mRNA_P-littoralis_Contig1582.4.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig1582.4.1
Unique NamemRNA_P-littoralis_Contig1582.4.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
BLAST of mRNA_P-littoralis_Contig1582.4.1 vs. uniprot
Match: Q9G922_OCHDN (NADH-ubiquinone oxidoreductase chain 4 n=1 Tax=Ochromonas danica TaxID=2986 RepID=Q9G922_OCHDN)

HSP 1 Score: 205 bits (521), Expect = 1.450e-57
Identity = 150/338 (44.38%), Postives = 190/338 (56.21%), Query Frame = 3
Query:   45 IYLFYCINLFINFLCILFI*NDKNFKEYALTLIIIELFLFIIFSVLXXXXXXXXFEAILIPMYLLIGV*GSRERKIRAVYLFFFILFXXXXXXXXQYYTF---ILLLEP*I*NIY*HLILVLLIKNIMIMLFLIFCL*NTNVP-----FSYLIARSAC*STYCRFGFTCWY---FIKTWCIW-------FLKI*YYFFIP*XXXXXXXXXXXXIYYRCFICFNE----------CY*TN*FKRIIAYSSVAHMNLVTLGIFSFNVIGIEGAILQSISHGFVSGGMFLLIGVLYNRYHSRFLYYYGGLVQMMPIYAIFFLIFTFANIAIPGTSSFVGEF 974
            I+ F+  +L I FLC+L++ N+ N K+Y + LI IEL L IIFSVL        FEAILIPM+++IGV GSRERK+RAVYLFFF             YT    +LLL           +L +  K     L  + C   T        F++ ++ +   S    F F  W     ++   I         LK+  Y FI              ++Y  FI F                   KRIIAYSS+AHMNLVTLGIF+FN IG+EG+I+QS+SHGFV+GGMF LIG+LY+RYHSRFLYYYGGL   MP+Y+IFFL+ T ANIA+PGTSSF GEF
Sbjct:   83 IFFFFLTSLLI-FLCVLYVLNENNLKQYLVLLISIELILLIIFSVLDLMLFYIFFEAILIPMFIIIGVYGSRERKVRAVYLFFF-------------YTLCGSLLLLVG---------VLYIYSKIGSFNLEYLMCYQFTKTEELLLWFAFFLSFA---SKIPMFPFHIWLPEAHVEAPTIGSVLLAGVLLKLGVYGFIR---FSLTLFPYASLFYSPFIYFLSLISIIYASLTALRQTDLKRIIAYSSIAHMNLVTLGIFAFNNIGLEGSIIQSLSHGFVAGGMFFLIGILYSRYHSRFLYYYGGLAHTMPVYSIFFLLLTIANIALPGTSSFTGEF 391          
BLAST of mRNA_P-littoralis_Contig1582.4.1 vs. uniprot
Match: A0A7T6UZN4_LITUN (NADH-ubiquinone oxidoreductase chain 4 n=1 Tax=Lithodesmium undulatum TaxID=59812 RepID=A0A7T6UZN4_LITUN)

HSP 1 Score: 179 bits (453), Expect = 1.410e-47
Identity = 124/306 (40.52%), Postives = 165/306 (53.92%), Query Frame = 3
Query:  108 DKNFKEYALTLIIIELFLFIIFSVLXXXXXXXXFEAILIPMYLLIGV*GSRERKIRAVYLFFF------------ILFXXXXXXXXQY---YTFILLLEP*I*NIY*HLILVLLIKNIMIMLFLIFCL*NTNVPFSYLIARSAC*STYCRFGFTCWYF--IKTWCIWFLKI*YYFFIP*XXXXXXXXXXXXIYYRCFICFNECY*TN*FKRIIAYSSVAHMNLVTLGIFSFNVIGIEGAILQSISHGFVSGGMFLLIGVLYNRYHSRFLYYYGGLVQMMPIYAIFFLIFTFANIAIPGTSSFVGEF 974
             KN KE+ L+ +I+E FL I+FSVL        FE++LIPM+L+IG+ GSRERKIRA Y FF             IL+         Y    TF    +  +  ++    +    K  M+ + L     +   P +  +  +        +GF  + F      C +F    Y                  I Y  F    +      FKRIIAY+SVAHMNLV +G+FSFN+IGIEGAILQS+SHGFV+  +FL+IG++Y R+H+R + YYGGLV +MPIY I FL FT ANI +PGTSSFVGEF
Sbjct:  114 SKNLKEFFLSFLIMEFFLIIVFSVLDLLLFYIFFESVLIPMFLIIGIWGSRERKIRAAYFFFLYTLLGSLLMLLTILYIYYQVGTTDYEILLTFSFSTDEQL-LLWLAFFISFAAKIPMVPVHLWLPEAHVEAPTAGSVILAGILLKLGTYGFIRFSFPLFPQACFYFAPFVY------------SVSVIGIIYTSFTAIRQ----TDFKRIIAYTSVAHMNLVMVGLFSFNIIGIEGAILQSLSHGFVASALFLIIGIVYERHHTRMVKYYGGLVHIMPIYIIIFLFFTMANIGLPGTSSFVGEF 402          
BLAST of mRNA_P-littoralis_Contig1582.4.1 vs. uniprot
Match: A0A7U0KSG6_9STRA (NADH-ubiquinone oxidoreductase chain 4 n=1 Tax=Aureoumbra lagunensis TaxID=44058 RepID=A0A7U0KSG6_9STRA)

HSP 1 Score: 176 bits (447), Expect = 8.720e-47
Identity = 123/305 (40.33%), Postives = 167/305 (54.75%), Query Frame = 3
Query:   87 CILFI*NDKNF-KEYALTLIIIELFLFIIFSVLXXXXXXXXFEAILIPMYLLIGV*GSRERKIRAVYLFF-FILFXXXXXXXXQYYTFILLLEP*I*NIY*HLILVLLIKNIMIMLFLIFCL*NTNVPFSYLIARSAC*STYCRFGFTCWYFIKTWCIWFLKI*Y-------YFFIP*XXXXXXXXXXXXIYYRCFICFNECY*TN*FKRIIAYSSVAHMNLVTLGIFSFNVIGIEGAILQSISHGFVSGGMFLLIGVLYNRYHSRFLYYYGGLVQMMPIYAIFFLIFTFANIAIPGTSSFVGEF 974
            C+L   N + F KEY +  +I+E+FL ++F V         FE++LIPMYL+IG+ GSR+RKIRA YLFF + LF          Y +         ++          K + +  F  F       P    +  +   +            +K     F+K          YFF P             I Y  F    +    + FKRIIAY+S+AHMNLV +GIFSFN+IG+EGAI+QSISHGFVS  +FL+IG++Y+RYH+R + Y+GG+ Q MPI+ IFFLIF+ ANIA+PGTSSFVGEF
Sbjct:   94 CLLASWNIELFLKEYFIAFLILEIFLILVFCVSDVFLFYIFFESVLIPMYLIIGIWGSRQRKIRAAYLFFLYTLFGSLVMLSAIGYLYTKTGTTDYESLLNFQFAEFEQKILWLAFFFSFASKIPMFPVHLWLPEAHVEAPTAGSVVLAGILLKLGVFGFVKFSIPLFSKASYFFTP----IVLTFSVIGIIYGSFTAIRQ----SDFKRIIAYTSIAHMNLVVMGIFSFNLIGLEGAIIQSISHGFVSSALFLIIGIVYDRYHTRTVRYFGGIAQTMPIFVIFFLIFSMANIALPGTSSFVGEF 390          
BLAST of mRNA_P-littoralis_Contig1582.4.1 vs. uniprot
Match: A0A8A6KJY2_9STRA (NADH-ubiquinone oxidoreductase chain 4 n=1 Tax=Rhizosolenia setigera TaxID=3005 RepID=A0A8A6KJY2_9STRA)

HSP 1 Score: 176 bits (445), Expect = 2.000e-46
Identity = 126/312 (40.38%), Postives = 163/312 (52.24%), Query Frame = 3
Query:   81 FLCILFI*ND--KNFKEYALTLIIIELFLFIIFSVLXXXXXXXXFEAILIPMYLLIGV*GSRERKIRAVYLFFFILFXXXXXXXXQYYTFILLLEP*I*NIY*HLILVLLI-----KNIMIMLFLIFCL*NTNVPFSYLIARSAC*STYCRFGFTCWYFIKTWCIWFLKI*Y-------YFFIP*XXXXXXXXXXXXIYYRCFICFNECY*TN*FKRIIAYSSVAHMNLVTLGIFSFNVIGIEGAILQSISHGFVSGGMFLLIGVLYNRYHSRFLYYYGGLVQMMPIYAIFFLIFTFANIAIPGTSSFVGEF 974
            FLC+L   N    N KEY L  +I+ELFL  +FS++        FE++LIPMYL+IG+ GSRERKIRA Y FF                 IL +   +      +IL         K + +  F  F      +P    +  +   +            +K     F++          +FF P             I Y  F    +      FKRIIAY+SVAHMNLV LGIFSFNVIGIEG++LQS+SHGFV+  +FL+IGV+Y R H+R + YYGGLV +MPIY   FL FT ANI +PGTSSF+GEF
Sbjct:  104 FLCLLNSWNSVQTNVKEYLLCFLIMELFLLCVFSIIDVFLFYVFFESVLIPMYLIIGIWGSRERKIRANYFFFLYTLLGSILMLLS----ILYIYSSVGTTNYEIILTTFFTETEQKILWLTFFASFATKVPMLPMHIWLPEAHVEAPTAGSVILAGVLLKLGTYGFIRFSIPLFPKASFFFSP----LVYAVATIGIIYTSFTAIRQ----TDFKRIIAYTSVAHMNLVVLGIFSFNVIGIEGSLLQSLSHGFVASSLFLIIGVVYERTHTRMVKYYGGLVHIMPIYIAIFLFFTMANIGLPGTSSFIGEF 403          
BLAST of mRNA_P-littoralis_Contig1582.4.1 vs. uniprot
Match: A0A7T0GFN9_9STRA (NADH-ubiquinone oxidoreductase chain 4 n=1 Tax=Eucampia zodiacus TaxID=444606 RepID=A0A7T0GFN9_9STRA)

HSP 1 Score: 172 bits (437), Expect = 2.580e-45
Identity = 124/316 (39.24%), Postives = 167/316 (52.85%), Query Frame = 3
Query:   84 LCILFI*ND--KNFKEYALTLIIIELFLFIIFSVLXXXXXXXXFEAILIPMYLLIGV*GSRERKIRAVYLFFF------------ILFXXXXXXXXQYYTFILL----LEP*I*NIY*HLILVLLIKNIMIMLFLIFCL*NTNVPFSYLIARSAC*STYCRFGFTCWYF--IKTWCIWFLKI*YYFFIP*XXXXXXXXXXXXIYYRCFICFNECY*TN*FKRIIAYSSVAHMNLVTLGIFSFNVIGIEGAILQSISHGFVSGGMFLLIGVLYNRYHSRFLYYYGGLVQMMPIYAIFFLIFTFANIAIPGTSSFVGE 971
            LC+L   N    N KEY ++ +++E FL  +F +L        FE++LIPMYL+IGV GSRERKIRA Y FF             IL+         Y T +      LE  I  ++         K  M+ + L     +   P +  +  +        +GF  + F      C +F    Y   +              I Y  F    +      FKRIIAY+SVAHMNLV +G+FSFN+IG+EGAILQS+SHGFV+  +FL+IGV+Y+R+H+R + YYGGL  +MP+Y I FL FT ANI +PGTSSFVGE
Sbjct:   99 LCLLVSWNSIQNNLKEYLISFLVMEFFLIGVFCILDVLLFYIFFESVLIPMYLIIGVWGSRERKIRAAYFFFLYTLLGSVLMLLSILYIYYQAGTTDYETLLTFSFSELEQKI--MWCSFFASFATKVPMLPVHLWLPEAHVEAPTAGSVILAGVLLKLGTYGFIRFSFALFPNACFYFAPFVYAMSVA------------GIIYTSFTAIRQ----TDFKRIIAYTSVAHMNLVMVGMFSFNIIGLEGAILQSLSHGFVASALFLIIGVVYDRHHTRMVKYYGGLAHVMPVYIIIFLFFTMANIGLPGTSSFVGE 396          
BLAST of mRNA_P-littoralis_Contig1582.4.1 vs. uniprot
Match: Q3S2A3_THAPS (NADH-ubiquinone oxidoreductase chain 4 n=9 Tax=Thalassiosirales TaxID=33847 RepID=Q3S2A3_THAPS)

HSP 1 Score: 171 bits (434), Expect = 8.030e-45
Identity = 120/328 (36.59%), Postives = 164/328 (50.00%), Query Frame = 3
Query:   54 FYCINLFINFLCILFI*ND--KNFKEYALTLIIIELFLFIIFSVLXXXXXXXXFEAILIPMYLLIGV*GSRERKIRAVYLFFF------------ILFXXXXXXXXQYYTFILLLEP*I*NIY*HLILVLLIKNIMIMLFLIFCL*NTNVPFSYLIARSAC*STYCRFGFTCWYFIKTWCIWFLKI*Y-------YFFIP*XXXXXXXXXXXXIYYRCFICFNECY*TN*FKRIIAYSSVAHMNLVTLGIFSFNVIGIEGAILQSISHGFVSGGMFLLIGVLYNRYHSRFLYYYGGLVQMMPIYAIFFLIFTFANIAIPGTSSFVGEF 974
            F  +   + FLCIL   N    N KE+ +  +++E FL  +FS+L        FE++LIPMYL++G+ GSRERKIRA Y FF             IL+         Y   +  +                 K + +  F  F      VP    +  +   +            +K     FL+  +       ++F P             I Y  F    +      FKRIIAY+SVAHMNLV +G+FSFN IG+EGAILQS+SHGFV+  +FL+IGV+Y R+H+R + YYGGLV +MP+Y   FL FT +NI +PGT SFVGEF
Sbjct:   94 FILLTTLLIFLCILISWNSVKTNIKEFLIAFLVMEFFLIGVFSILDLLLFYIYFESVLIPMYLIVGIWGSRERKIRAAYFFFLYTLLGSVLMLLSILYIYYQVGTTDYEVLLTFIFSKTEQ-----------KFLWLSFFGSFATKVPMVPVHLWLPEAHVEAPTAGSVILAGVLLKLGTYGFLRFSFPLFPEASFYFAP----IVYLLSVVGIVYTSFTAIRQ----TDFKRIIAYTSVAHMNLVMVGLFSFNTIGLEGAILQSLSHGFVASALFLIIGVVYERHHTRMVKYYGGLVHVMPLYTFIFLFFTMSNIGLPGTGSFVGEF 402          
BLAST of mRNA_P-littoralis_Contig1582.4.1 vs. uniprot
Match: A0A2U9GIS8_9STRA (NADH-ubiquinone oxidoreductase chain 4 n=1 Tax=Psammoneis japonica TaxID=517775 RepID=A0A2U9GIS8_9STRA)

HSP 1 Score: 171 bits (433), Expect = 1.040e-44
Identity = 117/308 (37.99%), Postives = 157/308 (50.97%), Query Frame = 3
Query:  108 DKNFKEYALTLIIIELFLFIIFSVLXXXXXXXXFEAILIPMYLLIGV*GSRERKIRAVYLFFF------------ILFXXXXXXXXQYYTFILLLEP*I*NIY*HLILVLLIKNIMIMLFLIFCL*NTNVPFSYLIARSAC*STYCRFGFTCWYFIKTWCIWFLKI*Y-------YFFIP*XXXXXXXXXXXXIYYRCFICFNECY*TN*FKRIIAYSSVAHMNLVTLGIFSFNVIGIEGAILQSISHGFVSGGMFLLIGVLYNRYHSRFLYYYGGLVQMMPIYAIFFLIFTFANIAIPGTSSFVGEF 974
              N KEY L+ +I+E FL  +F +L        FE++LIPM+L++G+ GSRERKIRA Y FF             IL+         Y   +      +             K + +  F  F      +P    +  +   +            +K     F++          ++F P             I Y  F    +      FKRIIAY+S+AHMNLV LGIFSFNVIGIEGA+LQS+SHGFV+  +FL+IGV+Y+R+H+R + YYGGLV +MPIY   FL FT ANI +PGTSSFVGEF
Sbjct:  113 QHNLKEYLLSFLIMEFFLIGVFCILDLLLFYIFFESVLIPMFLIVGIWGSRERKIRAAYFFFLYTLLGSVLMLLSILYVYYQVGTTDYEVLLTFSFSPVEQ-----------KLLWLTFFFSFASKVPMLPVHLWLPEAHVEAPTAGSVILAGVLLKLGTYGFIRFSLPLFPEACFYFSP----FVYSLSAIGIIYTSFTAIRQ----TDFKRIIAYTSIAHMNLVMLGIFSFNVIGIEGALLQSLSHGFVASALFLIIGVVYDRHHTRMVKYYGGLVHVMPIYIFIFLFFTMANIGLPGTSSFVGEF 401          
BLAST of mRNA_P-littoralis_Contig1582.4.1 vs. uniprot
Match: A0A7T5BNT8_9STRA (NADH-ubiquinone oxidoreductase chain 4 n=1 Tax=Odontella regia TaxID=1335017 RepID=A0A7T5BNT8_9STRA)

HSP 1 Score: 170 bits (430), Expect = 2.610e-44
Identity = 118/308 (38.31%), Postives = 162/308 (52.60%), Query Frame = 3
Query:  108 DKNFKEYALTLIIIELFLFIIFSVLXXXXXXXXFEAILIPMYLLIGV*GSRERKIRAVYLFFF------------ILFXXXXXXXXQYYTFILLLEP*I*NIY*HLILVLLIKNIMIMLFLIFCL*NTNVPFSYLIARSAC*STYCRFGFTCWYFIKTWCIWFLK-------I*YYFFIP*XXXXXXXXXXXXIYYRCFICFNECY*TN*FKRIIAYSSVAHMNLVTLGIFSFNVIGIEGAILQSISHGFVSGGMFLLIGVLYNRYHSRFLYYYGGLVQMMPIYAIFFLIFTFANIAIPGTSSFVGEF 974
              + KE+ L+ I++E FL  +F +L        FE++L+PM+L+IG+ GSRERKIRA Y FF             IL+         Y    +LL     NI          K + + LF  F      VP    +  +   +            +K     F++       I  ++F P             + Y  F    +      FKRIIAY+SVAHMNLV +GIFSF++IG+EGAILQSISHGFV+  +F++IGV+Y R+H+R + YY G+V +MP+YA  FLIFT ANI +PGTSSFVGEF
Sbjct:  109 SSSLKEFLLSFILLEFFLIGVFCILDLLLFYIFFESVLVPMFLIIGIWGSRERKIRAAYFFFLYTLLGSVLMLLAILYIYYQVGTTDYE---ILLSVSFSNIEQ--------KMLWLALFASFAAKIPMVPVHLWLPEAHVEAPTAGSVILAGVLLKLGTYGFIRFSLPLFPIASFYFAP----IVYTIAAVGVVYTSFTAIRQ----TDFKRIIAYTSVAHMNLVMIGIFSFSIIGLEGAILQSISHGFVASALFIIIGVVYERHHTRMIKYYSGIVHIMPLYATIFLIFTMANIGLPGTSSFVGEF 397          
BLAST of mRNA_P-littoralis_Contig1582.4.1 vs. uniprot
Match: A0A7T8JJN0_9STRA (NADH-ubiquinone oxidoreductase chain 4 n=1 Tax=Coscinodiscus wailesii TaxID=671091 RepID=A0A7T8JJN0_9STRA)

HSP 1 Score: 170 bits (430), Expect = 2.650e-44
Identity = 123/332 (37.05%), Postives = 165/332 (49.70%), Query Frame = 3
Query:   54 FYCINLFINFLCILFI*ND--KNFKEYALTLIIIELFLFIIFSVLXXXXXXXXFEAILIPMYLLIGV*GSRERKIRAVYLFFF------------ILFXXXXXXXXQYYTFILL----LEP*I*NIY*HLILVLLIKNIMIMLFLIFCL*NTNVPFSYLIARSAC*STYCRFGFTCWYFIKTWCIWFLKI*Y-------YFFIP*XXXXXXXXXXXXIYYRCFICFNECY*TN*FKRIIAYSSVAHMNLVTLGIFSFNVIGIEGAILQSISHGFVSGGMFLLIGVLYNRYHSRFLYYYGGLVQMMPIYAIFFLIFTFANIAIPGTSSFVGEF 974
            F  +   + FLCIL   N    N KEY +  +++E FL  +F+ L        FE++LIPM+L+IG+ GSRERKIRA Y FF             IL+         Y   I +    LE                K +    F  F      +P    +  +   +            +K      L+  +       ++F P             IY  C            FKRIIAY+SVAHMNLV +G+FSFN IG+EGAILQSISHGFV+  +F++IG++Y RYH+R + YYGGLV +MP+Y+I FL+FT ANI +PGT SFVGEF
Sbjct:   90 FILLTTLLTFLCILISWNSITHNLKEYLVFFLLMEFFLIGVFTTLDLLLFYIFFESVLIPMFLIIGIWGSRERKIRAAYFFFLYTLLGSVLMLLGILYIYYQTGTTDYEILISVNLTELEQ---------------KFLWFTFFASFATKVPMLPMHIWLPEAHVEAPTSGSVILAGVLLKLGTYGILRFLFPLFPEANFYFTP---LVYSLAAVGIIYTSCTAIRQTD-----FKRIIAYTSVAHMNLVIIGLFSFNTIGLEGAILQSISHGFVASALFIIIGIVYERYHTRMVKYYGGLVHIMPLYSIIFLLFTMANIGLPGTGSFVGEF 398          
BLAST of mRNA_P-littoralis_Contig1582.4.1 vs. uniprot
Match: Q9MGA9_9STRA (NADH-ubiquinone oxidoreductase chain 4 n=1 Tax=Synura synuroidea TaxID=47573 RepID=Q9MGA9_9STRA)

HSP 1 Score: 168 bits (425), Expect = 1.170e-43
Identity = 79/97 (81.44%), Postives = 90/97 (92.78%), Query Frame = 3
Query:  684 KRIIAYSSVAHMNLVTLGIFSFNVIGIEGAILQSISHGFVSGGMFLLIGVLYNRYHSRFLYYYGGLVQMMPIYAIFFLIFTFANIAIPGTSSFVGEF 974
            KRIIAYSS+AHMNLV LGIFSFN+IG+EG+ILQS+SHGFVSGGMFLL+G+LY+RYHSR LYYYGGLV +MP+Y+ FFL FT ANIA PGTSSFVGEF
Sbjct:  295 KRIIAYSSIAHMNLVVLGIFSFNIIGLEGSILQSLSHGFVSGGMFLLVGILYDRYHSRLLYYYGGLVHVMPLYSFFFLAFTLANIATPGTSSFVGEF 391          
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig1582.4.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
Q9G922_OCHDN1.450e-5744.38NADH-ubiquinone oxidoreductase chain 4 n=1 Tax=Och... [more]
A0A7T6UZN4_LITUN1.410e-4740.52NADH-ubiquinone oxidoreductase chain 4 n=1 Tax=Lit... [more]
A0A7U0KSG6_9STRA8.720e-4740.33NADH-ubiquinone oxidoreductase chain 4 n=1 Tax=Aur... [more]
A0A8A6KJY2_9STRA2.000e-4640.38NADH-ubiquinone oxidoreductase chain 4 n=1 Tax=Rhi... [more]
A0A7T0GFN9_9STRA2.580e-4539.24NADH-ubiquinone oxidoreductase chain 4 n=1 Tax=Euc... [more]
Q3S2A3_THAPS8.030e-4536.59NADH-ubiquinone oxidoreductase chain 4 n=9 Tax=Tha... [more]
A0A2U9GIS8_9STRA1.040e-4437.99NADH-ubiquinone oxidoreductase chain 4 n=1 Tax=Psa... [more]
A0A7T5BNT8_9STRA2.610e-4438.31NADH-ubiquinone oxidoreductase chain 4 n=1 Tax=Odo... [more]
A0A7T8JJN0_9STRA2.650e-4437.05NADH-ubiquinone oxidoreductase chain 4 n=1 Tax=Cos... [more]
Q9MGA9_9STRA1.170e-4381.44NADH-ubiquinone oxidoreductase chain 4 n=1 Tax=Syn... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig1582contigP-littoralis_Contig1582:3123..4356 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog70448.Q0P3F6
Preferred namenad4
PFAMsProton_antipo_M
Model size1234
Max annot lvl3041|Chlorophyta
KEGG rclassRC00061
KEGG koko:K03881
KEGG TC3.D.1.6
KEGG ReactionR11945
KEGG Pathwayko00190,ko01100,ko04714,ko04723,ko05012,map00190,map01100,map04714,map04723,map05012
KEGG ModuleM00142
Hectar predicted targeting categorysignal peptide
Exons1
Evalue4.81e-29
EggNOG OGsCOG1008@1|root,KOG4845@2759|Eukaryota,37KP8@33090|Viridiplantae,34JA9@3041|Chlorophyta
EC1.6.5.3
DescriptionProton-conducting membrane transporter
Cds size261
COG categoryC
BRITEko00000,ko00001,ko00002,ko01000,ko03029
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789757.3741045-UTR-P-littoralis_Contig1582:3122..38381680789757.3741045-UTR-P-littoralis_Contig1582:3122..3838Pylaiella littoralis U1_48UTRP-littoralis_Contig1582 3123..3838 +
1680789757.401251-UTR-P-littoralis_Contig1582:4099..43561680789757.401251-UTR-P-littoralis_Contig1582:4099..4356Pylaiella littoralis U1_48UTRP-littoralis_Contig1582 4100..4356 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789757.38822-CDS-P-littoralis_Contig1582:3838..40991680789757.38822-CDS-P-littoralis_Contig1582:3838..4099Pylaiella littoralis U1_48CDSP-littoralis_Contig1582 3839..4099 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig1582.4.1prot_P-littoralis_Contig1582.4.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig1582 3839..4099 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig1582.4.1

>prot_P-littoralis_Contig1582.4.1 ID=prot_P-littoralis_Contig1582.4.1|Name=mRNA_P-littoralis_Contig1582.4.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=87bp
MNLVTLGIFSFNVIGIEGAILQSISHGFVSGGMFLLIGVLYNRYHSRFLY
YYGGLVQMMPIYAIFFLIFTFANIAIPGTSSFVGEF*
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mRNA from alignment at P-littoralis_Contig1582:3123..4356+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig1582.4.1 ID=mRNA_P-littoralis_Contig1582.4.1|Name=mRNA_P-littoralis_Contig1582.4.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=1234bp|location=Sequence derived from alignment at P-littoralis_Contig1582:3123..4356+ (Pylaiella littoralis U1_48)
TTTGATTTTATCAATTTAGGCTACTCTTTTGGAATTGATGGATTATCTAT CTATTTTATTGTATTAACTTGTTTATTAATTTTCTTTGTATTTTATTTAT TTGAAATGATAAAAACTTTAAAGAATATGCATTAACTTTAATAATAATAG AATTATTCTTATTTATTATTTTTTCTGTTTTAGACCTTTTCCTTTTTTAT ATTTTCTTTGAAGCCATTTTAATACCTATGTATTTATTAATTGGGGTATG AGGTTCTAGAGAAAGAAAAATTCGTGCAGTATATTTATTCTTTTTTATAC TTTTTGTGGTTCTATTTTATTTCTTATTGCAATATTATACATTTATTCTA TTACTGGAACCTTAAATTTAGAATATTTATTAGCATTTAATTTTAGTATT ACTGATCAAAAATATTATGATTATGTTGTTTCTTATCTTTTGCCTCTAAA ATACCAATGTTCCCTTTTCATATTTGATTGCCAGAAGCGCATGTTGAAGC ACCTACTGTAGGTTCGGTTTTACTTGCTGGTATTTTATTAAAACTTGGTG TATATGGTTTCTTAAGATTTAGTATTACTTTTTTATTCCCTGATGCTTCT ATTTTCTTTTCACCTTTTGTATATTTATTATCTATTATAGGTGTTTTATA TGCTTCAATGAGTGCTATTAGACAAACTGATTTAAAAGAATTATTGCTTA TTCTTCTGTTGCCCATATGAATTTAGTAACCTTAGGTATCTTTTCTTTCA ATGTTATTGGAATTGAAGGAGCAATTTTACAAAGTATTAGTCATGGTTTT GTTTCAGGAGGAATGTTCCTTTTAATTGGAGTTTTATATAATCGTTATCA TTCAAGATTTTTATATTATTATGGAGGTTTAGTACAAATGATGCCGATAT ATGCAATCTTCTTCTTAATTTTTACTTTCGCAAATATTGCAATTCCTGGA ACTAGTAGTTTCGTTGGTGAATTTTAATTTTAGCTGGAATTTTTAAAACT AATGTTGTTACCGCAATTATAAGTGCTTTAGGAGTTATTTTATGTGGTGC TTATTCTTTATGATTATATAATAGAGTTATATTTGGAAATTTAAAAATTG ATTATACTATTAAATTTAAAGATATGGATTTAAAAGAATTTATTGTTTTA GCTCCGTTATTTGTATTGATCTTTGTTATGGGAATTTATCCTACACTTTT TTCTTCTTATATTAAAATATTCTCAGCTAGTTTA
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Coding sequence (CDS) from alignment at P-littoralis_Contig1582:3123..4356+

>mRNA_P-littoralis_Contig1582.4.1 ID=mRNA_P-littoralis_Contig1582.4.1|Name=mRNA_P-littoralis_Contig1582.4.1|organism=Pylaiella littoralis U1_48|type=CDS|length=261bp|location=Sequence derived from alignment at P-littoralis_Contig1582:3123..4356+ (Pylaiella littoralis U1_48)
ATGAATTTAGTAACCTTAGGTATCTTTTCTTTCAATGTTATTGGAATTGA
AGGAGCAATTTTACAAAGTATTAGTCATGGTTTTGTTTCAGGAGGAATGT
TCCTTTTAATTGGAGTTTTATATAATCGTTATCATTCAAGATTTTTATAT
TATTATGGAGGTTTAGTACAAATGATGCCGATATATGCAATCTTCTTCTT
AATTTTTACTTTCGCAAATATTGCAATTCCTGGAACTAGTAGTTTCGTTG
GTGAATTTTAA
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