mRNA_P-littoralis_Contig158.107.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig158.107.1
Unique NamemRNA_P-littoralis_Contig158.107.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
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BLAST of mRNA_P-littoralis_Contig158.107.1 vs. uniprot
Match: D7FQV3_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FQV3_ECTSI)

HSP 1 Score: 288 bits (738), Expect = 7.300e-97
Identity = 149/198 (75.25%), Postives = 167/198 (84.34%), Query Frame = 1 
Query:    1 AQSAVRRGGRNRTPKDLDVMPSGADKQDDSHDHWQAMEAVWASWGDQEAYDNKMEETKDRRDAAREVHEAIQKKQQEELESASSSTPHVSERQEKVSDGKGEGDIEIYEGVY*KRAELGRLQYYYDKAYVFDPQKIEVVFGETSVKIDGGVHVVKSVDHGKYTLEGRESTITQWQLLKNRCDEGVTLDSDLRRFIIHL 594
            +QSA  RG RNR  +DLD M +GA KQD+ HDHWQA EAVWASW DQEAYD KM ETKDRRDAAR VHEA QK++QEELE+ASS T HV+ERQEKVSDG GE DIEI+EGVY KR E+  L+YYYDK+Y+FDP+ I VVFGETSV+IDGGVHVVKSVD GKY LEG +STITQW+LL NRC EGVTLD+DLRRFI HL
Sbjct:    3 SQSATGRGQRNRRARDLDAMQTGAGKQDEDHDHWQAREAVWASWADQEAYDKKMAETKDRRDAARTVHEAKQKEKQEELEAASS-TSHVTERQEKVSDGNGEDDIEIFEGVYHKRTEIRHLRYYYDKSYMFDPKSIGVVFGETSVEIDGGVHVVKSVDRGKYALEGPDSTITQWELLNNRCGEGVTLDTDLRRFITHL 199
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BLAST of mRNA_P-littoralis_Contig158.107.1 vs. uniprot
Match: D8LJ27_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LJ27_ECTSI)

HSP 1 Score: 283 bits (723), Expect = 3.720e-89
Identity = 146/198 (73.74%), Postives = 164/198 (82.83%), Query Frame = 1 
Query:    1 AQSAVRRGGRNRTPKDLDVMPSGADKQDDSHDHWQAMEAVWASWGDQEAYDNKMEETKDRRDAAREVHEAIQKKQQEELESASSSTPHVSERQEKVSDGKGEGDIEIYEGVY*KRAELGRLQYYYDKAYVFDPQKIEVVFGETSVKIDGGVHVVKSVDHGKYTLEGRESTITQWQLLKNRCDEGVTLDSDLRRFIIHL 594
            +QSA RRGGRNRT      MP+GADK+D  HDHW+  EAVWA WGDQEAYD KM ETK++RDAAREVHEA QKK+Q ELE+ASS TPHV+ERQE+ SDG GEGDIEI +GVY KRAEL  LQYYYDK+Y FDP+ I VV  ET VKID  +H VKSVDHGKYTLEGRES ITQW+LL+NRCDE VTLD+DLRRFI+HL
Sbjct:    3 SQSAARRGGRNRTATVPGKMPTGADKKDQDHDHWRKREAVWAGWGDQEAYDKKMAETKEKRDAAREVHEANQKKRQAELEAASS-TPHVTERQEEGSDGNGEGDIEISDGVYYKRAELRTLQYYYDKSYAFDPKNIGVVLSETGVKIDSRIHAVKSVDHGKYTLEGRESRITQWELLENRCDERVTLDTDLRRFILHL 199
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BLAST of mRNA_P-littoralis_Contig158.107.1 vs. uniprot
Match: A0A6H5K2A3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K2A3_9PHAE)

HSP 1 Score: 206 bits (525), Expect = 3.620e-58
Identity = 139/337 (41.25%), Postives = 161/337 (47.77%), Query Frame = 1 
Query:   16 RRGGRNRTPKDLDVMPSGADKQDDSHDHWQAMEAVWASWGDQEAYDNKMEETKDRRDAAREVHEAIQKKQQEELESASSSTPHVSERQEKVSDG------------------------------------------------------------------------------------------------------------------------------------------------KGEGDIEIYEGVY*KRAELGRLQYYYDKAYVFDPQKIEVVFGETSVKIDGGVHVVKSVDHGKYTLEGRESTITQWQLLKNRCDEGVTLDSDLRRFIIHL 594
            RR GRNRT      MP+GADK+D  HDHW+  EA WA WG Q+A D KM +TK++RD AREVHEA QKK++E+LE A+SSTPHV+ERQE+ S G                                                                                                                                                +G+GDIEI +GVY KRAEL  LQYYYDK+YV DPQ I VVFG+T VKIDGGVHVVKSVDHGKYTLEGRESTITQW+LL+ RCDEGVTL +DLRRFI+HL
Sbjct:   20 RRSGRNRTATVPGKMPTGADKKDQDHDHWRKREAEWAGWGVQKASDKKMADTKEKRDDAREVHEANQKKREEDLE-ATSSTPHVTERQEEGSLGNRAKTTAAAIPEDNRLEAMDVDGVGGDVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGTWNGGGPVRKVAYKQRPKLYASTKIIARLVEPWQDGSREWMERKRESGGEKAQERDGTLSRAANEPRGNTSIPVMVKLLGDGLCTDQGKGDIEISDGVYYKRAELRNLQYYYDKSYVLDPQNIWVVFGQTRVKIDGGVHVVKSVDHGKYTLEGRESTITQWELLEKRCDEGVTLYTDLRRFILHL 355
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BLAST of mRNA_P-littoralis_Contig158.107.1 vs. uniprot
Match: A0A6H5JU26_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JU26_9PHAE)

HSP 1 Score: 78.2 bits (191), Expect = 5.740e-16
Identity = 38/57 (66.67%), Postives = 44/57 (77.19%), Query Frame = 1 
Query:   58 MPSGADKQDDSHDHWQAMEAVWASWGDQEAYDNKMEETKDRRDAAREVHEAIQKKQQ 228
            MP+GA K+D  HDHW   EAVWA WG QEAYD KM ETK+RRDAARE HE  +K++Q
Sbjct:    1 MPTGAGKKDQDHDHWPLREAVWAGWGYQEAYDKKMAETKERRDAAREAHEIKRKEKQ 57
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig158.107.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
D7FQV3_ECTSI7.300e-9775.25Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D8LJ27_ECTSI3.720e-8973.74Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5K2A3_9PHAE3.620e-5841.25Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JU26_9PHAE5.740e-1666.67Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig158contigP-littoralis_Contig158:373292..374534 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size594
Hectar predicted targeting categoryother localisation
Exons2
Cds size282
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789756.5729682-UTR-P-littoralis_Contig158:373291..3735461680789756.5729682-UTR-P-littoralis_Contig158:373291..373546Pylaiella littoralis U1_48UTRP-littoralis_Contig158 373292..373546 -
1680789756.6041653-UTR-P-littoralis_Contig158:374477..3745341680789756.6041653-UTR-P-littoralis_Contig158:374477..374534Pylaiella littoralis U1_48UTRP-littoralis_Contig158 374478..374534 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789756.582438-CDS-P-littoralis_Contig158:373546..3735851680789756.582438-CDS-P-littoralis_Contig158:373546..373585Pylaiella littoralis U1_48CDSP-littoralis_Contig158 373547..373585 -
1680789756.5949-CDS-P-littoralis_Contig158:374234..3744771680789756.5949-CDS-P-littoralis_Contig158:374234..374477Pylaiella littoralis U1_48CDSP-littoralis_Contig158 374235..374477 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig158.107.1prot_P-littoralis_Contig158.107.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig158 373547..374477 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig158.107.1

>prot_P-littoralis_Contig158.107.1 ID=prot_P-littoralis_Contig158.107.1|Name=mRNA_P-littoralis_Contig158.107.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=94bp
MPSGADKQDDSHDHWQAMEAVWASWGDQEAYDNKMEETKDRRDAAREVHE
AIQKKQQEELESASSSTPHVSERQEKVSDGKGEGDIEIYEGVY*
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mRNA from alignment at P-littoralis_Contig158:373292..374534-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig158.107.1 ID=mRNA_P-littoralis_Contig158.107.1|Name=mRNA_P-littoralis_Contig158.107.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=1243bp|location=Sequence derived from alignment at P-littoralis_Contig158:373292..374534- (Pylaiella littoralis U1_48)
GCACAGAGTGCCGTAAGGCGAGGTGGAAGAAACCGTACGCCCAAAGATCT
GGATGTCATGCCGTCCGGAGCCGACAAGCAAGATGATTCCCACGATCACT
GGCAAGCGATGGAGGCGGTGTGGGCAAGCTGGGGTGATCAGGAGGCTTAT
GACAACAAGATGGAAGAGACGAAGGATCGGCGCGACGCGGCGCGCGAGGT
GCACGAGGCTATACAGAAGAAACAACAGGAGGAGTTGGAGTCTGCTTCTT
CTTCAACACCCCATGTGTCCGAGAGACAGGAGAAGGTTTCCGACGGAAAG
GTGAGAAAAGTGGTTTGTTAACGATACGATCAAACAACGCACGTTGCCGC
CGCACATCGGCTGCGCTTGTGTACGCCACCGTATTTTGCTCCGCCTTTCG
CTCACGTTGGCCCCGTCTCTAAAAAAAACAATACCAGGTGAAGAGGGCGG
TGGGCTCGGATCGGACAGGGGAGCGAAAAAGAGCGAAAACAACGGCTGCT
CCGACTCCCGGAGACAATGGTCTCGAGACCATGGACGTTGGTGACTTTGG
TGGCGTTGGCGGCGACTTTGGTGGCGACTTTGGTGACGGTGGCAGCGGTG
ACGACAGTGAGAGCTGGGAGGACGGTGAGGGCGATGGTAGTGGTGGCACC
GGCGGAATGGGTGGCAGCGGTGGCGGCGGTGGAGGTAGTAGAACCGGTGG
TGGCAGCGGCCCCGTGCGGAAGGTCGCGTACAAAAAACGACCAAAGTTGT
ACTCTTCTACCAAAATAGTCGCACGCCTGGTTAACCCGTGGAATGACAAA
AGTCGCGAGTGGATGGAAAGCAACAGAGAATCGGCATGTGAAAAAGCTAC
AGTGAGGGTACGTTCGACCGCACAGCAAATGAACCCAATGGAAACACTTC
GATACCGGTCTTGGTCGAACTACTAAGTGGTGGCCTGTGTGCTGAACAGG
GAGAGGGTGATATCGAGATCTATGAAGGGGTGTACTAGAAGCGCGCCGAG
CTTGGGCGTTTGCAGTATTACTACGACAAGGCGTACGTGTTCGACCCGCA
GAAAATCGAAGTCGTTTTCGGCGAGACGAGTGTCAAGATCGATGGTGGGG
TCCATGTGGTGAAATCAGTCGATCACGGCAAATACACACTGGAAGGTCGG
GAATCCACAATCACCCAGTGGCAGCTCCTAAAAAACCGGTGCGATGAGGG
GGTGACACTGGACAGCGACCTCCGGCGGTTCATCATCCATCTA
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Coding sequence (CDS) from alignment at P-littoralis_Contig158:373292..374534-

>mRNA_P-littoralis_Contig158.107.1 ID=mRNA_P-littoralis_Contig158.107.1|Name=mRNA_P-littoralis_Contig158.107.1|organism=Pylaiella littoralis U1_48|type=CDS|length=282bp|location=Sequence derived from alignment at P-littoralis_Contig158:373292..374534- (Pylaiella littoralis U1_48)
ATGCCGTCCGGAGCCGACAAGCAAGATGATTCCCACGATCACTGGCAAGC
GATGGAGGCGGTGTGGGCAAGCTGGGGTGATCAGGAGGCTTATGACAACA
AGATGGAAGAGACGAAGGATCGGCGCGACGCGGCGCGCGAGGTGCACGAG
GCTATACAGAAGAAACAACAGGAGGAGTTGGAGTCTGCTTCTTCTTCAAC
ACCCCATGTGTCCGAGAGACAGGAGAAGGTTTCCGACGGAAAGGGAGAGG
GTGATATCGAGATCTATGAAGGGGTGTACTAG
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