mRNA_P-littoralis_Contig158.129.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig158.129.1
Unique NamemRNA_P-littoralis_Contig158.129.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
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BLAST of mRNA_P-littoralis_Contig158.129.1 vs. uniprot
Match: A0A6H5J7P3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J7P3_9PHAE)

HSP 1 Score: 86.3 bits (212), Expect = 2.820e-17
Identity = 42/64 (65.62%), Postives = 49/64 (76.56%), Query Frame = 3 
Query:   42 DNVPYVLARTIRSNLHQEAAKLIGCTGMGNQCKRGQSFARAMQMFPGKGMDRIPTEVVLALLRH 233
            DNV YVLART+R  L   AA+ IG +G GNQC+RG  FARAM MF GKGM+ IP +VVLALLR+
Sbjct:  160 DNVSYVLARTVRRILQYLAAQEIGASGQGNQCRRGDCFARAMGMFFGKGMEGIPRDVVLALLRY 223
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BLAST of mRNA_P-littoralis_Contig158.129.1 vs. uniprot
Match: D8LNQ5_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LNQ5_ECTSI)

HSP 1 Score: 59.7 bits (143), Expect = 1.090e-7
Identity = 27/40 (67.50%), Postives = 31/40 (77.50%), Query Frame = 3 
Query:   42 DNVPYVLARTIRSNLHQEAAKLIGCTGMGNQCKRGQSFAR 161
            DNVPYVLART+RSNL   AA+ IG TG GNQC+RG   +R
Sbjct:  127 DNVPYVLARTVRSNLQYLAAQEIGATGQGNQCRRGMFCSR 166
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig158.129.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5J7P3_9PHAE2.820e-1765.63Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LNQ5_ECTSI1.090e-767.50Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig158contigP-littoralis_Contig158:480428..481037 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size610
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Cds size114
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789757.0838969-UTR-P-littoralis_Contig158:480427..4805491680789757.0838969-UTR-P-littoralis_Contig158:480427..480549Pylaiella littoralis U1_48UTRP-littoralis_Contig158 480428..480549 +
1680789757.1061826-UTR-P-littoralis_Contig158:480663..4810371680789757.1061826-UTR-P-littoralis_Contig158:480663..481037Pylaiella littoralis U1_48UTRP-littoralis_Contig158 480664..481037 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789757.095049-CDS-P-littoralis_Contig158:480549..4806631680789757.095049-CDS-P-littoralis_Contig158:480549..480663Pylaiella littoralis U1_48CDSP-littoralis_Contig158 480550..480663 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig158.129.1prot_P-littoralis_Contig158.129.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig158 480550..480663 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig158.129.1

>prot_P-littoralis_Contig158.129.1 ID=prot_P-littoralis_Contig158.129.1|Name=mRNA_P-littoralis_Contig158.129.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=38bp
MGNQCKRGQSFARAMQMFPGKGMDRIPTEVVLALLRH*
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mRNA from alignment at P-littoralis_Contig158:480428..481037+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig158.129.1 ID=mRNA_P-littoralis_Contig158.129.1|Name=mRNA_P-littoralis_Contig158.129.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=610bp|location=Sequence derived from alignment at P-littoralis_Contig158:480428..481037+ (Pylaiella littoralis U1_48)
CAGGGCGTGCTGGATCGCCAGAAGGAGAGGGAGGAAAATACGACAACGTG
CCGTATGTCCTTGCTCGCACGATCCGCAGCAATTTGCACCAGGAGGCGGC
GAAATTGATCGGGTGTACGGGCATGGGTAACCAGTGCAAGCGTGGGCAGA
GCTTTGCACGAGCGATGCAGATGTTCCCTGGAAAAGGAATGGACCGAATA
CCCACTGAAGTGGTTCTAGCACTGTTGAGGCACTGATGATGGTTGCGAAT
TGCTGTCGGGGAAATAGCAACTGCTGTATTTCGTAGCCCACGAGCGGACG
GCGCGGTGCGTCTGTCTGTTTGATTATTTATGAGAAGTGTACGGGCTTGT
CTCCGTTTGTTGGGCATTGAAACACGAAGTGTGCTATGACACGATATTGG
TGGCATGAAAATAGGAAACACTTTCGAAGTAGCATATTAAACTAAATTGT
ACTCAGAAATATGGTATGATATTTGATGGGGTGTCTCAGAGCAAATCAAT
GATAGTTGAATCCGCGATGAATGAGGGAGTTCCGTGCCGATTTATGGGGT
CTCCATGTGTTGTTTTGGTGTAAAATGATACTATTTGTCTCCAACTTCAA
CAAGAATCTG
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Coding sequence (CDS) from alignment at P-littoralis_Contig158:480428..481037+

>mRNA_P-littoralis_Contig158.129.1 ID=mRNA_P-littoralis_Contig158.129.1|Name=mRNA_P-littoralis_Contig158.129.1|organism=Pylaiella littoralis U1_48|type=CDS|length=114bp|location=Sequence derived from alignment at P-littoralis_Contig158:480428..481037+ (Pylaiella littoralis U1_48)
ATGGGTAACCAGTGCAAGCGTGGGCAGAGCTTTGCACGAGCGATGCAGAT
GTTCCCTGGAAAAGGAATGGACCGAATACCCACTGAAGTGGTTCTAGCAC
TGTTGAGGCACTGA
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