mRNA_P-littoralis_Contig158.128.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig158.128.1
Unique NamemRNA_P-littoralis_Contig158.128.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
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BLAST of mRNA_P-littoralis_Contig158.128.1 vs. uniprot
Match: A0A6H5K6N4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K6N4_9PHAE)

HSP 1 Score: 68.2 bits (165), Expect = 2.070e-12
Identity = 34/59 (57.63%), Postives = 42/59 (71.19%), Query Frame = 3 
Query:    3 ELYHEHVHLPTPGEDQDQVMEHYDLVGCTGAIGSTDVTHIK*AACPYSLGEAVHGKGGI 179
            EL+ EH++LPT G  QD+VM  YD +G TGAIGSTDVTHI    CP++LG +  GK G 
Sbjct:   45 ELFEEHIYLPT-GSYQDEVMCMYDKLGMTGAIGSTDVTHIGWGMCPFTLGRSYTGKEGF 102
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BLAST of mRNA_P-littoralis_Contig158.128.1 vs. uniprot
Match: A0A6H5KH50_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KH50_9PHAE)

HSP 1 Score: 68.2 bits (165), Expect = 6.550e-12
Identity = 34/59 (57.63%), Postives = 42/59 (71.19%), Query Frame = 3 
Query:    3 ELYHEHVHLPTPGEDQDQVMEHYDLVGCTGAIGSTDVTHIK*AACPYSLGEAVHGKGGI 179
            EL+ EH++LPT G  QD+VM  YD +G TGAIGSTDVTHI    CP++LG +  GK G 
Sbjct:   45 ELFEEHIYLPT-GSYQDEVMCMYDKLGMTGAIGSTDVTHIGWGMCPFTLGRSYTGKEGF 102
[Close]
BLAST of mRNA_P-littoralis_Contig158.128.1 vs. uniprot
Match: A0A6H5JCU6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JCU6_9PHAE)

HSP 1 Score: 68.2 bits (165), Expect = 1.180e-11
Identity = 34/59 (57.63%), Postives = 42/59 (71.19%), Query Frame = 3 
Query:    3 ELYHEHVHLPTPGEDQDQVMEHYDLVGCTGAIGSTDVTHIK*AACPYSLGEAVHGKGGI 179
            EL+ EH++LPT G  QD+VM  YD +G TGAIGSTDVTHI    CP++LG +  GK G 
Sbjct:  292 ELFEEHIYLPT-GSYQDEVMCMYDKLGMTGAIGSTDVTHIGWGMCPFTLGRSYTGKEGF 349
[Close]
BLAST of mRNA_P-littoralis_Contig158.128.1 vs. uniprot
Match: A0A6H5JBS8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JBS8_9PHAE)

HSP 1 Score: 58.9 bits (141), Expect = 1.740e-9
Identity = 30/53 (56.60%), Postives = 37/53 (69.81%), Query Frame = 3 
Query:   21 VHLPTPGEDQDQVMEHYDLVGCTGAIGSTDVTHIK*AACPYSLGEAVHGKGGI 179
            ++LPT G  QD+VM  YD +G TGAIGSTDVTHI    CP++LG +  GK G 
Sbjct:    9 LYLPT-GSYQDEVMCMYDKLGMTGAIGSTDVTHIGWGMCPFTLGRSYTGKEGF 60
[Close]
BLAST of mRNA_P-littoralis_Contig158.128.1 vs. uniprot
Match: A0A6H5KSI7_9PHAE (DDE Tnp4 domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KSI7_9PHAE)

HSP 1 Score: 61.2 bits (147), Expect = 3.130e-9
Identity = 30/59 (50.85%), Postives = 40/59 (67.80%), Query Frame = 3 
Query:    3 ELYHEHVHLPTPGEDQDQVMEHYDLVGCTGAIGSTDVTHIK*AACPYSLGEAVHGKGGI 179
            E++ EH++LPT G   D+VM  +  +GCTGA GSTDVTHI    CP++LG +  GK G 
Sbjct:  174 EMFDEHIYLPT-GTYLDEVMGIFHQLGCTGACGSTDVTHIGRNMCPFTLGRSFTGKEGF 231
[Close]
BLAST of mRNA_P-littoralis_Contig158.128.1 vs. uniprot
Match: A0A6H5JIW4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JIW4_9PHAE)

HSP 1 Score: 60.5 bits (145), Expect = 4.060e-9
Identity = 30/59 (50.85%), Postives = 39/59 (66.10%), Query Frame = 3 
Query:    3 ELYHEHVHLPTPGEDQDQVMEHYDLVGCTGAIGSTDVTHIK*AACPYSLGEAVHGKGGI 179
            E++ EH++LPT G   D+VM  +  +GCTGA GSTDVTHI    CP++LG    GK G 
Sbjct:   39 EMFDEHIYLPT-GTYLDEVMGIFHQLGCTGACGSTDVTHIGWNMCPFTLGRPFTGKEGF 96
[Close]
BLAST of mRNA_P-littoralis_Contig158.128.1 vs. uniprot
Match: A0A6H5KL34_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KL34_9PHAE)

HSP 1 Score: 56.6 bits (135), Expect = 5.040e-9
Identity = 33/61 (54.10%), Postives = 38/61 (62.30%), Query Frame = 1 
Query:   73 ISWGVLEPSDRL--MSPTSSERLAHILWA-------KQYTGKEGFATIAYQAIVDHTGRLL 228
            IS GV+E  D L       S  + HI WA       +QYTGKEGF +IAYQAIVDHTGR+L
Sbjct:    4 ISPGVMEAYDLLGFTGAIGSTDVTHIRWACCPYSWARQYTGKEGFPSIAYQAIVDHTGRVL 64
[Close]
BLAST of mRNA_P-littoralis_Contig158.128.1 vs. uniprot
Match: D7FSK2_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FSK2_ECTSI)

HSP 1 Score: 60.1 bits (144), Expect = 6.630e-9
Identity = 29/59 (49.15%), Postives = 38/59 (64.41%), Query Frame = 3 
Query:    6 LYHEHVHLPTPGEDQ-DQVMEHYDLVGCTGAIGSTDVTHIK*AACPYSLGEAVHGKGGI 179
            +Y EH+HLPT    + D V+E YD +G TGA+GS DVTHI  + CPY+   +  GK G 
Sbjct:    1 MYDEHIHLPTEESGKLDLVIEQYDRLGFTGAMGSMDVTHIAWSRCPYNQARSYTGKEGF 59
[Close]
BLAST of mRNA_P-littoralis_Contig158.128.1 vs. uniprot
Match: A0A6H5KVT5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KVT5_9PHAE)

HSP 1 Score: 54.7 bits (130), Expect = 1.270e-7
Identity = 26/40 (65.00%), Postives = 28/40 (70.00%), Query Frame = 3 
Query:   60 MEHYDLVGCTGAIGSTDVTHIK*AACPYSLGEAVHGKGGI 179
            ME YDL+G TGAIGSTDVTHI+ A CPYS      GK G 
Sbjct:    1 MEAYDLLGFTGAIGSTDVTHIRWACCPYSWARQYTGKEGF 40
[Close]
BLAST of mRNA_P-littoralis_Contig158.128.1 vs. uniprot
Match: A0A6H5J792_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J792_9PHAE)

HSP 1 Score: 54.3 bits (129), Expect = 1.480e-7
Identity = 26/40 (65.00%), Postives = 29/40 (72.50%), Query Frame = 3 
Query:   60 MEHYDLVGCTGAIGSTDVTHIK*AACPYSLGEAVHGKGGI 179
            ME YDL+G TGAIGSTDVTHI+ A CPYS      GK G+
Sbjct:    1 MEVYDLLGFTGAIGSTDVTHIRWAFCPYSWARQYTGKEGL 40
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig158.128.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 16
Match NameE-valueIdentityDescription
A0A6H5K6N4_9PHAE2.070e-1257.63Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KH50_9PHAE6.550e-1257.63Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JCU6_9PHAE1.180e-1157.63Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JBS8_9PHAE1.740e-956.60Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KSI7_9PHAE3.130e-950.85DDE Tnp4 domain-containing protein (Fragment) n=1 ... [more]
A0A6H5JIW4_9PHAE4.060e-950.85Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KL34_9PHAE5.040e-954.10Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]
D7FSK2_ECTSI6.630e-949.15Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KVT5_9PHAE1.270e-765.00Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5J792_9PHAE1.480e-765.00Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig158contigP-littoralis_Contig158:476288..477341 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog2880.D7FSK2
PFAMsPlant_tran
Model size230
Max annot lvl2759|Eukaryota
Hectar predicted targeting categoryno signal peptide or anchor
Exons2
Evalue0.000302
EggNOG OGs2E2RF@1|root,2S9YA@2759|Eukaryota
DescriptionPlant transposon protein
Cds size120
COG categoryS
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789757.031617-CDS-P-littoralis_Contig158:476287..4764071680789757.031617-CDS-P-littoralis_Contig158:476287..476407Pylaiella littoralis U1_48CDSP-littoralis_Contig158 476288..476407 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789757.0429175-UTR-P-littoralis_Contig158:476407..4764591680789757.0429175-UTR-P-littoralis_Contig158:476407..476459Pylaiella littoralis U1_48UTRP-littoralis_Contig158 476408..476459 -
1680789757.0525227-UTR-P-littoralis_Contig158:477285..4773411680789757.0525227-UTR-P-littoralis_Contig158:477285..477341Pylaiella littoralis U1_48UTRP-littoralis_Contig158 477286..477341 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig158.128.1prot_P-littoralis_Contig158.128.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig158 476288..476407 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig158.128.1

>prot_P-littoralis_Contig158.128.1 ID=prot_P-littoralis_Contig158.128.1|Name=mRNA_P-littoralis_Contig158.128.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=40bp
MSPTSSERLAHILWAKQYTGKEGFATIAYQAIVDHTGRLL
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mRNA from alignment at P-littoralis_Contig158:476288..477341-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig158.128.1 ID=mRNA_P-littoralis_Contig158.128.1|Name=mRNA_P-littoralis_Contig158.128.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=1054bp|location=Sequence derived from alignment at P-littoralis_Contig158:476288..477341- (Pylaiella littoralis U1_48)
AAGAGCTCTACCACGAACACGTTCATCTGCCCACCCCCGGCGAGGACCAA
GACCAGGTGACTAGTGAATGCATTTTTGGCCCGGCACACGTATCACAGAC
CTCATTTACAACGCGAAGTTTATCGTACCTCCGTACACTGGTGCTGCACG
CTCTTCTTTTGCTTTTCTCTTGCCGCAAGGACGAACGCAAACTTACACCA
CTCAACAGCGCAGGGGTCAGTTCCTGTTGGTGGGATCATGATTCATTGCA
TTAGCCTATAGCTCCGACCGCGGAAGCATCTTGTTCGTGGGTGTTCGTTC
GCGTTTGGTTGGGTCGTGTACAAGACGTGCACGGTTCTTCGTACACGGGA
AGTCGATACTGAGTGATGCCGGCAAGCTGCTCGCATCCGACCCTGTGTCG
TGCACGACGGGCCCGTAGTTTATTTAGTCTGCAAGCACACGTTTTTTTGC
AGCAAGTATGTACTCTCTTGAGGTTTACTTTCTGGCGTACCGCAATAACA
ATGATGAACACCTGCATCGGACGCAATATTACCCACTGCCATAAGTCAAG
CACGAGCATTGCTGCCGTGGTTGCTCATAGCTCTGAATAAAGAACAACGC
ACAACATGAAATCAAAAATGTTTCGGCATCTGCGGCCAGGTACGTTTATA
CGACACATTGCTTCCGGTTGTAGTGTGTGTGCTTCGAGTTGTACCATTGC
AGTTTCGTTTGTAGTCTGGGCGCTCGCTGGTTCGGACGCACTACCTCAAC
CCAGTTGCACGCTGTTTTTGTTTGAGGACACCGGTGCGCAGGGTCCATAA
ATGAATGAAACTTTTGCGTTTGATCCAAACACCCAACAGCATACTTGATG
GTTTGACCCCATTGTTGTTTGTGAAATATCAGGTGATGGAGCATTACGAT
CTCGTGGGGTGTACTGGAGCCATCGGATCGACTGATGTCACCCACATCAA
GTGAGCGGCTTGCCCATATTCTTTGGGCGAAGCAGTACACGGGAAAGGAG
GGATTCGCGACCATCGCCTACCAGGCGATCGTGGATCACACTGGGCGTCT
CCTG
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Coding sequence (CDS) from alignment at P-littoralis_Contig158:476288..477341-

>mRNA_P-littoralis_Contig158.128.1 ID=mRNA_P-littoralis_Contig158.128.1|Name=mRNA_P-littoralis_Contig158.128.1|organism=Pylaiella littoralis U1_48|type=CDS|length=120bp|location=Sequence derived from alignment at P-littoralis_Contig158:476288..477341- (Pylaiella littoralis U1_48)
ATGTCACCCACATCAAGTGAGCGGCTTGCCCATATTCTTTGGGCGAAGCA
GTACACGGGAAAGGAGGGATTCGCGACCATCGCCTACCAGGCGATCGTGG
ATCACACTGGGCGTCTCCTG
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