mRNA_P-littoralis_Contig158.99.4 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig158.99.4
Unique NamemRNA_P-littoralis_Contig158.99.4
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
[Close]
BLAST of mRNA_P-littoralis_Contig158.99.4 vs. uniprot
Match: D8LN33_ECTSI (Putative subunit of the Anaphase Promoting Complex n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LN33_ECTSI)

HSP 1 Score: 351 bits (901), Expect = 1.290e-106
Identity = 189/226 (83.63%), Postives = 202/226 (89.38%), Query Frame = 1 
Query: 1279 ASEDPRVARIEQLRELTKSCLEENMSDTAAYYADKLVTFSNFDRGAVLLLAKAQFACGAYLRTVHLLAQHRLLDYADNFGLRACHLAARSLRAADKTEESVSLLEKVLGHTDAHAEEVKARAKATRSRESGIAAANRSNST-SGLESESLPVTAGVDVLAALCCLRGQAYANLDNRPRAAVWLRTALEIDARCVEALQCLTRWHLLSIEDQASMVSGLDYGKQDEE 1953
            A+EDP+ ARIEQLRELTK+CLEENMSDTAAYYADKLVTFSNFDR AVLLLAKAQFACGAYLRTVHLLAQHRLLDYADNFGLRACHLAARSLRAA+KTEESVSLLEKVLGHTD HAEEVKARAKA RS  +  AA   +N   SG  +   P   GVDVLAALCCLRGQAYA LDNRPRAAVWLRTALEIDARCVEALQCLTRWHLLSI++QASMVSGL+YG++ +E
Sbjct:  128 ATEDPKAARIEQLRELTKNCLEENMSDTAAYYADKLVTFSNFDREAVLLLAKAQFACGAYLRTVHLLAQHRLLDYADNFGLRACHLAARSLRAAEKTEESVSLLEKVLGHTDDHAEEVKARAKAARSGVAAAAAVPGANGAGSGAVAAECPAP-GVDVLAALCCLRGQAYAYLDNRPRAAVWLRTALEIDARCVEALQCLTRWHLLSIDEQASMVSGLEYGEEQQE 352
[Close]
BLAST of mRNA_P-littoralis_Contig158.99.4 vs. uniprot
Match: A0A6H5JPV4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JPV4_9PHAE)

HSP 1 Score: 342 bits (876), Expect = 9.400e-104
Identity = 184/227 (81.06%), Postives = 201/227 (88.55%), Query Frame = 1 
Query: 1279 ASEDPRVARIEQLRELTKSCLEENMSDTAAYYADKLVTFSNFDRGAVLLLAKAQFACGAYLRTVHLLAQHRLLDYADNFGLRACHLAARSLRAADKTEESVSLLEKVLGHTDAHAEEVKARAKATRSRESGIAAA--NRSNSTSGLESESLPVTAGVDVLAALCCLRGQAYANLDNRPRAAVWLRTALEIDARCVEALQCLTRWHLLSIEDQASMVSGLDYGKQDEE 1953
            A+EDP+ ARIEQLR+LTK+CLEENMSDTAAYYADKLVTFSNFDR AVLLLAKAQFACGAYLRTVHLLAQHRLLDYADNFGLRACHLAARSLRAA+KTEESVSLLEKVLGH+D HA EVKARAK  RS   G+ AA    + + SG  +   P   GVDVLAALCCLRGQAYA LDNRPRAAVWLRTALEIDARCVEALQCLTRWHLLSI++QAS+VSGL+YG++ +E
Sbjct:  189 ATEDPKAARIEQLRKLTKNCLEENMSDTAAYYADKLVTFSNFDREAVLLLAKAQFACGAYLRTVHLLAQHRLLDYADNFGLRACHLAARSLRAAEKTEESVSLLEKVLGHSDDHAVEVKARAKVARS---GVPAAVPGANGADSGAGAAECPAP-GVDVLAALCCLRGQAYAYLDNRPRAAVWLRTALEIDARCVEALQCLTRWHLLSIDEQASLVSGLEYGEEQQE 411
[Close]
BLAST of mRNA_P-littoralis_Contig158.99.4 vs. uniprot
Match: A0A835ZAK2_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZAK2_9STRA)

HSP 1 Score: 112 bits (281), Expect = 3.560e-22
Identity = 85/218 (38.99%), Postives = 107/218 (49.08%), Query Frame = 1 
Query: 1318 RELTKSCLEENMSDTAAYYADKLVTFSNFDRGAVLLLAKAQFACGAYLRTVHLLAQHRLL----DYADNF-GLRACHLAARSLRAADKTEESVSLLEKVLGHTDAHAEEVKARAKATRSRESGIA---AANRSNSTSGLESESLPVTAGVDVLAALCCLRGQAYANLDNRPRAAVWLRTALEIDARCVEALQCLTRWHLLSIEDQASMVSGLDYGKQD 1947
            R L   CL+   +  AA+YADK VT S       L LA+A  A GA+ R  H+L  H LL    D    + G  AC LAAR L AA + ++ + LLE+V+G  DA A  V AR               AA R                 V  LAALCCLRG  Y  +D+R RA VWLR AL  D +CV+AL  L   HLLS   Q ++++ L +   D
Sbjct:  114 RSLADDCLQGGSAAAAAFYADKAVTLSGGTAEDALRLARALAAEGAHRRAAHVLEAHGLLMLSADGGGGYSGAEACALAARCLAAAGRADDCLKLLERVMGEEDADAAAVVARXXXXXXXXXXXXXXXAAGR--------------VGRVHPLAALCCLRGSMYVEVDSRARAVVWLRAALAADYKCVDALHMLVSRHLLSAPQQEALLASLAFAPCD 317
[Close]
BLAST of mRNA_P-littoralis_Contig158.99.4 vs. uniprot
Match: D0VFU6_MEDTR (Anaphase promoting complex protein n=11 Tax=50 kb inversion clade TaxID=2231393 RepID=D0VFU6_MEDTR)

HSP 1 Score: 93.2 bits (230), Expect = 3.390e-16
Identity = 65/219 (29.68%), Postives = 116/219 (52.97%), Query Frame = 1 
Query: 1294 RVARIEQLRELTKSCLEENMSDTAAYYADKLVTFSNFDRGAVLLLAKAQFACGAYLRTVHLLAQHRLLDYADNFGLRACHLAARSLRAADKTEESVSLLEKVLGHTDAHAEEVKARAKATRSRESGIAAANRSNSTSGLESESLPVTAG-VDVLAALCCLRGQAYANLDNRPRAAVWLRTALEIDARCVEALQCLTRWHLLSIEDQASMVSGLDYGKQD 1947
            R   IE+LRE+ + C+ +++  +A ++ADK+ TF+N D   + + A++ F    Y R  HLL   +++       LR  +LAA+ L+  ++  + +S+L           EEVK                +   + S   +  L    G +++ AA+C LRG+AY  L+NR +A  W + A++ D  C EAL+CL   H+L+ +++A+++S L +G +D
Sbjct:    2 REQEIEKLREVVRDCMSKHLYSSAIFFADKVATFTN-DPADIYMHAQSLFLGHHYRRAFHLLNASKIVLR----DLRFRYLAAQCLQELNEWNQCLSML----------GEEVKV---------------DEHGNLSNAANIYLDKDRGEINITAAICFLRGKAYEALENRSQARSWYKAAIKADPLCYEALECLIENHMLTCDEEANLISSLQFGSED 190
[Close]
BLAST of mRNA_P-littoralis_Contig158.99.4 vs. uniprot
Match: A0A383WBY8_TETOB (Uncharacterized protein n=2 Tax=Tetradesmus obliquus TaxID=3088 RepID=A0A383WBY8_TETOB)

HSP 1 Score: 91.7 bits (226), Expect = 1.310e-15
Identity = 69/215 (32.09%), Postives = 108/215 (50.23%), Query Frame = 1 
Query: 1309 EQLRELTKSCLEENMSDTAAYYADKLVTFSNFDRGAVLLLAKAQFACGAYLRTVHLLAQHRLLDYADNFGLRACHLAARSLRAADKTEESVSLLEKVLGHTDAHAEEVKARAKATRSRESGIAAANRSNSTSGLESESLPVTAGVDV--LAALCCLRGQAYANLDNRPRAAVWLRTALEIDARCVEALQCLTRWHLLSIEDQASMVSGLDYGKQD 1947
            +QLR L + C+ +++  TA +YADKLVT + +  G V L+A+  F  G + R V LL  H L++      +R  +LAA+SL A D  +E ++LL    G  +   +E+          +  +            + +  P   G+DV   AA+C LRG+A+  LDNR RA     +AL  D  C EA   L   H+LS  ++ +++  L +  QD
Sbjct:    6 DQLRSLVQDCIAKHLYSTAVFYADKLVTLTQYAPGDVYLVAQTYFVSGQHRRAVMLLKHHGLME-----DVRFRYLAAKSLAAVDDWDEVLALL----GDGELDDDEL----------QDAVVCEXXXXXXXXAQQQRQP---GLDVSTYAAICLLRGKAFEALDNRQRAIACYTSALHADPFCQEAFAALVDNHMLSNSEELALLGSLPFRPQD 198
[Close]
BLAST of mRNA_P-littoralis_Contig158.99.4 vs. uniprot
Match: A0A2V0NXE8_9CHLO (Anaphase-promoting complex subunit 6 n=1 Tax=Raphidocelis subcapitata TaxID=307507 RepID=A0A2V0NXE8_9CHLO)

HSP 1 Score: 89.0 bits (219), Expect = 1.070e-14
Identity = 67/215 (31.16%), Postives = 105/215 (48.84%), Query Frame = 1 
Query: 1300 ARIEQLRELTKSCLEENMSDTAAYYADKLVTFSNFDRGAVLLLAKAQFACGAYLRTVHLLAQHRLLDYADNFGLRACHLAARSLRAADKTEESVSLLEKVLGHTDAHAEEVKARAKATRSRESGIAAANRSNSTSGLESESLPVTAGVDVLAALCCLRGQAYANLDNRPRAAVWLRTALEIDARCVEALQCLTRWHLLSIEDQASMVSGLDYGKQ 1944
            A    LR L + C+ +++  TA ++ADKLV+ +++  G V LLA+  +    + R   LL QH L++      +R  +LAA+      + +E ++LL       D   +++ A   +     +  AAA R  +T                  A+C LRG+AY  LDNR  AA W R AL +D  C EAL  L   HLL+  ++ ++V GL  G +
Sbjct:   10 AHAASLRALVQDCIAKHLYGTAVFFADKLVSLTDYGAGDVFLLAQTYYVSHQFRRAAMLLRQHGLME-----DVRFRYLAAKCFAEVGEWDEVLALL------ADGEPDDLAA---SQSDAPAAAAAAGREIATPS----------------AVCLLRGRAYEALDNRAAAAQWYRAALSLDPFCEEALSALLDHHLLTNAEELALVDGLPLGPE 194
[Close]
BLAST of mRNA_P-littoralis_Contig158.99.4 vs. uniprot
Match: A0A6I9S2U9_ELAGV (anaphase-promoting complex subunit 6 n=2 Tax=Cocoseae TaxID=169705 RepID=A0A6I9S2U9_ELAGV)

HSP 1 Score: 88.2 bits (217), Expect = 1.350e-14
Identity = 66/220 (30.00%), Postives = 114/220 (51.82%), Query Frame = 1 
Query: 1294 RVARIEQLRELTKSCLEENMSDTAAYYADKLVTFSNFDRGAVLLLAKAQFACGAYLRTVHLLAQ--HRLLDYADNFGLRACHLAARSLRAADKTEESVSLLEKVLGHTDAHAEEVKARAKATRSRESGIAAANRSNSTSGLESESLPVTAGVDVLAALCCLRGQAYANLDNRPRAAVWLRTALEIDARCVEALQCLTRWHLLSIEDQASMVSGLDYGKQD 1947
            R   +++LR + + C+ +++  +A ++ADK V  +  D   + + A+A F    Y R +HLL+   H LL       LR  +LAA+ L    +  + +++L       DA  +E             G   A + NS   L+ +       ++  AA+C LRG+AY  LDNR +A +W + A++ D  C EAL+CL   ++L+ E+++S++S L +GK D
Sbjct:    2 REEEVDRLRGVVRDCVSKHLYSSAIFFADK-VALATGDPADIYMQAQALFLGRHYRRALHLLSSSPHVLLQ-----DLRFRYLAAKCLEELKEWHQCLTML------GDAKVDE------------DGNVHAQKDNSAMYLDKDGEDHE--INTTAAICFLRGKAYEALDNRAQARLWYKAAVKADPLCYEALECLVDNYMLTCEEESSLLSSLQFGKDD 195
[Close]
BLAST of mRNA_P-littoralis_Contig158.99.4 vs. uniprot
Match: A0A5E4EWY3_PRUDU (PREDICTED: cell division cycle n=2 Tax=Prunus TaxID=3754 RepID=A0A5E4EWY3_PRUDU)

HSP 1 Score: 86.7 bits (213), Expect = 2.560e-14
Identity = 66/220 (30.00%), Postives = 118/220 (53.64%), Query Frame = 1 
Query: 1294 RVARIEQLRELTKSCLEENMSDTAAYYADKLVTFSNFDRGAVLLLAKAQFACGAYLRTVHLL--AQHRLLDYADNFGLRACHLAARSLRAADKTEESVSLLEKVLGHTDAHAEEVKARAKATRSRESGIAAANRSNSTSGLESESLPVTAGVDVLAALCCLRGQAYANLDNRPRAAVWLRTALEIDARCVEALQCLTRWHLLSIEDQASMVSGLDYGKQD 1947
            R   IE+LR + + C+ +++  +A ++ADK+  F+N D   + + A+A F    Y R  HLL  +Q  L D      LR  +LAA+ L    + ++ + +L+      DA  +E         +++S I   ++     G + E       +++ +A+C LRG+AY  L+NR +A  W + A++ D  C EAL+CL   H+L+ E++AS+++ L +G +D
Sbjct:    2 REEEIEKLRGVVRDCVTKHLYSSAIFFADKVAAFTN-DPADIYMQAQALFLGRHYRRAYHLLNASQIVLRD------LRFRYLAAKCLEELKEWDQCILMLD------DAKVDE---HGNLNETKDSNIMYLDKD----GEDHE-------INISSAICFLRGKAYEALENRVQARHWYKAAIKADPLCYEALECLIENHMLTYEEEASLLASLQFGPED 194
[Close]
BLAST of mRNA_P-littoralis_Contig158.99.4 vs. uniprot
Match: A0A0A0L2G5_CUCSA (Uncharacterized protein n=19 Tax=Cucurbitaceae TaxID=3650 RepID=A0A0A0L2G5_CUCSA)

HSP 1 Score: 87.0 bits (214), Expect = 3.170e-14
Identity = 61/218 (27.98%), Postives = 115/218 (52.75%), Query Frame = 1 
Query: 1294 RVARIEQLRELTKSCLEENMSDTAAYYADKLVTFSNFDRGAVLLLAKAQFACGAYLRTVHLLAQHRLLDYADNFGLRACHLAARSLRAADKTEESVSLLEKVLGHTDAHAEEVKARAKATRSRESGIAAANRSNSTSGLESESLPVTAGVDVLAALCCLRGQAYANLDNRPRAAVWLRTALEIDARCVEALQCLTRWHLLSIEDQASMVSGLDYGKQD 1947
            R   IE+LR + + CL +++  +A ++ADK+  F+  D   + + A+A F    + R  HLL   +++     F     +LAA+ L    + ++ +++L       DA+ +E             G    N+ +S   L+ +       ++++AA C LRG+AY  L+NR +A +W + A++ D  C EAL+CL   H+L+ ++++S++S L +G +D
Sbjct:    4 REEEIEKLRGVVRDCLSKHLYSSAIFFADKVTAFTE-DPADIYMQAQALFLGRHFRRAFHLLNASKIVLRDPRFR----YLAAKCLEELKEWDQCLAML------GDANVDE------------HGNVLDNKDHSGMYLDKDC--EDREINIVAATCFLRGKAYEALENRTQARLWYKAAIKADPLCYEALECLIESHMLTCDEESSLLSSLQFGPED 196
[Close]
BLAST of mRNA_P-littoralis_Contig158.99.4 vs. uniprot
Match: A0A8J4RIU8_9ROSI (Uncharacterized protein n=4 Tax=Fagaceae TaxID=3503 RepID=A0A8J4RIU8_9ROSI)

HSP 1 Score: 87.0 bits (214), Expect = 3.780e-14
Identity = 61/218 (27.98%), Postives = 112/218 (51.38%), Query Frame = 1 
Query: 1294 RVARIEQLRELTKSCLEENMSDTAAYYADKLVTFSNFDRGAVLLLAKAQFACGAYLRTVHLLAQHRLLDYADNFGLRACHLAARSLRAADKTEESVSLLEKVLGHTDAHAEEVKARAKATRSRESGIAAANRSNSTSGLESESLPVTAGVDVLAALCCLRGQAYANLDNRPRAAVWLRTALEIDARCVEALQCLTRWHLLSIEDQASMVSGLDYGKQD 1947
            R   IE+LR + + C+ +++  +A ++ADK+   +N D   + + A+A F    + R  HLL   +++   D   LR  +LAA+ L   +  ++ +S+L     HT+                          NS   L+ +  P  A +++ +A+C LR +AY  L+NR +A +W   A++ D  C EAL+CL   H+L+ +++A+++S L +G +D
Sbjct:    2 REEEIEKLRGVVRDCVSKHLYSSAIFFADKVAALTN-DPADIYMQAQALFLGRHFRRAFHLLNASKIV-LTD---LRFRYLAAKCLEELNDWDQCLSMLNLPHHHTN--------------------------NSLIYLDKD--PAAAEINISSAICFLRAKAYEALENRAQARLWYIAAVKADPLCYEALECLIEKHMLTCDEEATLLSSLQFGPED 186
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig158.99.4 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LN33_ECTSI1.290e-10683.63Putative subunit of the Anaphase Promoting Complex... [more]
A0A6H5JPV4_9PHAE9.400e-10481.06Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A835ZAK2_9STRA3.560e-2238.99Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
D0VFU6_MEDTR3.390e-1629.68Anaphase promoting complex protein n=11 Tax=50 kb ... [more]
A0A383WBY8_TETOB1.310e-1532.09Uncharacterized protein n=2 Tax=Tetradesmus obliqu... [more]
A0A2V0NXE8_9CHLO1.070e-1431.16Anaphase-promoting complex subunit 6 n=1 Tax=Raphi... [more]
A0A6I9S2U9_ELAGV1.350e-1430.00anaphase-promoting complex subunit 6 n=2 Tax=Cocos... [more]
A0A5E4EWY3_PRUDU2.560e-1430.00PREDICTED: cell division cycle n=2 Tax=Prunus TaxI... [more]
A0A0A0L2G5_CUCSA3.170e-1427.98Uncharacterized protein n=19 Tax=Cucurbitaceae Tax... [more]
A0A8J4RIU8_9ROSI3.780e-1427.98Uncharacterized protein n=4 Tax=Fagaceae TaxID=350... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig158contigP-littoralis_Contig158:333339..339185 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog2880.D8LN33
PFAMsANAPC3,TPR_1,TPR_2,TPR_8
Model size1967
Max annot lvl2759|Eukaryota
KEGG koko:K03353
KEGG Pathwayko04110,ko04111,ko04113,ko04114,ko04120,ko04914,ko05166,map04110,map04111,map04113,map04114,map04120,map04914,map05166
KEGG ModuleM00389
Hectar predicted targeting categoryother localisation
Exons6
Evalue2.12e-107
EggNOG OGsKOG1173@1|root,KOG1173@2759|Eukaryota
Descriptioncell division
Cds size1965
COG categoryO
BRITEko00000,ko00001,ko00002,ko01009,ko03036,ko04121
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig158.99.4prot_P-littoralis_Contig158.99.4Pylaiella littoralis U1_48polypeptideP-littoralis_Contig158 333339..339183 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789756.1919725-CDS-P-littoralis_Contig158:333338..3346471680789756.1919725-CDS-P-littoralis_Contig158:333338..334647Pylaiella littoralis U1_48CDSP-littoralis_Contig158 333339..334647 +
1680789756.2087762-CDS-P-littoralis_Contig158:335633..3357581680789756.2087762-CDS-P-littoralis_Contig158:335633..335758Pylaiella littoralis U1_48CDSP-littoralis_Contig158 335634..335758 +
1680789756.2233276-CDS-P-littoralis_Contig158:336482..3365951680789756.2233276-CDS-P-littoralis_Contig158:336482..336595Pylaiella littoralis U1_48CDSP-littoralis_Contig158 336483..336595 +
1680789756.2336633-CDS-P-littoralis_Contig158:337381..3374811680789756.2336633-CDS-P-littoralis_Contig158:337381..337481Pylaiella littoralis U1_48CDSP-littoralis_Contig158 337382..337481 +
1680789756.252656-CDS-P-littoralis_Contig158:338178..3384111680789756.252656-CDS-P-littoralis_Contig158:338178..338411Pylaiella littoralis U1_48CDSP-littoralis_Contig158 338179..338411 +
1680789756.2648897-CDS-P-littoralis_Contig158:339098..3391831680789756.2648897-CDS-P-littoralis_Contig158:339098..339183Pylaiella littoralis U1_48CDSP-littoralis_Contig158 339099..339183 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig158.99.4

>prot_P-littoralis_Contig158.99.4 ID=prot_P-littoralis_Contig158.99.4|Name=mRNA_P-littoralis_Contig158.99.4|organism=Pylaiella littoralis U1_48|type=polypeptide|length=655bp
QGQRPSVCAKHPRQPGVYRGKSLKALLVQAPISASVYVESRERETNRFAA
NFPQRCRYKLWMLLPACANATNPSTVPIIYRIFLTVSLNHLTPRVDGGEH
VCSPRRPLWGGGGKTPTTSSHRTPRSSGSGDGGSRSSGTTSGGSSPPCQL
PSKRKRVPTPPGIAVAAAEDGSDSIAVAERGGRASRGGQSEIPPARMRRT
ELLAEPPAAASSSSGGVTTAAAAAAAAAAASAAVVTGSPAAGKKSPTAAA
TTPSPRLSSGGGNSSGSSSRRRGGGPIGRSGARAAAGAGAGGSRDGSGRL
LYGMAPEAGTGSSSTDNSPRRSSIGGSGSSSGSVSGNGKGKGKGKARAKS
RLAIAATSTSASANANGSGIAAAAAAGPGNNGSTSSNSRAGGRGAQRSSS
GDGGQGGGVMGGEEEDEKEEESAAATASEDPRVARIEQLRELTKSCLEEN
MSDTAAYYADKLVTFSNFDRGAVLLLAKAQFACGAYLRTVHLLAQHRLLD
YADNFGLRACHLAARSLRAADKTEESVSLLEKVLGHTDAHAEEVKARAKA
TRSRESGIAAANRSNSTSGLESESLPVTAGVDVLAALCCLRGQAYANLDN
RPRAAVWLRTALEIDARCVEALQCLTRWHLLSIEDQASMVSGLDYGKQDE
EEGEG
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mRNA from alignment at P-littoralis_Contig158:333339..339185+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig158.99.4 ID=mRNA_P-littoralis_Contig158.99.4|Name=mRNA_P-littoralis_Contig158.99.4|organism=Pylaiella littoralis U1_48|type=mRNA|length=5847bp|location=Sequence derived from alignment at P-littoralis_Contig158:333339..339185+ (Pylaiella littoralis U1_48)
CAGGGACAACGCCCGTCAGTTTGTGCAAAACATCCGAGACAACCTGGAGT
ATATCGTGGTAAGTCTCTGAAGGCATTGCTGGTACAAGCGCCGATCTCTG
CGTCGGTGTATGTAGAATCGAGAGAGAGAGAAACAAACCGCTTTGCAGCC
AATTTTCCACAGCGGTGTAGGTACAAACTTTGGATGCTTCTCCCCGCGTG
CGCTAACGCAACCAACCCATCTACCGTACCTATCATATATAGGATATTCC
TCACGGTCTCCCTCAACCACCTCACGCCGCGCGTCGACGGCGGGGAGCAC
GTCTGCTCTCCACGTCGTCCCTTGTGGGGCGGCGGGGGCAAAACTCCTAC
CACGAGTTCACATCGAACCCCTCGTTCGTCCGGTAGCGGCGACGGCGGCT
CCAGAAGCAGCGGCACAACTAGCGGCGGCTCCTCTCCTCCTTGCCAACTT
CCTTCCAAGCGCAAGCGCGTGCCGACACCCCCTGGCATAGCAGTAGCAGC
AGCAGAAGACGGCTCAGACTCTATTGCGGTGGCAGAGAGGGGCGGGAGGG
CGAGCAGAGGAGGGCAGTCAGAGATTCCTCCCGCCCGCATGCGAAGGACA
GAGTTACTGGCGGAGCCCCCAGCTGCTGCGTCGTCGTCTTCCGGTGGTGT
TACCACTGCTGCTGCTGCTGCTGCTGCTGCTGCTGCCGCTTCCGCTGCTG
TAGTTACAGGTTCACCAGCAGCGGGAAAGAAGTCACCGACAGCTGCCGCA
ACGACTCCCAGCCCACGTTTAAGCAGCGGTGGCGGCAACAGCAGTGGCAG
CAGTAGCCGAAGGCGTGGAGGGGGGCCGATAGGCCGAAGCGGAGCAAGGG
CAGCAGCAGGAGCAGGAGCTGGAGGGAGCAGGGACGGCAGCGGTAGGTTG
TTGTATGGCATGGCCCCGGAAGCTGGCACGGGCAGCAGCAGCACCGACAA
CTCTCCGAGACGATCGTCGATCGGTGGGAGCGGCAGCAGCAGCGGTAGTG
TCAGCGGCAACGGCAAGGGGAAAGGGAAAGGGAAAGCGAGAGCCAAGTCT
AGGTTGGCTATCGCTGCCACCAGCACCTCTGCTAGCGCAAATGCCAACGG
AAGCGGCATAGCAGCAGCAGCAGCAGCAGGCCCCGGCAATAATGGAAGCA
CTAGCAGCAATAGTCGTGCTGGTGGCCGGGGCGCCCAACGAAGCAGCAGT
GGCGACGGTGGTCAGGGTGGAGGAGTGATGGGGGGGGAGGAGGAGGATGA
GAAGGAGGAAGAGTCAGCGGCAGCAACAGCGTCCGAAGATCCAAGGGTTG
CCCGCATAGGTATGTTGAGTTTGTACACATGCAGTATTCCTGCGTTCCTC
GATAGCTTCCCGTACCGGGCTCATCTGCCATCATGCTGCTGCTGTGCGTG
GTACATACTGGCTACCCTGTGGACAAACGCTAGGTAGTGTGTTGGTGTGT
CGGGATGAGTGGATTGTGGCTGGATTATAGCCGTCAGCTCGTATTACACG
ACGTGACAATGGTGCATGTTGTCGCTGTTGTCGCGTTGTTACTGCTGCTG
CTGCTGCTGCTGCTGCTGTTGACGTTGCCATTATGCAAAAGTCGATACCA
TATGTGTCGCAATCAAAGAACATATTTTGAAAGCGCTCTGGCATGTGAGG
AATCTGTCGATTGTGGTACAAAACTGCATGTTAGAGTGTCTTTTCAACTT
CAGCGCGCACGTATTTCTACTGCCAACACACTCGTGCTCTCGTACTTTGT
TGTGAGCTTCAGGGGAAAAGCTTAACGCTCCATTGTGAGGGACAGACAGA
CCGACCGGTTTGCGAGCATAGACCGGTTCTCGAGAAGATCTATCTTCAAT
AAAGACAGGACGTATCCTATTGTACGTGAATCATATTGTTGATCTCCTGC
TGTGCATGCATACGGACGCTCGAGGGTGGACGCACCGAACGCCGACGACC
TATCTTTTTGTCGTTTCTCAGTTTCTTTCACCGCAGGAAATAATTATCTC
GCATTTTTTCAGAAAAAGTTTCCGAACTATTTGATGAAGTGATACCATAC
ATATGGATGTACGCCGCTTTTTGGCACCCCCAGCGCAGCGAAATGTTGGG
TTTAGAAATCGTTTCCAACCGATGTATCGAAAAGATGCCACGTTTTGTCG
TGGAATATTCTTCTCCCACCAGCTGCTTGCTACCATGGCGCGCGTCGGTT
GCAAAGGGCGATCGCGGAAGTAGACGAACAGCGATGTTGCTCGCCCTGTT
TCATAGCTCTCGTTTGTGCATGTGCATTGGCTGCATATGATATAGAGCAA
TTGCGGGAGCTGACGAAGAGCTGCTTGGAGGAGAACATGTCGGACACTGC
GGCCTACTACGCGGACAAACTCGTGACTTTCTCCAACTTCGACAGAGGAG
CCGTTCTCCTTCTGGCCAAGGCGAGGAATCGAATCCTTACCTGTGCTCTA
TCCCACTCTTAACGTTGCAGCGTGGCTCAGGCCGACCATTTATCTGGGGG
CAGCTAGTCACTCGCTTTACTGTATCATGTGCATCTTATATGGCTCTTTT
GGCTTGCAGCAAGGATAGTAATGTAGGTCGAGAATACGTGTAGGGAATTA
GAACCTTGCGCACGTGGGCGCCCGAAAGGCTGCGGGCAGCGCTTTGCTTT
GTCAGATGTTTCTTCCCGAAAAAGTATGGGGTTGCGGTAGAAAGGTGTGG
ATGTACTCCACTGCTGCACCGGTATGATACCGGCCGGGCCAATCTTTTGT
CCACGCGTTGACCGAGAAGTCGATATAGTTGCATGTTTGTCGCCCGATAG
ATAAATAGACAGACAGACAGACAGACAGACAGACAAACAGACAGAGACAG
ATGATGAGAGAGAAGCAGAGAGGCAGAGAGAGATAATGAGAGAGAGTGGG
CCCGGGAGGTGTAGAGGTCGAAAACGGACGAGAGGACCACAGAGAAGGGG
TGGATTACGGCTACTACAACCCCACGAAAGGTAAAGGGACCCCGAGTCAG
AGAGAGACGGACAACACAATCGCCTGCTCCAATTGATTCGCCGTTCATCC
ACTCCATCCTCTGCCCCCCCCCCCCCCTCCCCCCCACCTTTATGTCTTTT
TTGGATGCGTGATGGTTCATAACCTGCGCCATTGTTTATCACAGGCACAG
TTTGCCTGCGGAGCGTACCTGCGTACCGTGCACCTGCTGGCGCAGCACCG
CCTGCTGGACTATGCAGACAACTTTGGTCTCAGGGCATGCCATTTGGCTG
CAAGAAGGTGCGAAAAGCGACCCACCGTCTTACTTCGTGTAATGTAAAAG
TATTTACATTGTTGCACATTTTTATTTTCGGTCTGTCGATTCGCGCGCCC
CCCCCCCCTCTCTGTCTTTCTCTCCGCCTCTCCCTTTTGTCAACAGCGAA
CTCTGTTTACTGCTGAGAGTACTGTGAGCCAATGGCCATGAGTCGATCTA
CTTTGTTGTTGCGATTTGTTTTAGCTGTACCATTCACGCGTCGTCGTCGT
CGTCGTCGTCGTCGTCGGCTCGCTCTCCCTCTCTCTCGTCAACTAGGACC
TCTGTATGGCAAGCAGTATTGAATTTCAAGCCAATGACTGTCCGTACCGT
ATCTTTCTTCCGGCCTCACTTGAAATGTGTCGTTCGGGGCTACGCATGAG
CATTCATGCCGCTCGTGTTTTACTCTCAACGCTTGTATTTGTTTTCGTCA
TGCATCGGTTGATTTTGGTCGTGGAGAGATTTTCTGCACTTCTCTGTGAT
GCACCACAGCAAGGTGTGATACTTGTACTTCGAAGTACGTATTACTACTA
GTGTTATTTATATGAACAATTGGACAGGTTGAAAATTTGGGGAAAAAGGG
TTTTGTTATATTCAATTCATATGGAACTTTAAACTGAAAACCAATTATCA
CTTGTACATCTAAATGAACACAAACAATCCTGAAAACAAACACATATAGA
CCGTACATCACCACATAATGTATCGTGTGTCACACTTACGACATATAACT
TTCCGCGATGCGTGGGCTTCGTTTTGTTCACGGCTGCCACCAGCCTAAGA
GCAGCCGACAAGACGGAGGAATCGGTGTCTTTGCTGGAGAAGGTGCTGGG
CCACACCGACGCTCATGCCGAGGAAGTGAAGGCTAGGGCCAAGGTCTGTT
TGTGTGTGTTTGTGTTTGAAATGAAAGGAGGCGTGTGTCCGTGTGTTTGT
TGTGTTCGTGTCGTTTTCGTTTTATTGATGTTGTTTTTTCTCGCCTTCAT
TCATCCCCAACATTTAGCCCTTTGTGTGCGTTTATGTATGTATGTGGATC
CTGTGTGCTATGTGCGCATGTGTGTACAGCAGTAGTATATGTGAGTGTGT
TTGTGTGTTTGTGTCTGTCTGTGAAAGTAACTGCTTTTATTGATCATCTT
GGCTTGTGATAAATCGCCGCTGATCGGCGTACCGCCAATCGAAATCCGTC
AGGCACGGGTCTGGCAGGGCCATGGTGTGTGCATGTGTGTTGTTGTTGTT
GTCGTTGTTGTTGTTGTTGTTGTTGTTGTTGTTGTTGTTGTCGTTGTCGT
TGTTATTTTTGTTGTTGTGGTTGTTATTCTGTTACTACTGTTGGTTCTCA
CAGTTTCTCGCCCACAGAACCTGGCACGAATGAATGTTAATATTCCTCTT
GTGCCTGTGTATCCGTGTGTGCTTCGTGTGGTGAGCCCTTTATGCTCTCG
TCCCGCACTTTGCATCACACCTTGTCACCTAACACTCCCTGGAAGTTGAA
ATAATCGATACGCATGAGTCGTCGTCAAATCTCTCTTGGCTTGTGGCTTG
ACCTGATTTTTGACGCAACGTTTTTGCTTTCCTTTCAAAGGCGACGAGAT
CGAGGGAATCGGGAATCGCTGCCGCCAATAGGAGCAATTCGACCTCAGGG
CTGGAGTCGGAGTCTCTGCCCGTTACGGCCGGCGTGGACGTGCTCGCCGC
TCTGTGCTGCCTGAGGGGCCAGGCGTACGCCAACCTGGACAACAGGCCAA
GGGCGGCGGTGTGGCTCAGGACGGCTCTCGAGATTGACGCGCGCTGCGTG
GAAGCCCTGCAGTGCTTGACTCGGTTCGTCGAGCGTGGTGTGGCGTGGCG
TGGGGTGGGGTGGGGTGTGGTGGGGTGGTGTGGTGAGGTGTGGGGTAGTG
AAGTGCAGGGTGCAGTGGTGCAATGCTCTACACCGCAACAGCAACAACAC
ACCGGCCATGGAGCAAGAGCTTTTGCAGTACCAATGAATGAATGAATGGC
AACGTCAGCTTCCAGGTGGTGTTGTTTTGTCTCTTTTGCAATGTAATTTC
GTACGCCATTATATCGCTAGACCTCTGATCTGGAAAAAAAATATCGACCT
GCTTTTTTCCGAGCGGGGTGATTACCTTTCTTACTAGCAAGAAGCTCACA
TCGCACGAATTGCAATATACATCCATGAGATGACCAAACCGAGGACCAAA
CGAGCCCCAAGATGGAACGAATCGAACGCGCTCGTTCCCTGTTTTGTCCG
TGTCACGCGACCAATGGTTGTGTGGTAAAGGAATGTCTGTGCGTCCTGAA
CGAATGAACATCGACTGCTGTTGGCGAGCTCGAACGAATGGGGTCGAGCC
TATTTTTGTTGGTCGAAACGTGGATACGTTGTGAACGATCTCATGGCTTG
AAGTAAGCATGTTTCGATCATATCAGGCAGCAAGCAACCGTTAAATGCCC
CCCCCTCCCCCCCCCCCCCGTTTTTTCCCATTTTGGCCTCTACGCACCGA
CCAAAACTAGATGGCACCTGCTGAGCATTGAAGATCAAGCGTCAATGGTG
TCCGGCTTGGATTACGGCAAGCAAGACGAGGAGGAGGGGGAAGGGGG
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Coding sequence (CDS) from alignment at P-littoralis_Contig158:333339..339185+

>mRNA_P-littoralis_Contig158.99.4 ID=mRNA_P-littoralis_Contig158.99.4|Name=mRNA_P-littoralis_Contig158.99.4|organism=Pylaiella littoralis U1_48|type=CDS|length=1965bp|location=Sequence derived from alignment at P-littoralis_Contig158:333339..339185+ (Pylaiella littoralis U1_48)
CAGGGACAACGCCCGTCAGTTTGTGCAAAACATCCGAGACAACCTGGAGT
ATATCGTGGTAAGTCTCTGAAGGCATTGCTGGTACAAGCGCCGATCTCTG
CGTCGGTGTATGTAGAATCGAGAGAGAGAGAAACAAACCGCTTTGCAGCC
AATTTTCCACAGCGGTGTAGGTACAAACTTTGGATGCTTCTCCCCGCGTG
CGCTAACGCAACCAACCCATCTACCGTACCTATCATATATAGGATATTCC
TCACGGTCTCCCTCAACCACCTCACGCCGCGCGTCGACGGCGGGGAGCAC
GTCTGCTCTCCACGTCGTCCCTTGTGGGGCGGCGGGGGCAAAACTCCTAC
CACGAGTTCACATCGAACCCCTCGTTCGTCCGGTAGCGGCGACGGCGGCT
CCAGAAGCAGCGGCACAACTAGCGGCGGCTCCTCTCCTCCTTGCCAACTT
CCTTCCAAGCGCAAGCGCGTGCCGACACCCCCTGGCATAGCAGTAGCAGC
AGCAGAAGACGGCTCAGACTCTATTGCGGTGGCAGAGAGGGGCGGGAGGG
CGAGCAGAGGAGGGCAGTCAGAGATTCCTCCCGCCCGCATGCGAAGGACA
GAGTTACTGGCGGAGCCCCCAGCTGCTGCGTCGTCGTCTTCCGGTGGTGT
TACCACTGCTGCTGCTGCTGCTGCTGCTGCTGCTGCCGCTTCCGCTGCTG
TAGTTACAGGTTCACCAGCAGCGGGAAAGAAGTCACCGACAGCTGCCGCA
ACGACTCCCAGCCCACGTTTAAGCAGCGGTGGCGGCAACAGCAGTGGCAG
CAGTAGCCGAAGGCGTGGAGGGGGGCCGATAGGCCGAAGCGGAGCAAGGG
CAGCAGCAGGAGCAGGAGCTGGAGGGAGCAGGGACGGCAGCGGTAGGTTG
TTGTATGGCATGGCCCCGGAAGCTGGCACGGGCAGCAGCAGCACCGACAA
CTCTCCGAGACGATCGTCGATCGGTGGGAGCGGCAGCAGCAGCGGTAGTG
TCAGCGGCAACGGCAAGGGGAAAGGGAAAGGGAAAGCGAGAGCCAAGTCT
AGGTTGGCTATCGCTGCCACCAGCACCTCTGCTAGCGCAAATGCCAACGG
AAGCGGCATAGCAGCAGCAGCAGCAGCAGGCCCCGGCAATAATGGAAGCA
CTAGCAGCAATAGTCGTGCTGGTGGCCGGGGCGCCCAACGAAGCAGCAGT
GGCGACGGTGGTCAGGGTGGAGGAGTGATGGGGGGGGAGGAGGAGGATGA
GAAGGAGGAAGAGTCAGCGGCAGCAACAGCGTCCGAAGATCCAAGGGTTG
CCCGCATAGAGCAATTGCGGGAGCTGACGAAGAGCTGCTTGGAGGAGAAC
ATGTCGGACACTGCGGCCTACTACGCGGACAAACTCGTGACTTTCTCCAA
CTTCGACAGAGGAGCCGTTCTCCTTCTGGCCAAGGCACAGTTTGCCTGCG
GAGCGTACCTGCGTACCGTGCACCTGCTGGCGCAGCACCGCCTGCTGGAC
TATGCAGACAACTTTGGTCTCAGGGCATGCCATTTGGCTGCAAGAAGCCT
AAGAGCAGCCGACAAGACGGAGGAATCGGTGTCTTTGCTGGAGAAGGTGC
TGGGCCACACCGACGCTCATGCCGAGGAAGTGAAGGCTAGGGCCAAGGCG
ACGAGATCGAGGGAATCGGGAATCGCTGCCGCCAATAGGAGCAATTCGAC
CTCAGGGCTGGAGTCGGAGTCTCTGCCCGTTACGGCCGGCGTGGACGTGC
TCGCCGCTCTGTGCTGCCTGAGGGGCCAGGCGTACGCCAACCTGGACAAC
AGGCCAAGGGCGGCGGTGTGGCTCAGGACGGCTCTCGAGATTGACGCGCG
CTGCGTGGAAGCCCTGCAGTGCTTGACTCGATGGCACCTGCTGAGCATTG
AAGATCAAGCGTCAATGGTGTCCGGCTTGGATTACGGCAAGCAAGACGAG
GAGGAGGGGGAAGGG
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