mRNA_P-littoralis_Contig158.119.2 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig158.119.2
Unique NamemRNA_P-littoralis_Contig158.119.2
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
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BLAST of mRNA_P-littoralis_Contig158.119.2 vs. uniprot
Match: A0A6H5KRI1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KRI1_9PHAE)

HSP 1 Score: 298 bits (763), Expect = 2.830e-94
Identity = 164/218 (75.23%), Postives = 166/218 (76.15%), Query Frame = 2 
Query:    5 MDMDTATVSTPARQSLGARPAVTPTQSAKKDEDERCKRRTSGPRAVGTDGQQATPDLTKGNGPNYPRGFQPGREGSDGAKLPVYMFLQQGVLEEGVQEHCTAGVHARVARWWSSNADSNEDRAFTGNCTSTGKILAAVVK--------DEDLACYYGLKKSFSGRSTTWVLSRSSLARERADAQWSFCLPAGWAEEYGADGSWKFKTSKGGTPVSDIL 634
            MDMDTATVSTPARQSLG RPAVTPTQSAKKDEDER KRRTSGPRAVGTD QQAT D TKGNGPNYP GF+PGREGSDGAKLPVYMFLQQG LEEGVQEH TA VHA VARWWSS ADSNEDRAFTGN TSTGKILA+VVK        DEDLA YYGLKKSFSG                            WAEEY ADGSWKFKTSKGGTPVS  L
Sbjct:   22 MDMDTATVSTPARQSLGTRPAVTPTQSAKKDEDERRKRRTSGPRAVGTDAQQATHDSTKGNGPNYPCGFKPGREGSDGAKLPVYMFLQQGALEEGVQEHTTAEVHAHVARWWSSYADSNEDRAFTGNRTSTGKILASVVKADLYIPRQDEDLAFYYGLKKSFSG----------------------------WAEEYSADGSWKFKTSKGGTPVSVSL 211
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BLAST of mRNA_P-littoralis_Contig158.119.2 vs. uniprot
Match: A0A6H5K1G6_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K1G6_9PHAE)

HSP 1 Score: 179 bits (455), Expect = 3.150e-50
Identity = 93/101 (92.08%), Postives = 94/101 (93.07%), Query Frame = 2 
Query:    5 MDMDTATVSTPARQSLGARPAVTPTQSAKKDEDERCKRRTSGPRAVGTDGQQATPDLTKGNGPNYPRGFQPGREGSDGAKLPVYMFLQQGVLEEGVQEHCT 307
            MDMDTATVSTPARQSLG RPAVTPTQSAKKDEDER KRRTSGPRAVGTD QQAT D TKGNGPNYPRGF+PGREGSDGAKLPVYMFLQQG LEEGVQEH T
Sbjct:   22 MDMDTATVSTPARQSLGTRPAVTPTQSAKKDEDERRKRRTSGPRAVGTDAQQATHDSTKGNGPNYPRGFKPGREGSDGAKLPVYMFLQQGALEEGVQEHTT 122
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BLAST of mRNA_P-littoralis_Contig158.119.2 vs. uniprot
Match: A0A6H5KFP1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KFP1_9PHAE)

HSP 1 Score: 130 bits (327), Expect = 8.610e-28
Identity = 65/93 (69.89%), Postives = 76/93 (81.72%), Query Frame = 2 
Query:  626 DILEMRFAHIRAGMGCHKAPTASQAAQAGMHGDTCRLSHGERRRNSSRSGGQPFDIQQGATLRVALPVNAEERGEVVRAATWRNADHVFETRS 904
            DILE RFAHIR GMG HKAPTA+QAA+   HGDTCR+SHG +RRN+SRS G  F++Q  A++RVALPVNA ER EVVRAATW   DHVFE+R+
Sbjct:  800 DILEHRFAHIRTGMGTHKAPTATQAARQAKHGDTCRVSHGLQRRNASRSTGS-FEVQSSASIRVALPVNASEREEVVRAATWDRDDHVFESRA 891
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BLAST of mRNA_P-littoralis_Contig158.119.2 vs. uniprot
Match: A0A6H5K7Z3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K7Z3_9PHAE)

HSP 1 Score: 108 bits (269), Expect = 8.100e-21
Identity = 55/93 (59.14%), Postives = 64/93 (68.82%), Query Frame = 2 
Query:  626 DILEMRFAHIRAGMGCHKAPTASQAAQAGMHGDTCRLSHGERRRNSSRSGGQPFDIQQGATLRVALPVNAEERGEVVRAATWRNADHVFETRS 904
            DILE RFAHIR+G G HK PTA QA +A   GDT R+ HG RRRNSSRS G  F ++    +R A P NA ER +VVRA T  +A HVFE+RS
Sbjct:  576 DILEHRFAHIRSGRGTHKNPTAMQAIEAARAGDTARMFHGTRRRNSSRSAGMAFQLEDSQGVRAAFPANASERAQVVRAETRDDAHHVFESRS 668
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BLAST of mRNA_P-littoralis_Contig158.119.2 vs. uniprot
Match: A0A6H5K994_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K994_9PHAE)

HSP 1 Score: 82.0 bits (201), Expect = 1.290e-13
Identity = 44/74 (59.46%), Postives = 52/74 (70.27%), Query Frame = 2 
Query:  422 KDEDLACYYGLKKSFSGRSTTWVLSRSSLARERADAQWSFC--LPAGWAEEYGADGSWKFKTSKGGTPVSDILE 637
            +DEDLA YYGL+K  S + T WVLSRSSL  ERA+A  SF   LPAGW EE+G D SW FK +  GTPV+  +E
Sbjct:   63 RDEDLAQYYGLRK-VSSKPTKWVLSRSSLGEERAEAHISFGFGLPAGWCEEFGPDHSWTFKKTHDGTPVAISVE 135
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig158.119.2 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
A0A6H5KRI1_9PHAE2.830e-9475.23Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K1G6_9PHAE3.150e-5092.08Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]
A0A6H5KFP1_9PHAE8.610e-2869.89Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K7Z3_9PHAE8.100e-2159.14Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K994_9PHAE1.290e-1359.46Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig158contigP-littoralis_Contig158:435144..437763 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size1918
Hectar predicted targeting categoryother localisation
Exons5
Cds size906
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig158.119.2prot_P-littoralis_Contig158.119.2Pylaiella littoralis U1_48polypeptideP-littoralis_Contig158 435148..436643 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789756.880816-UTR-P-littoralis_Contig158:435143..4351471680789756.880816-UTR-P-littoralis_Contig158:435143..435147Pylaiella littoralis U1_48UTRP-littoralis_Contig158 435144..435147 +
1680789756.9332843-UTR-P-littoralis_Contig158:436643..4368361680789756.9332843-UTR-P-littoralis_Contig158:436643..436836Pylaiella littoralis U1_48UTRP-littoralis_Contig158 436644..436836 +
1680789756.9419892-UTR-P-littoralis_Contig158:436948..4377631680789756.9419892-UTR-P-littoralis_Contig158:436948..437763Pylaiella littoralis U1_48UTRP-littoralis_Contig158 436949..437763 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789756.8898728-CDS-P-littoralis_Contig158:435147..4353241680789756.8898728-CDS-P-littoralis_Contig158:435147..435324Pylaiella littoralis U1_48CDSP-littoralis_Contig158 435148..435324 +
1680789756.900486-CDS-P-littoralis_Contig158:435519..4357621680789756.900486-CDS-P-littoralis_Contig158:435519..435762Pylaiella littoralis U1_48CDSP-littoralis_Contig158 435520..435762 +
1680789756.911079-CDS-P-littoralis_Contig158:435889..4360901680789756.911079-CDS-P-littoralis_Contig158:435889..436090Pylaiella littoralis U1_48CDSP-littoralis_Contig158 435890..436090 +
1680789756.9243681-CDS-P-littoralis_Contig158:436358..4366431680789756.9243681-CDS-P-littoralis_Contig158:436358..436643Pylaiella littoralis U1_48CDSP-littoralis_Contig158 436359..436643 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig158.119.2

>prot_P-littoralis_Contig158.119.2 ID=prot_P-littoralis_Contig158.119.2|Name=mRNA_P-littoralis_Contig158.119.2|organism=Pylaiella littoralis U1_48|type=polypeptide|length=302bp
MDMDTATVSTPARQSLGARPAVTPTQSAKKDEDERCKRRTSGPRAVGTDG
QQATPDLTKGNGPNYPRGFQPGREGSDGAKLPVYMFLQQGVLEEGVQEHC
TAGVHARVARWWSSNADSNEDRAFTGNCTSTGKILAAVVKDEDLACYYGL
KKSFSGRSTTWVLSRSSLARERADAQWSFCLPAGWAEEYGADGSWKFKTS
KGGTPVSDILEMRFAHIRAGMGCHKAPTASQAAQAGMHGDTCRLSHGERR
RNSSRSGGQPFDIQQGATLRVALPVNAEERGEVVRAATWRNADHVFETRS
V*
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mRNA from alignment at P-littoralis_Contig158:435144..437763+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig158.119.2 ID=mRNA_P-littoralis_Contig158.119.2|Name=mRNA_P-littoralis_Contig158.119.2|organism=Pylaiella littoralis U1_48|type=mRNA|length=2620bp|location=Sequence derived from alignment at P-littoralis_Contig158:435144..437763+ (Pylaiella littoralis U1_48)
AGGTATGGATATGGACACCGCCACTGTCTCCACACCCGCGCGCCAAAGCT
TGGGGGCTCGTCCTGCGGTGACACCGACACAATCGGCCAAAAAGGATGAA
GACGAGAGGTGTAAGCGCCGAACCTCCGGACCGCGCGCGGTCGGTACAGA
CGGTCAGCAGGCCACACCCGACCTCACGAAGGTGCGCCAATCGACTTATT
TGTTTTGTGCAGTACTGAGGGCGTACGAGGTTGACGGCAGTCTGTTTGGT
TTCATATGCGCCGTTTGAAGTCGATGGTCGTCCTCTTTTATTTTCGCAAC
AGCGGCCCCAAGATAACGGGCATATACGAAGATGATCGTTGGCTACTGTC
TAAATATGCATGTTTATTCTTTGCAGGGGAATGGGCCGAACTACCCTCGC
GGGTTTCAACCAGGTAGGGAgGGAAGCGACGGGGCGAAGCTACCTGTGTA
CATGTTCCTCCAGCAAGGCGTCCTGGAGGAGGGCGTGCAAGAACACTGCA
CCGCTGGAGTGCACGCTCGTGTTGCCCGGTGGTGGTCTAGCAACGCGGAC
AGCAACGAGGACCGCGCTTTTACTGGGAACTGCACCTCGACCGGCAAAAT
CTTGGCTGCGGTGGTCAAGGTGTTGGTAGGTGTTGCTATTCAATGGACGT
GTTTATGGTACCCGTCTTGCAACCTTGCTTATGTGCCGGCGTTATTTACA
CAGTGACTCTCGTGGTATGTTGGCCGATTTATATAACCCGCGCCAGGACG
AGGACCTCGCCTGCTACTACGGACTCAAGAAAAGCTTCTCTGGTAGGTCC
ACGACGTGGGTGCTGTCGAGGTCGTCATTGGCACGAGAGCGAGCCGATGC
GCAGTGGAGTTTTTGTCTACCGGCAGGATGGGCGGAGGAGTACGGTGCTG
ACGGCTCATGGAAGTTCAAGACTAGCAAGGGTGGAACGCCCGTCTCGGTG
AGCCTATCCTGGTGATGTGCGCGGTTGAATTTTGTCTGTGTTGTAGAGAT
TGCAGATGAGTGGGCTAGCTGGCGTGATAGGGCGCGCCCGTGCTGGTCAA
TAATCTGCAAGTGAACTCGGGGCTTGTGTGTGCGTATTTGTAAAGTATAT
ATTTTTGTTGGCTGGCGCGACGCTATCGTCGTGTGGTGCTGGTGTCAATT
AACTCCTTTATGTCCGTACGTTCGACTCCCTCGACGCGCGTGACTGCCCC
TTGCATCTCACCCAGGACATTCTCGAAATGAGGTTCGCGCACATAAGGGC
TGGAATGGGGTGTCACAAGGCTCCTACGGCGTCTCAGGCGGCTCAAGCTG
GAATGCACGGAGATACTTGTCGGCTGTCCCACGGTGAACGGCGTCGCAAT
TCGTCGAGATCGGGCGGGCAGCCGTTCGACATCCAACAGGGAGCAACTCT
GCGAGTGGCATTACCTGTTAACGCGGAAGAGCGAGGAGAAGTAGTGAGAG
CCGCCACGTGGCGCAATGCAGACCATGTGTTTGAGACGCGCTCGGTGTGA
AGTACTGCTGTGTGTCGTGTGCTGTGTAACGCCAAAGTAGGAGCTTTCGC
TTTGTGGTTCGGTTTGAACTCTGTTGTGTGTGTACGATGAGTTCCGAATA
GTTTCCCTTGTGTTTTCGATGTTGTTTATTCGTGCCATTGGTAGGAGGGG
CGGCAGCATCGTGTATGGCGTGCACGTACCTGGTTGATCTAAAGTTGTCT
GCATGGGGTAGGGGATTAGTGCGGCTGTCATCACCGCTTTGTGGTTCGGT
TTGTACTCTGTTGTGTGTGTACGATGAGTTCCCGTTTAGATTTCCTTATC
TAAAGTTGTCTGCATGGGGTAGGGGGTTAGTGCGGCTGTCATCACCGCTT
TGTGGTTCGGTTTGTACTCTGTTGTGTGTGTACGATGAGTTCCCGATTAG
ATTTCCTTGTGTTTTCGATGTTTATTCGTGCCATTGGTAGGAGGGGCGGC
AGCATCGTGTATGGTGTGTACCTACGTGGTTGATCTACCACAGTCTGCGT
GGAGGTTAGGGCTTGTGCGGCTGGCATCACCGCTTTGTGGTTCGGTTGGT
GCCTTGTTTGAGGGCGTCCTTTCGTGAGATGAATTGATCACGAACTTGGT
TACAACCTGATACAAGTACTCATTCTGAGCGGAAATGCAAGGACGATATT
GTAAGGAAAAAGGGCGACGTTCAGGGGTTCGATCCTCGCTCAGATCACTT
TTGTTTTCCCCAGAACGATTTTTTTGCAACACATATTTCAAGCTCATTTT
TTTGTGCCACCCTGGCGCTTTGCTCCCGGTCAGCACGAAAGCCAAGTACC
AACAATTGCAGACGGCGGTCCATAGATTCCAAAGTGAAAACTAAAACGCG
AGTACCACATTTTTTGGAGCCGTACCAGAAAGAACAAGGACGCACTTGAT
GCGTTACTGACTTGAATGTTTCAAGAGGAGGGATGTTAACACGAACAACC
CGTTTTTTTGTTCAAGGAGGAAGCGCCTATCCTACCCGAACATCACGCCA
AAAAAAAAAGGGCGAGAAAACGACTATCGGTACCACCTCGTATCCCCGCT
CAGAGGGAGTGTTTGGAAATTCTCAAGCACGTACACCCGAACCCGAAAGG
CTAGTCGAATCAGCTTTCCA
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Coding sequence (CDS) from alignment at P-littoralis_Contig158:435144..437763+

>mRNA_P-littoralis_Contig158.119.2 ID=mRNA_P-littoralis_Contig158.119.2|Name=mRNA_P-littoralis_Contig158.119.2|organism=Pylaiella littoralis U1_48|type=CDS|length=906bp|location=Sequence derived from alignment at P-littoralis_Contig158:435144..437763+ (Pylaiella littoralis U1_48)
ATGGATATGGACACCGCCACTGTCTCCACACCCGCGCGCCAAAGCTTGGG
GGCTCGTCCTGCGGTGACACCGACACAATCGGCCAAAAAGGATGAAGACG
AGAGGTGTAAGCGCCGAACCTCCGGACCGCGCGCGGTCGGTACAGACGGT
CAGCAGGCCACACCCGACCTCACGAAGGGGAATGGGCCGAACTACCCTCG
CGGGTTTCAACCAGGTAGGGAgGGAAGCGACGGGGCGAAGCTACCTGTGT
ACATGTTCCTCCAGCAAGGCGTCCTGGAGGAGGGCGTGCAAGAACACTGC
ACCGCTGGAGTGCACGCTCGTGTTGCCCGGTGGTGGTCTAGCAACGCGGA
CAGCAACGAGGACCGCGCTTTTACTGGGAACTGCACCTCGACCGGCAAAA
TCTTGGCTGCGGTGGTCAAGGACGAGGACCTCGCCTGCTACTACGGACTC
AAGAAAAGCTTCTCTGGTAGGTCCACGACGTGGGTGCTGTCGAGGTCGTC
ATTGGCACGAGAGCGAGCCGATGCGCAGTGGAGTTTTTGTCTACCGGCAG
GATGGGCGGAGGAGTACGGTGCTGACGGCTCATGGAAGTTCAAGACTAGC
AAGGGTGGAACGCCCGTCTCGGACATTCTCGAAATGAGGTTCGCGCACAT
AAGGGCTGGAATGGGGTGTCACAAGGCTCCTACGGCGTCTCAGGCGGCTC
AAGCTGGAATGCACGGAGATACTTGTCGGCTGTCCCACGGTGAACGGCGT
CGCAATTCGTCGAGATCGGGCGGGCAGCCGTTCGACATCCAACAGGGAGC
AACTCTGCGAGTGGCATTACCTGTTAACGCGGAAGAGCGAGGAGAAGTAG
TGAGAGCCGCCACGTGGCGCAATGCAGACCATGTGTTTGAGACGCGCTCG
GTGTGA
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