mRNA_P-littoralis_Contig158.105.1 (mRNA) Pylaiella littoralis U1_48
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Overview
Homology
BLAST of mRNA_P-littoralis_Contig158.105.1 vs. uniprot
Match: A0A6H5J7J9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J7J9_9PHAE) HSP 1 Score: 121 bits (303), Expect = 8.430e-30 Identity = 68/103 (66.02%), Postives = 78/103 (75.73%), Query Frame = 1
Query: 1 MGPFLGVCVGLLAAVAQTQELQNCSVDTTPLTVGSTEDADTLADSLECSNGDAFAVEWVGEVFVAATTIRVTSGTSLNIAGAGPGAIADGRDITQLFYVDEGS 309
MG F + V LLA +A QELQ C++DT LTVGS+ED L L CSNGD F+VEWVG+VFV TIR+TSGTSLNI G GPGAIADG++ITQLFYVD GS
Sbjct: 1 MGLFEVLFVCLLAVIAPAQELQECTLDTGSLTVGSSEDVADLIGFLNCSNGD-FSVEWVGDVFVT-ETIRITSGTSLNITGDGPGAIADGQNITQLFYVDGGS 101
BLAST of mRNA_P-littoralis_Contig158.105.1 vs. uniprot
Match: A0A6H5L4F7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L4F7_9PHAE) HSP 1 Score: 117 bits (292), Expect = 2.560e-28 Identity = 71/104 (68.27%), Postives = 76/104 (73.08%), Query Frame = 1
Query: 1 MGPFLGVCVGLLAAVAQTQELQNCSVDTTPLTVGSTEDADTLADSL-ECSNGDAFAVEWVGEVFVAATTIRVTSGTSLNIAGAGPGAIADGRDITQLFYVDEGS 309
MG F VC+GLLAAVAQTQ LQNCSVDT+P+ V STEDA LA S+ CSNGD AV WVGEV V TI V GTSLNI GAGPGAIADG TQ+F D GS
Sbjct: 1 MGLFQVVCMGLLAAVAQTQVLQNCSVDTSPVMVASTEDAAALAASIIGCSNGD-IAVAWVGEVVVE-ETIFVIGGTSLNITGAGPGAIADGGGETQVFIADGGS 102
BLAST of mRNA_P-littoralis_Contig158.105.1 vs. uniprot
Match: A0A6H5L9I1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L9I1_9PHAE) HSP 1 Score: 107 bits (266), Expect = 5.480e-26 Identity = 62/96 (64.58%), Postives = 71/96 (73.96%), Query Frame = 1
Query: 1 MGPFLGVCVGLLAAVAQTQELQNCSVDTTPLTVGSTEDADTLADSLECSNGDAFAVEWVGEVFVAATTIRVTSGTSLNIAGAGPGAIADGRDITQL 288
MG VC+G +AAVA++QELQ C+V LTVGST DAD LA+S+ CSNGD F V+W EVFV TTIRV+ GTSLNI G GPGAIADG TQL
Sbjct: 1 MGLIQVVCMGYIAAVARSQELQECNVANRSLTVGSTGDADDLANSVICSNGD-FNVQWDEEVFVT-TTIRVSDGTSLNITGTGPGAIADGGGSTQL 94
BLAST of mRNA_P-littoralis_Contig158.105.1 vs. uniprot
Match: D7G1E0_ECTSI (EsV-1-12 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G1E0_ECTSI) HSP 1 Score: 104 bits (260), Expect = 5.410e-24 Identity = 63/103 (61.17%), Postives = 74/103 (71.84%), Query Frame = 1
Query: 1 MGPFLGVCVGLLAAVAQTQELQNCSVDTTPLTVGSTEDADTLADSLECSNGDAFAVEWVGEVFVAATTIRVTSGTSLNIAGAGPGAIADGRDITQLFYVDEGS 309
MG V +G +AAVA++QELQ CSV T+ TV TED+ LA+S+ CSNGD F V+W EVFV AT IRV+ GTSLNI G GPGAIADG TQLF V+ GS
Sbjct: 197 MGLIQVVSMGYMAAVARSQELQECSVVTSFRTVSRTEDSADLANSVLCSNGD-FIVQWDEEVFVTAT-IRVSDGTSLNITGTGPGAIADGGGSTQLFVVEGGS 297
BLAST of mRNA_P-littoralis_Contig158.105.1 vs. uniprot
Match: A0A6H5KX12_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KX12_9PHAE) HSP 1 Score: 96.7 bits (239), Expect = 3.670e-21 Identity = 54/95 (56.84%), Postives = 71/95 (74.74%), Query Frame = 1
Query: 25 VGLLAAVAQTQELQNCSVDTTPLTVGSTEDADTLADSLECSNGDAFAVEWVGEVFVAATTIRVTSGTSLNIAGAGPGAIADGRDITQLFYVDEGS 309
+GLLA VA++Q LQ+CS+D + + +T+ A LA +L +G +V WVGEV VA TIRVT+G SLNI GAGPGA+ADG+++TQLFYVD GS
Sbjct: 10 IGLLAPVARSQGLQDCSLDASTFIMDTTDQATLLATALGFLDG-GLSVCWVGEVIVA-DTIRVTNGKSLNITGAGPGAVADGQNVTQLFYVDGGS 102
BLAST of mRNA_P-littoralis_Contig158.105.1 vs. uniprot
Match: A0A6H5JL43_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JL43_9PHAE) HSP 1 Score: 73.9 bits (180), Expect = 3.370e-13 Identity = 40/59 (67.80%), Postives = 46/59 (77.97%), Query Frame = 1
Query: 133 SLECSNGDAFAVEWVGEVFVAATTIRVTSGTSLNIAGAGPGAIADGRDITQLFYVDEGS 309
S+ +NGD F+V WVGE+FVA TIRV +GTSLN+ GAGPGAIADG TQLF VD GS
Sbjct: 21 SILYANGD-FSVRWVGEIFVA-ETIRVINGTSLNVTGAGPGAIADGSGSTQLFAVDGGS 77
BLAST of mRNA_P-littoralis_Contig158.105.1 vs. uniprot
Match: D8LHW0_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LHW0_ECTSI) HSP 1 Score: 65.1 bits (157), Expect = 4.200e-10 Identity = 34/44 (77.27%), Postives = 37/44 (84.09%), Query Frame = 1
Query: 178 GEVFVAATTIRVTSGTSLNIAGAGPGAIADGRDITQLFYVDEGS 309
GEVFV TIRVT+GTSLNI GAGP AIADG+D T+LFYVD GS
Sbjct: 7 GEVFVN-ETIRVTNGTSLNITGAGPSAIADGQDTTRLFYVDGGS 49 The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig158.105.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 7
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_P-littoralis_Contig158.105.1 >prot_P-littoralis_Contig158.105.1 ID=prot_P-littoralis_Contig158.105.1|Name=mRNA_P-littoralis_Contig158.105.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=103bp MGPFLGVCVGLLAAVAQTQELQNCSVDTTPLTVGSTEDADTLADSLECSNback to top mRNA from alignment at P-littoralis_Contig158:365703..366011+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_P-littoralis_Contig158.105.1 ID=mRNA_P-littoralis_Contig158.105.1|Name=mRNA_P-littoralis_Contig158.105.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=309bp|location=Sequence derived from alignment at P-littoralis_Contig158:365703..366011+ (Pylaiella littoralis U1_48)back to top Coding sequence (CDS) from alignment at P-littoralis_Contig158:365703..366011+ >mRNA_P-littoralis_Contig158.105.1 ID=mRNA_P-littoralis_Contig158.105.1|Name=mRNA_P-littoralis_Contig158.105.1|organism=Pylaiella littoralis U1_48|type=CDS|length=309bp|location=Sequence derived from alignment at P-littoralis_Contig158:365703..366011+ (Pylaiella littoralis U1_48)back to top |