHHTRMVKYYGGLAHVMPVYIIIFLFFTMANIGLPGTSSFVGE 396
BLAST of mRNA_P-littoralis_Contig1582.4.1 vs. uniprot
Match: Q3S2A3_THAPS (NADH-ubiquinone oxidoreductase chain 4 n=9 Tax=Thalassiosirales TaxID=33847 RepID=Q3S2A3_THAPS) HSP 1 Score: 171 bits (434), Expect = 8.030e-45 Identity = 120/328 (36.59%), Postives = 164/328 (50.00%), Query Frame = 3
Query: 54 FYCINLFINFLCILFI*ND--KNFKEYALTLIIIELFLFIIFSVLXXXXXXXXFEAILIPMYLLIGV*GSRERKIRAVYLFFF------------ILFXXXXXXXXQYYTFILLLEP*I*NIY*HLILVLLIKNIMIMLFLIFCL*NTNVPFSYLIARSAC*STYCRFGFTCWYFIKTWCIWFLKI*Y-------YFFIP*XXXXXXXXXXXXIYYRCFICFNECY*TN*FKRIIAYSSVAHMNLVTLGIFSFNVIGIEGAILQSISHGFVSGGMFLLIGVLYNRYHSRFLYYYGGLVQMMPIYAIFFLIFTFANIAIPGTSSFVGEF 974
F + + FLCIL N N KE+ + +++E FL +FS+L FE++LIPMYL++G+ GSRERKIRA Y FF IL+ Y + + K + + F F VP + + + +K FL+ + ++F P I Y F + FKRIIAY+SVAHMNLV +G+FSFN IG+EGAILQS+SHGFV+ +FL+IGV+Y R+H+R + YYGGLV +MP+Y FL FT +NI +PGT SFVGEF
Sbjct: 94 FILLTTLLIFLCILISWNSVKTNIKEFLIAFLVMEFFLIGVFSILDLLLFYIYFESVLIPMYLIVGIWGSRERKIRAAYFFFLYTLLGSVLMLLSILYIYYQVGTTDYEVLLTFIFSKTEQ-----------KFLWLSFFGSFATKVPMVPVHLWLPEAHVEAPTAGSVILAGVLLKLGTYGFLRFSFPLFPEASFYFAP----IVYLLSVVGIVYTSFTAIRQ----TDFKRIIAYTSVAHMNLVMVGLFSFNTIGLEGAILQSLSHGFVASALFLIIGVVYERHHTRMVKYYGGLVHVMPLYTFIFLFFTMSNIGLPGTGSFVGEF 402
BLAST of mRNA_P-littoralis_Contig1582.4.1 vs. uniprot
Match: A0A2U9GIS8_9STRA (NADH-ubiquinone oxidoreductase chain 4 n=1 Tax=Psammoneis japonica TaxID=517775 RepID=A0A2U9GIS8_9STRA) HSP 1 Score: 171 bits (433), Expect = 1.040e-44 Identity = 117/308 (37.99%), Postives = 157/308 (50.97%), Query Frame = 3
Query: 108 DKNFKEYALTLIIIELFLFIIFSVLXXXXXXXXFEAILIPMYLLIGV*GSRERKIRAVYLFFF------------ILFXXXXXXXXQYYTFILLLEP*I*NIY*HLILVLLIKNIMIMLFLIFCL*NTNVPFSYLIARSAC*STYCRFGFTCWYFIKTWCIWFLKI*Y-------YFFIP*XXXXXXXXXXXXIYYRCFICFNECY*TN*FKRIIAYSSVAHMNLVTLGIFSFNVIGIEGAILQSISHGFVSGGMFLLIGVLYNRYHSRFLYYYGGLVQMMPIYAIFFLIFTFANIAIPGTSSFVGEF 974
N KEY L+ +I+E FL +F +L FE++LIPM+L++G+ GSRERKIRA Y FF IL+ Y + + K + + F F +P + + + +K F++ ++F P I Y F + FKRIIAY+S+AHMNLV LGIFSFNVIGIEGA+LQS+SHGFV+ +FL+IGV+Y+R+H+R + YYGGLV +MPIY FL FT ANI +PGTSSFVGEF
Sbjct: 113 QHNLKEYLLSFLIMEFFLIGVFCILDLLLFYIFFESVLIPMFLIVGIWGSRERKIRAAYFFFLYTLLGSVLMLLSILYVYYQVGTTDYEVLLTFSFSPVEQ-----------KLLWLTFFFSFASKVPMLPVHLWLPEAHVEAPTAGSVILAGVLLKLGTYGFIRFSLPLFPEACFYFSP----FVYSLSAIGIIYTSFTAIRQ----TDFKRIIAYTSIAHMNLVMLGIFSFNVIGIEGALLQSLSHGFVASALFLIIGVVYDRHHTRMVKYYGGLVHVMPIYIFIFLFFTMANIGLPGTSSFVGEF 401
BLAST of mRNA_P-littoralis_Contig1582.4.1 vs. uniprot
Match: A0A7T5BNT8_9STRA (NADH-ubiquinone oxidoreductase chain 4 n=1 Tax=Odontella regia TaxID=1335017 RepID=A0A7T5BNT8_9STRA) HSP 1 Score: 170 bits (430), Expect = 2.610e-44 Identity = 118/308 (38.31%), Postives = 162/308 (52.60%), Query Frame = 3
Query: 108 DKNFKEYALTLIIIELFLFIIFSVLXXXXXXXXFEAILIPMYLLIGV*GSRERKIRAVYLFFF------------ILFXXXXXXXXQYYTFILLLEP*I*NIY*HLILVLLIKNIMIMLFLIFCL*NTNVPFSYLIARSAC*STYCRFGFTCWYFIKTWCIWFLK-------I*YYFFIP*XXXXXXXXXXXXIYYRCFICFNECY*TN*FKRIIAYSSVAHMNLVTLGIFSFNVIGIEGAILQSISHGFVSGGMFLLIGVLYNRYHSRFLYYYGGLVQMMPIYAIFFLIFTFANIAIPGTSSFVGEF 974
+ KE+ L+ I++E FL +F +L FE++L+PM+L+IG+ GSRERKIRA Y FF IL+ Y +LL NI K + + LF F VP + + + +K F++ I ++F P + Y F + FKRIIAY+SVAHMNLV +GIFSF++IG+EGAILQSISHGFV+ +F++IGV+Y R+H+R + YY G+V +MP+YA FLIFT ANI +PGTSSFVGEF
Sbjct: 109 SSSLKEFLLSFILLEFFLIGVFCILDLLLFYIFFESVLVPMFLIIGIWGSRERKIRAAYFFFLYTLLGSVLMLLAILYIYYQVGTTDYE---ILLSVSFSNIEQ--------KMLWLALFASFAAKIPMVPVHLWLPEAHVEAPTAGSVILAGVLLKLGTYGFIRFSLPLFPIASFYFAP----IVYTIAAVGVVYTSFTAIRQ----TDFKRIIAYTSVAHMNLVMIGIFSFSIIGLEGAILQSISHGFVASALFIIIGVVYERHHTRMIKYYSGIVHIMPLYATIFLIFTMANIGLPGTSSFVGEF 397
BLAST of mRNA_P-littoralis_Contig1582.4.1 vs. uniprot
Match: A0A7T8JJN0_9STRA (NADH-ubiquinone oxidoreductase chain 4 n=1 Tax=Coscinodiscus wailesii TaxID=671091 RepID=A0A7T8JJN0_9STRA) HSP 1 Score: 170 bits (430), Expect = 2.650e-44 Identity = 123/332 (37.05%), Postives = 165/332 (49.70%), Query Frame = 3
Query: 54 FYCINLFINFLCILFI*ND--KNFKEYALTLIIIELFLFIIFSVLXXXXXXXXFEAILIPMYLLIGV*GSRERKIRAVYLFFF------------ILFXXXXXXXXQYYTFILL----LEP*I*NIY*HLILVLLIKNIMIMLFLIFCL*NTNVPFSYLIARSAC*STYCRFGFTCWYFIKTWCIWFLKI*Y-------YFFIP*XXXXXXXXXXXXIYYRCFICFNECY*TN*FKRIIAYSSVAHMNLVTLGIFSFNVIGIEGAILQSISHGFVSGGMFLLIGVLYNRYHSRFLYYYGGLVQMMPIYAIFFLIFTFANIAIPGTSSFVGEF 974
F + + FLCIL N N KEY + +++E FL +F+ L FE++LIPM+L+IG+ GSRERKIRA Y FF IL+ Y I + LE K + F F +P + + + +K L+ + ++F P IY C FKRIIAY+SVAHMNLV +G+FSFN IG+EGAILQSISHGFV+ +F++IG++Y RYH+R + YYGGLV +MP+Y+I FL+FT ANI +PGT SFVGEF
Sbjct: 90 FILLTTLLTFLCILISWNSITHNLKEYLVFFLLMEFFLIGVFTTLDLLLFYIFFESVLIPMFLIIGIWGSRERKIRAAYFFFLYTLLGSVLMLLGILYIYYQTGTTDYEILISVNLTELEQ---------------KFLWFTFFASFATKVPMLPMHIWLPEAHVEAPTSGSVILAGVLLKLGTYGILRFLFPLFPEANFYFTP---LVYSLAAVGIIYTSCTAIRQTD-----FKRIIAYTSVAHMNLVIIGLFSFNTIGLEGAILQSISHGFVASALFIIIGIVYERYHTRMVKYYGGLVHIMPLYSIIFLLFTMANIGLPGTGSFVGEF 398
BLAST of mRNA_P-littoralis_Contig1582.4.1 vs. uniprot
Match: Q9MGA9_9STRA (NADH-ubiquinone oxidoreductase chain 4 n=1 Tax=Synura synuroidea TaxID=47573 RepID=Q9MGA9_9STRA) HSP 1 Score: 168 bits (425), Expect = 1.170e-43 Identity = 79/97 (81.44%), Postives = 90/97 (92.78%), Query Frame = 3
Query: 684 KRIIAYSSVAHMNLVTLGIFSFNVIGIEGAILQSISHGFVSGGMFLLIGVLYNRYHSRFLYYYGGLVQMMPIYAIFFLIFTFANIAIPGTSSFVGEF 974
KRIIAYSS+AHMNLV LGIFSFN+IG+EG+ILQS+SHGFVSGGMFLL+G+LY+RYHSR LYYYGGLV +MP+Y+ FFL FT ANIA PGTSSFVGEF
Sbjct: 295 KRIIAYSSIAHMNLVVLGIFSFNIIGLEGSILQSLSHGFVSGGMFLLVGILYDRYHSRLLYYYGGLVHVMPLYSFFFLAFTLANIATPGTSSFVGEF 391 The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig1582.4.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_P-littoralis_Contig1582.4.1 >prot_P-littoralis_Contig1582.4.1 ID=prot_P-littoralis_Contig1582.4.1|Name=mRNA_P-littoralis_Contig1582.4.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=87bp MNLVTLGIFSFNVIGIEGAILQSISHGFVSGGMFLLIGVLYNRYHSRFLYback to top mRNA from alignment at P-littoralis_Contig1582:3123..4356+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_P-littoralis_Contig1582.4.1 ID=mRNA_P-littoralis_Contig1582.4.1|Name=mRNA_P-littoralis_Contig1582.4.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=1234bp|location=Sequence derived from alignment at P-littoralis_Contig1582:3123..4356+ (Pylaiella littoralis U1_48)back to top Coding sequence (CDS) from alignment at P-littoralis_Contig1582:3123..4356+ >mRNA_P-littoralis_Contig1582.4.1 ID=mRNA_P-littoralis_Contig1582.4.1|Name=mRNA_P-littoralis_Contig1582.4.1|organism=Pylaiella littoralis U1_48|type=CDS|length=261bp|location=Sequence derived from alignment at P-littoralis_Contig1582:3123..4356+ (Pylaiella littoralis U1_48)back to top |