mRNA_P-littoralis_Contig158.58.3 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig158.58.3
Unique NamemRNA_P-littoralis_Contig158.58.3
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
[Close]
BLAST of mRNA_P-littoralis_Contig158.58.3 vs. uniprot
Match: A0A6H5JMS3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JMS3_9PHAE)

HSP 1 Score: 362 bits (928), Expect = 4.630e-115
Identity = 176/227 (77.53%), Postives = 194/227 (85.46%), Query Frame = 2 
Query:  263 HEVVIPVVCFAACFAFQAWEFAGTHDPETARARTLFSDVRTGWVADNFMKGQAAVNTTRDYVRAALFFANTAILLTTFVVGYAGSRYTDCSDEANSCRGEDYLLIIKLGVLATVLMTIFFVFTQCTRFAVHFSFCINTTAIGGVPMPQSLMVKVFNHAHKYYSLGIRLYFGTIPVFAWIFTAWALLAVTPVYVFMVRGLENAGFVQAEMNEIARLRGAAAVPSSSNS 943
            + VVIP VCF  C AFQ WEF G H PE A+AR LF DVR GWV DN+MKGQAAVNTTRDY+RAALFFANTAILLTTFVVGYAGS YTDCSD   SC  +D+L +IKLGVLA +LMTIFFVFTQCTR+AVHFSFCINT  I G PMPQSLMVKVFNHAH+YYSLGIRL+FGTIPVFAWIFT+WALLAVTPVY +MVRGLENAGFVQ E++EIAR++ A   P SS+S
Sbjct:    4 NRVVIPAVCFTVCAAFQGWEFCGPHKPERAKARALFRDVRAGWVVDNYMKGQAAVNTTRDYIRAALFFANTAILLTTFVVGYAGSIYTDCSDGDKSCSADDWLFVIKLGVLAALLMTIFFVFTQCTRYAVHFSFCINTKKIAGAPMPQSLMVKVFNHAHQYYSLGIRLFFGTIPVFAWIFTSWALLAVTPVYAYMVRGLENAGFVQDELDEIARVKAALPQPPSSSS 230
[Close]
BLAST of mRNA_P-littoralis_Contig158.58.3 vs. uniprot
Match: D8LN41_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LN41_ECTSI)

HSP 1 Score: 355 bits (912), Expect = 1.170e-112
Identity = 172/213 (80.75%), Postives = 185/213 (86.85%), Query Frame = 2 
Query:  266 EVVIPVVCFAACFAFQAWEFAGTHDPETARARTLFSDVRTGWVADNFMKGQAAVNTTRDYVRAALFFANTAILLTTFVVGYAGSRYTDCSDEANSCRGEDYLLIIKLGVLATVLMTIFFVFTQCTRFAVHFSFCINTTAIGGVPMPQSLMVKVFNHAHKYYSLGIRLYFGTIPVFAWIFTAWALLAVTPVYVFMVRGLENAGFVQAEMNEIAR 904
            +VVIP VCFA C AFQ WE  G H PE ARAR LF DVR GWV DN+MKGQAAVNTTRDY+RAALFFANTAILL TFVVGYAGS YTDCSD   SC  +D+L +IKLGVLA +LMTIFFVFTQCTR+AVHFSFCINT  I G PMPQSLMVKVFNHAH+YYSLGIRLYFGTIPVFAWIFT+WALLAVTPVY +MVRGLENAGFVQ E++EIAR
Sbjct:   13 QVVIPAVCFAVCAAFQGWELWGPHKPELARARALFRDVRAGWVVDNYMKGQAAVNTTRDYIRAALFFANTAILLATFVVGYAGSIYTDCSDGDTSCSADDWLFVIKLGVLAALLMTIFFVFTQCTRYAVHFSFCINTRKIAGAPMPQSLMVKVFNHAHQYYSLGIRLYFGTIPVFAWIFTSWALLAVTPVYAYMVRGLENAGFVQDELDEIAR 225
[Close]
BLAST of mRNA_P-littoralis_Contig158.58.3 vs. uniprot
Match: D8LN36_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LN36_ECTSI)

HSP 1 Score: 321 bits (822), Expect = 4.730e-99
Identity = 161/249 (64.66%), Postives = 187/249 (75.10%), Query Frame = 2 
Query:  245 VEGVGLHEVVIPVVCFAACFAFQAWEFAGTHDPETARARTLFSDVRTGWVADNFMKGQAAVNTTRDYVRAALFFANTAILLTTFVVGYAGSRYTDCSDEANSCRGEDYLLIIKLGVLATVLMTIFFVFTQCTRFAVHFSFCINTTAIGGVPMPQSLMVKVFNHAHKYYSLGIRLYFGTIPVFAWIFTAWALLAVTPVYVFMVRGLENAGFVQAEMNEIARLRGAAAVPSSSNSQAAGAISPAAATQRAG 991
            V+G+ L EVVIP +CFA C  FQ WEF G+HD + ARARTLF  VR GWV D FMKG AA NTTRDY+++A+F ANTAI L TF VGYAGS YTDCSD+ + C  ED+L +IKLG L+ VL+  FFV TQCTRFAVHFSFCINT  I GVPM  +++V VF H+HKY+SLGIRLYFGTIPVFAWIFT WALLAVTPVYV+MVRGLENAGFV+ EM+++   + A   P  S S A      A AT   G
Sbjct:    5 VDGINLQEVVIPAICFAVCAGFQTWEFLGSHD-DPARARTLFKAVRAGWVKDQFMKGTAACNTTRDYIKSAVFMANTAITLATFAVGYAGSIYTDCSDDDDDCTPEDWLFVIKLGCLSAVLLVNFFVLTQCTRFAVHFSFCINTREIEGVPMSHAMLVNVFEHSHKYFSLGIRLYFGTIPVFAWIFTPWALLAVTPVYVYMVRGLENAGFVKDEMDQMTGRKRATLPPPGSESTADARAVSATATAAGG 252
[Close]
BLAST of mRNA_P-littoralis_Contig158.58.3 vs. uniprot
Match: A0A835Z3S4_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z3S4_9STRA)

HSP 1 Score: 244 bits (622), Expect = 1.920e-70
Identity = 111/213 (52.11%), Postives = 150/213 (70.42%), Query Frame = 2 
Query:  254 VGLHEVVIPVVCFAACFAFQAWEFAGTHDPETARARTLFSDVRTGWVADNFMKGQAAVNTTRDYVRAALFFANTAILLTTFVVGYAGSRYTDCSDEANSCRGEDYLLIIKLGVLATVLMTIFFVFTQCTRFAVHFSFCINTTAIGGVPMPQSLMVKVFNHAHKYYSLGIRLYFGTIPVFAWIFTAWALLAVTPVYVFMVRGLENAGFVQAEMN 892
            V L  +++P+VCF     F A+EF G         R LF  VR GWV +N++KGQ AVNTTRDYVR +LFF NTAIL+  F  G+A +RY  CSD    C   D  L+IK+G +  ++++IFF+FTQC+RF +HFSF INT  + GVP+P+ L  +VFNHAH YY +GIR+YF TIPVFAW+FT W LLAVTP+Y++++ GLE++ F+  E++
Sbjct:    4 VDLSAIIVPIVCFVFIAFFHAFEFRGE-----GPTRGLFKRVRKGWVEENYLKGQQAVNTTRDYVRVSLFFGNTAILIANFAAGFAATRYATCSDAEGGCTSNDIQLMIKIGCIVALMLSIFFLFTQCSRFIIHFSFMINTRDVNGVPLPKELTNRVFNHAHDYYGIGIRMYFMTIPVFAWVFTEWCLLAVTPIYLYIIHGLESSSFMTKELS 211
[Close]
BLAST of mRNA_P-littoralis_Contig158.58.3 vs. uniprot
Match: A0A835ZEB1_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZEB1_9STRA)

HSP 1 Score: 216 bits (549), Expect = 1.490e-60
Identity = 99/213 (46.48%), Postives = 141/213 (66.20%), Query Frame = 2 
Query:  260 LHEVVIPVVCFAACFAFQAWEFAGTHDPETARARTLFSDVRTGWVADNFMKGQAAVNTTRDYVRAALFFANTAILLTTFVVGYAGSRYTDCSDEANSCRGEDYLLIIKLGVLATVLMTIFFVFTQCTRFAVHFSFCINTTAIGGVPMPQSLMVKVFNHAHKYYSLGIRLYFGTIPVFAWIFTAWALLAVTPVYVFMVRGLENAGFVQAEMNEI 898
            +H++ IP+VCFA   A+  +EF           R LF+ VR GWV +  + GQ AVNTTRDY+R A     ++I++  FV G A   + DC++    C   + L+++KLG L  ++ TIFF+FTQC RFA+HFSF INT  +  VP+P SLM +VF+HAH YYS+GIR +F TIPV +W+FT+W LL VTPVY+ +V G+E++ F+   + E+
Sbjct:    3 VHQIAIPIVCFAFIVAYHGYEFV-----RVGETRKLFAQVRKGWVDNCVLTGQQAVNTTRDYIRVASALGGSSIIIAIFVAGVASGHFADCANSGTGCTQAEVLVLVKLGTLVGLMCTIFFLFTQCARFAIHFSFMINTREMNSVPLPPSLMTRVFDHAHWYYSVGIRAFFVTIPVVSWLFTSWCLLGVTPVYLLVVHGIESSAFMSEPLLEL 210
[Close]
BLAST of mRNA_P-littoralis_Contig158.58.3 vs. uniprot
Match: A0A7S3Y5F8_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3Y5F8_HETAK)

HSP 1 Score: 69.7 bits (169), Expect = 6.040e-11
Identity = 31/56 (55.36%), Postives = 42/56 (75.00%), Query Frame = 2 
Query:  713 MVKVFNHAHKYYSLGIRLYFGTIPVFAWIFTAWALLAVTPVYVFMVRGLENAGFVQ 880
            MVKVF  AH YYS+GIRLYF  +P+FAW+F+ WALL  T +++ ++  LE A F+Q
Sbjct:    1 MVKVFERAHMYYSIGIRLYFLAVPLFAWLFSRWALLGATVIHLTIIYELERAQFLQ 56
[Close]
BLAST of mRNA_P-littoralis_Contig158.58.3 vs. uniprot
Match: A0A809SCR9_9PROT (Uncharacterized protein n=2 Tax=Sulfuriferula nivalis TaxID=2675298 RepID=A0A809SCR9_9PROT)

HSP 1 Score: 65.9 bits (159), Expect = 3.610e-8
Identity = 52/175 (29.71%), Postives = 87/175 (49.71%), Query Frame = 2 
Query:  380 RTGWVAD--NFMKGQAAVNTTRDYVRAALFFANTAILLTTFVVGYAG-SRYTDCSDEANSCRG--EDYLLIIKLGVLATVLMTIFFVFTQCTRFAVHFSFCINTT-AIGGVPMPQSLMVKVFNHAHKYYSLGIRLYFGTIPVFAWIFTAWALLAVTPVYVFMVRGLENAGFVQAE 886
            RT WV    N  +   AV T R+   AA F A+TA+LL   V+  +G +   + +  A +  G   + + +IKL VL + L   FF F+   R   H  F IN    +    +    +    N A K+YS+G+R Y+ ++P+  W+F    ++A T + +F++  ++ A  V A+
Sbjct:   52 RTAWVETIMNERRDVLAVQTLRNSTMAATFLASTAVLLIIGVLNLSGEAEKLNTTWHALNAVGATNNSIWLIKLLVLLSDLFVAFFCFSMSIRLYNHVGFMINVPLTLNHKMISPPHVASHLNRAGKFYSIGMRAYYFSVPMVFWLFGPHFMVAATILLIFVLYFIDRAPKVMAD 226
[Close]
BLAST of mRNA_P-littoralis_Contig158.58.3 vs. uniprot
Match: A0A4Y9RK56_9BURK (DUF599 domain-containing protein n=1 Tax=Oxalobacteraceae bacterium OM1 TaxID=2561929 RepID=A0A4Y9RK56_9BURK)

HSP 1 Score: 65.5 bits (158), Expect = 4.140e-8
Identity = 59/186 (31.72%), Postives = 85/186 (45.70%), Query Frame = 2 
Query:  269 VVIPVVCFAACFAFQAWEFAGTHDPETARARTLFSDVRTGWVAD---NFMKGQAAVNTTRDYVRAALFFANTAILL---TTFVVGYAGSRYTDCSDEANSCRGEDYLLIIKLGVLATVLMTIFFVFTQCTRFAVHFSFCINTT--AIGGVPMPQSLMVKVFNHAHKYYSLGIRLYFGTIPVFAWIF 802
            +   V+  AA +AF         DP+      +    R+ W+A    N  K   AV T R+YV AA F A++AILL   T  + G A S        + +   E    I K+  L TVL+  FF F    R   H  F +     A  G   P+ +  ++ N A KYYS+G+R +F T+P+  W+F
Sbjct:   11 IATSVLLLAAYYAFLLHRTR--RDPDYT-VHAVNQRARSAWIAGVMRNSSKDIMAVQTLRNYVMAATFKASSAILLIMGTLTLSGQAESLAKTWHVLSFAGPSEPEWWIAKVICLLTVLLVAFFSFAMAIRILNHVVFMVGLPQEAATGALAPERVAQRL-NQAGKYYSIGMRAFFITVPLVFWLF 192
[Close]
BLAST of mRNA_P-littoralis_Contig158.58.3 vs. uniprot
Match: A0A7Y4S2D1_9PROT (DUF599 domain-containing protein n=1 Tax=Sulfuriferula sp. TaxID=2025307 RepID=A0A7Y4S2D1_9PROT)

HSP 1 Score: 63.5 bits (153), Expect = 2.220e-7
Identity = 53/176 (30.11%), Postives = 88/176 (50.00%), Query Frame = 2 
Query:  380 RTGWVADNFMKGQ--AAVNTTRDYVRAALFFANTAILLTTFVVGYAGSRYT-DCSDEANSCRGEDY--LLIIKLGVLATVLMTIFFVFTQCTRFAVHFSFCINTTAIGGVPM--PQSLMVKVFNHAHKYYSLGIRLYFGTIPVFAWIFTAWALLAVTPVYVFMVRGLENAGFVQAE 886
            RT WV     + +   AV T R+   AA F A+TA+LL   V+  +G     + +  A +  G  +  + ++KL VL + L   FF F+   R   H  F IN        M  PQ + + + N A K+YS+G+R Y+ ++P+  W+F    ++  T + +F++  L+ A  V A+
Sbjct:   53 RTAWVETIMSERRDILAVQTLRNSTMAATFLASTAVLLIIGVLTLSGQAANLNMTWHALNALGATHSSIWLVKLLVLLSDLFVAFFCFSMSIRIFNHVGFMINVPLTLNHKMITPQHVALHL-NRAGKFYSIGMRAYYFSVPMVFWLFGPHFMVGSTILLIFVLYFLDRAPKVMAD 227
[Close]
BLAST of mRNA_P-littoralis_Contig158.58.3 vs. uniprot
Match: A0A6H5K746_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K746_9PHAE)

HSP 1 Score: 56.2 bits (134), Expect = 1.150e-6
Identity = 26/36 (72.22%), Postives = 30/36 (83.33%), Query Frame = 2 
Query:  407 MKGQAAVNTTRDYVRAALFFANTAILLTTFVVGYAG 514
            MKG AA NTTRDY+++A+F ANTAI L TF VGYAG
Sbjct:    1 MKGTAACNTTRDYIKSAVFMANTAITLATFAVGYAG 36
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig158.58.3 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 14
Match NameE-valueIdentityDescription
A0A6H5JMS3_9PHAE4.630e-11577.53Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LN41_ECTSI1.170e-11280.75Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D8LN36_ECTSI4.730e-9964.66Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A835Z3S4_9STRA1.920e-7052.11Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A835ZEB1_9STRA1.490e-6046.48Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A7S3Y5F8_HETAK6.040e-1155.36Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
A0A809SCR9_9PROT3.610e-829.71Uncharacterized protein n=2 Tax=Sulfuriferula niva... [more]
A0A4Y9RK56_9BURK4.140e-831.72DUF599 domain-containing protein n=1 Tax=Oxalobact... [more]
A0A7Y4S2D1_9PROT2.220e-730.11DUF599 domain-containing protein n=1 Tax=Sulfurife... [more]
A0A6H5K746_9PHAE1.150e-672.22Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig158contigP-littoralis_Contig158:252697..259258 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog765912.Thimo_0820
PFAMsDUF599
Model size2929
Max annot lvl135613|Chromatiales
Hectar predicted targeting categoryother localisation
Exons6
Evalue3.47e-11
EggNOG OGsCOG3821@1|root,COG3821@2|Bacteria,1RDXR@1224|Proteobacteria,1S43M@1236|Gammaproteobacteria,1WZ29@135613|Chromatiales
Ec32 ortholog descriptionProtein of unknown function DUF599
Ec32 orthologEc-05_003400.1
DescriptionProtein of unknown function, DUF599
Cds size780
COG categoryS
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig158.58.3prot_P-littoralis_Contig158.58.3Pylaiella littoralis U1_48polypeptideP-littoralis_Contig158 254614..259026 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789755.6086466-UTR-P-littoralis_Contig158:252696..2546131680789755.6086466-UTR-P-littoralis_Contig158:252696..254613Pylaiella littoralis U1_48UTRP-littoralis_Contig158 252697..254613 -
1680789755.6829226-UTR-P-littoralis_Contig158:259026..2592581680789755.6829226-UTR-P-littoralis_Contig158:259026..259258Pylaiella littoralis U1_48UTRP-littoralis_Contig158 259027..259258 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789755.6208174-CDS-P-littoralis_Contig158:254613..2548401680789755.6208174-CDS-P-littoralis_Contig158:254613..254840Pylaiella littoralis U1_48CDSP-littoralis_Contig158 254614..254840 -
1680789755.6315653-CDS-P-littoralis_Contig158:255185..2552901680789755.6315653-CDS-P-littoralis_Contig158:255185..255290Pylaiella littoralis U1_48CDSP-littoralis_Contig158 255186..255290 -
1680789755.6400828-CDS-P-littoralis_Contig158:256355..2565231680789755.6400828-CDS-P-littoralis_Contig158:256355..256523Pylaiella littoralis U1_48CDSP-littoralis_Contig158 256356..256523 -
1680789755.6489375-CDS-P-littoralis_Contig158:257350..2574651680789755.6489375-CDS-P-littoralis_Contig158:257350..257465Pylaiella littoralis U1_48CDSP-littoralis_Contig158 257351..257465 -
1680789755.6587698-CDS-P-littoralis_Contig158:258012..2581411680789755.6587698-CDS-P-littoralis_Contig158:258012..258141Pylaiella littoralis U1_48CDSP-littoralis_Contig158 258013..258141 -
1680789755.6722357-CDS-P-littoralis_Contig158:258990..2590261680789755.6722357-CDS-P-littoralis_Contig158:258990..259026Pylaiella littoralis U1_48CDSP-littoralis_Contig158 258991..259026 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig158.58.3

>prot_P-littoralis_Contig158.58.3 ID=prot_P-littoralis_Contig158.58.3|Name=mRNA_P-littoralis_Contig158.58.3|organism=Pylaiella littoralis U1_48|type=polypeptide|length=260bp
MGYDVEGVGLHEVVIPVVCFAACFAFQAWEFAGTHDPETARARTLFSDVR
TGWVADNFMKGQAAVNTTRDYVRAALFFANTAILLTTFVVGYAGSRYTDC
SDEANSCRGEDYLLIIKLGVLATVLMTIFFVFTQCTRFAVHFSFCINTTA
IGGVPMPQSLMVKVFNHAHKYYSLGIRLYFGTIPVFAWIFTAWALLAVTP
VYVFMVRGLENAGFVQAEMNEIARLRGAAAVPSSSNSQAAGAISPAAATQ
RAGDKQHTV*
back to top

mRNA from alignment at P-littoralis_Contig158:252697..259258-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig158.58.3 ID=mRNA_P-littoralis_Contig158.58.3|Name=mRNA_P-littoralis_Contig158.58.3|organism=Pylaiella littoralis U1_48|type=mRNA|length=6562bp|location=Sequence derived from alignment at P-littoralis_Contig158:252697..259258- (Pylaiella littoralis U1_48)
CTGCCGTGCTGCTGCTTTCGCTTCCCTCTCTTCGTCTGACAGGGACCCCT
TTCGCCCTTGGTCCCAGTGCGTAGAGAACGATAGATTTACTTCAGCATTG
CTGTTTCTTCCAGCCAATCCTCGATTCGATACTCGGCAGAGCTGGGAGTG
GGACGCGGCGGGGAGTTATCGTGTAGGATAGCGGCTTGTTGCAGTTCTGC
ACCTGGTCCGCCAGAGGTGCTCACTCCGTGTGATGGGCTATGACGTGGAA
GGGGTTGGCTTGCATGAGGTATGCTATGCCCGAGGCTGAGTAACTTGTGG
AGTGTGGCTGCAAGCTGCGAAATCGCACTCACTGCCCGACTCATCGGTCG
GTACTTGGTAGAGCTCAGAGCTTTTGCCGTCTTTTGTATGGTAGATAACA
CCCCCCCCCCCGAAACTGGTGCAGACCTTGTCCATTCCAACAATTTACAG
CAGCAGTGTACAGCAGTATCGCGAGAAGAGCTTGCCGGTGCCCAACAGGG
AGGCGTTTAGAAATTACTTCAAGTACTTCGTACAAATTAGCCAACATGCG
AATATTTTAGTAGTAGTAGATGTGACTGGGGGAAAAATAACCAATTACTG
CTGTAGTGCCTTGCCTTCCATCGTACATGCAGCAGTAGATCTGCAGAGGT
GCTAAGTGGTACTATATGCTGTACACACCAGCAGCGGGTGCTAAGTACTA
CGCATTTATTTTTCAGTATCAAGAGTTTCGTACCCCGTATTGGGGTGTGT
TGGATTGTCATCTCGTCGTCTCTACTTTCTCTCTGGTACATTTGGGGGGA
GGGGGGAATCGGTTCAAGGTGAACGGTTCCCATCGTGGCTCTGATGGCCG
GTTGCAATCCCTTTCGCCCTCTTGGACGGCTTTGCTTCGAGTTTCGGATT
TCAGTCCTCCCTGGGAATAAATGAACACCACGTGGTCAAAAGGAATCTGT
CGTATCATCGCGCATGTATAATACCGGTGTGAGTACATTGTTTCACAGGG
CAACTTGTTTTTCGTCCGGTGGTATGTATCAGTTCGACACTATGATACTG
CAGCAGTCGTCCTGTTTCGTTCGTCGTTTGTGAACTCCCGCCCCCACTTC
TATGCATGCACACACAGGTGGTGATTCCGGTGGTCTGCTTCGCGGCCTGC
TTTGCGTTCCAGGCATGGGAGTTTGCCGGCACGCACGACCCCGAGACCGC
CAGAGCGAGAACTCTCTTCTCGGACGTGCGAACCGGCTGGGTTGCGGTGA
GAGGGGTGTTTTTATTGTGGCTGCGGTGGAGTAGTTGTTGTATCATATCA
TAGGGCATGGCCCTATTTGCGTTTTGTGTACGTAATCGTTTTTCCAGTAT
CCAACATAAAGGTAAGTACGTGAGATGCGCCTCGAAGAAACGATTAATTT
TTATGACGAATGGCTACCACTCCGTACCTTCCTCCCTCAGGATAGCTTTG
GCGGGAACGGGCCGAGTGCCGGTGCACACTGCAGCTGCTACGCTGAAGCC
GTGCTGCCAAACGAATACACCTTCATCATGCATGACCCATCACAGCGAAT
GACGTCTTTGTGGTTTGGCTGACTTTGCTGGTCGGTGCCTGCGAAGGGTA
GTATTTGAAGCGAGCGAAAACAAGGAAGGAGGGTGGGGGTAAAATGGCGT
GTGTTTGGGGGGAGGGGGATAGAGACGTTGGGCGATCCCACAATGTGTGA
AAGACAGCACGAAAGGTTTGTACGGAGTATTTAACATGGACAGTGTTGTG
CGTGATCTTCCTGTGTGTCATTTGAAACGTGCGGTCGTTCCAGGATAACT
TCATGAAGGGTCAAGCCGCGGTGAACACAACAAGGGACTACGTCAGAGCT
GCCTTGTTCTTCGCGAACACCGCCATCCTGCTCACAACCTTTGTCGTGGG
GTACGCCGGTGAGTTGGAACTGTACTGGCATGGGCCCATTTGGAAAGCAA
TCTAACCACGCGCTCAAAAAACAACTCAGGACCAAGTCAAGCAAAACTAC
ACGAGCAGATTCAATTTAGAGACTTTAAGCCGGTCGAGTCAGCTTTTGTC
GCAGGAATTCGAATCGTTCGTGGTTGAATCGGCAGGTCACGAGCTTGAAC
CAAGTAGGGCCATGAAGAAATTCCAAAAGTAAGCACAGCAGCAGCTGTCA
GGAGGATGGAAGAATCACGAACCCGAAATAAAAATTCGGCCGGCCAACAC
GATCGACCGCTCAAATCAGATCAAGTCCCACATCACACAGGGCAAACAAA
TAAGTTATGCAACAATGATATCGAACGCAGTTTAACAAACGAGTCGCGGC
TGTTTGGAGGAAGGGACCGACCGATAGCGCGCGGCCAAGCTTTTTTCAGG
ATTGGTCGTCATCAAGCAATCAAATCCAATCCGATCCGATGTATAGTCGT
TCGCACCGTCCGTACTGTTGAACTCCCCACTCCGCACCCTCCTGACTAGG
TAGAATACTGTATGGAGTCGCCCCTGTCATGAAGAAAATAAATGCTTTGA
GGGTTCAATTTATGAGCCTCTCTCCGGGGGTTGTCCACCCCCCCGCGCCC
CCGTCCTAGAGAAACGGCCCCCCTACTTGTACAGTAAAAAAAATGTTTTT
CCTGCGCGGGGGGGCGGGGTTGGGAGCCTCCTCGAGCGAGCACGCGGCCA
GAAGACGATAATGTAGAAAACACGCAATTATTTATACTGCAGTGAACAAT
TGTTGTCGCCATCGAAACGAAACGCACCAAATCAGGGTCGAGGTACACCG
ACTGTTCCGACGAGGCTAACTCCTGCAGAGGAGAGGACTATCTCTTGATA
ATCAAGCTGGGCGTGTTGGCGACCGTGCTCATGACCATCTTTTTCGTCTT
CACGCAGTGCACTCGGTTCGCGGTCCACTTCAGCTTTTGCATCAACACCA
CGGGTAAAGTAGTAGCTGAAAAATGTAGCACTGCGGTAGCTGAGAGATGT
AGTCCAGTGGGGGGGGGACATTTTTCCCAACATAATTTTTTCTCTTTAGT
ACACTCGTGTACAACGCAGTATTGGTATGTATCGTGTTGTGCAATTATCA
TGTGTTGTTGTCTCTGAACAGAAAGGCATCGCTTCGGTGGTGTGCTCAAG
AGGTGTTTACGGGTGTCGGGGCATGCAGCTCCCGTGAGGGAAGGGAGCTT
ACGATTGCCTCTATGCGCTGTGCACTCGCTGCACGATGCGCTTCACCCTG
GTGCCCCACGCCCAACACCACAGGCGAGTTAGCCTACCGTGAGCGTTTTT
TTTCTAGGACGGTGTCGTCGCTGGGTTTGGCGGTATTCGATCGGAATCTT
CCGTTGCGAGGGAGGTTTGTGCCGCATCAGTGCTCGAATCATTAGCAATA
CCGAGGGAGTCAAGTGACAGAGGTTGATCGATTGATGCGTGCGTCGAGCA
TCCTAGTCGTCGTCGTCGTCGTCGTCGTCGTTGCTGTTGTTGTCCTAGCA
GATCGCATCGCGTGACGTTCACACCATGACGATGCTGTATCGCCCATGGT
ACTCAGGGCTGTCCCGACCTTGCCGACGGTGATTCAAAGTTCTTACACCA
GTAGGCGTGCCCAAACGAGTGCTGTAGCTTGTCTCGAAAAAATGGTTTGC
CGGTCGTGAGACCTTTCGCGTAAAAAAAGATCGACGAAAACCGGCAAATC
TGCACTCAAATCATTCGTGCACTATTTGTTGGTGTCAACAGTTTTTTGCG
TTGCTGGTTCTGCAGAGGCACACAGGTTTGTGCCCGTTCGCCGGGCGTGT
CTATGCATGCACAGCTGTGTGGCGAAAAGGAATTGAAACTCAACCTTGAG
GCTATTTCCCCCTTTGTCACTTGTTGCACCGCATCGTTTACTGCTGTTTC
ATCACACTACCATGAGCCAGCCGTCTAAGGGGTTAAACCTCCGTCCCCCC
GTCCTCCTCTTTATTGTCTGGTGTGTGTGTTTTTTTGCCGGTGCGGAATG
CTGTCTCTCCTTTTGCAGCGATTGGCGGGGTGCCAATGCCTCAGTCTTTG
ATGGTGAAAGTGTTCAACCACGCGCACAAGTACTACAGCCTGGGCATCCG
ACTCTACTTCGGAACCATACCAGGTAAGGAAACAAGTAAAAAACGTGCTG
GTGATTGGTCCTGCCGCGGGGCTGCTCCGCGCCACATACCGAATCGTACA
TGCAAGTGTGTTTCCACAGCAGGGGGACAAATAAGCAACGACCCGATAGT
TTTGCACTGCCCTGCGTCAGAAACGTTCCGGTGGGGCAACACTTTCGCTA
TGAACATTCAGAACCGTTGCCACCACCTCGCCCGCAATGAACGTACCTTG
TCTCGATTGCGCGTCGCCCCTTCTCTGGACCCAACCAAGCGGGAGCAACA
AATGAGCCGGGTACTCCTCCCCGCGACCGTTTCTCGGCCGTTTTTTTTTA
AACACGTGTATTGCGCAGTGTTTGCGTGGATCTTCACGGCTTGGGCGCTG
CTAGCGGTGACGCCGGTGTATGTGTTCATGGTCAGGGGACTGGAGAACGC
CGGGTTTGTGCAGGCCGAGATGAACGAGATCGCGAGGCTGAGAGGGGCTG
CGGCGGTGCCATCGTCGTCTAACTCTCAAGCGGCGGGCGCTATTTCGCCT
GCCGCCGCTACGCAAAGAGCAGGGGACAAGCAGCACACGGTGTAAAACCA
GCACGTGGATGCAAGCTGTGCTGTGCATTGGTCTTCGTGGTATTGTGCTT
GAGGCTTTTCCACAATTCCACCCACGATCGTCGTCCTTTTCTTTTATGGT
GGTCTTCTCATGAGGGCCGAGGGTGAGGAGCATGCATTTGCTGCGGGGAG
CTGCTGTCGTGCACGCATCAGTTTCACTGACATACTTCACACGCTAATTC
TGTCGTTTTCGGCAACCTTGGGTAGTAGTTGGCTTACCTGCTCTGCTCAG
TCCGGGGCAGTACAGCATGCCGTCTGATTTGTTCCGTGTAGGCTTTGACG
GGACTGCCAGCGGTGTGATGACTACGAAAGTTGAGGACGGATTTACCCGG
ACACCTTTGATTCATAAGGACAGTTTCAGCTGTGAAGAAAAACACCGCGT
TCTGAGTGTTGCTTTAAGATCGAACGTTAATTATGGTTGTGCTTGAGTGT
TGTTTTTTGCGTGAGATTCTTTTACGATGTACGCACGTTAATCGAAGAGT
TATTCGTTTAGAAGAGGGAGGTTTGTTTTTTGGGCGCACGTGTCTTCTAT
AGGAAGGACGTTTTCAAACAATTATGCACCACGTAGGTGTTGTATGGTGT
TTCTGTACATGTCGATATGGAAGGTTTTTCACACTGCTCTACCTGAAGCC
TTGAATACTTTGGTTGCCTTGATAAAGAGCGCATATTTCATTCAAAGCGC
TCATCGAAGAGCAGCCCAAACATTTTAGCTTGTGTACGACAAGCGAGGCA
ATATTAAATTTTCGATTTATATGTTAATCACATGGTATCGCCATACATCA
TCATTGTGTTTGTTACGGCGATGCTGCCGACCGAGGTTTCGTGACACCAC
CCCCCCCGCGCGCGCGCGCCCTTAACGATGGGACAAGGCAAAGGGTGGAG
GGTACCAACCAGTGTTTTTTGGTGTCTTTTGGTCGAGGAGGTTCTACCAG
TCATTTTTGTCCAAACAACGGTTGGTTGCGTAAGAGTTCGCAGACCATTC
CGGTTCGGGCGCAGGACGTAGGACCGTACGGTCAGTCAATCAGTCAGTCA
GTAGTGTGTTATTTGACTTTGTGCCCCCGTGAGTTCCCGGTATTGCCTTG
GCCACAATCGGTCGTGTCCATGAATTTTCCTTCGTGAGAGGGGTGTTGTT
TGGGAGTATGTACAGCACCCCCCTGACCAACAGCAGTCCGTAGTTCGTTG
AGCCAACACGCTCTTCTCAGTTTTTCGCCCGGGCTGTTCTAGGTACTGCT
GAGAGCTGTTCTTTTTTGCAGTTAGTTTGTGTTTGGGGGGCACACGTTGG
ACCTTGGACCTGATTGGTTCGGTAGAGATCGCGTCCGGCAGGGATTCGCC
AGTAACGAGAGCGAAGACTCCGGGTGTACAAGTAGCAGTGGAGGAGGTCA
AGGTCGACTATCGCAGAATCGCAGGTGAACTGTTTAAATGTATAACGACC
CACGGCACGCGATTCGTAACATTTTTTTTGTGAGGGTCGCGATTTAAAAT
TTATAGCTTTGCCCTTTGTGAGACAAATCACAACATGTATCGGGTACGGC
AGTTTCACGTGTCACACGTGCCATAGTCCGAAGATCAAACGAAGTGCCCA
ACGGGAAGCCCTGAGACAGCTTCGTGTATTTTTCAGCTAGTGTGGCGATG
TATCGTCGCAAACAGCTGTTCACCACGAACAAACGACACCAGCGCAATGA
ATAAACTGCCAAGTTGAAGCGCCTGTGGGGGAGAAGACGACAGCGCAGAG
CCTCGCCCCTTTGTATTTATTTGCACAATTTTCTCAACAAATAATTCGGT
TTATTAGTTGCCAACATTGGGGATCTTCTGTATGGTAGGTTTTGAAGGGC
TTGGGTGATGGTCCGACACCAAAAACACGCCTCTCACGACAAAATATCTT
GGGTGATGGTTC
back to top

Coding sequence (CDS) from alignment at P-littoralis_Contig158:252697..259258-

>mRNA_P-littoralis_Contig158.58.3 ID=mRNA_P-littoralis_Contig158.58.3|Name=mRNA_P-littoralis_Contig158.58.3|organism=Pylaiella littoralis U1_48|type=CDS|length=780bp|location=Sequence derived from alignment at P-littoralis_Contig158:252697..259258- (Pylaiella littoralis U1_48)
ATGGGCTATGACGTGGAAGGGGTTGGCTTGCATGAGGTGGTGATTCCGGT
GGTCTGCTTCGCGGCCTGCTTTGCGTTCCAGGCATGGGAGTTTGCCGGCA
CGCACGACCCCGAGACCGCCAGAGCGAGAACTCTCTTCTCGGACGTGCGA
ACCGGCTGGGTTGCGGATAACTTCATGAAGGGTCAAGCCGCGGTGAACAC
AACAAGGGACTACGTCAGAGCTGCCTTGTTCTTCGCGAACACCGCCATCC
TGCTCACAACCTTTGTCGTGGGGTACGCCGGGTCGAGGTACACCGACTGT
TCCGACGAGGCTAACTCCTGCAGAGGAGAGGACTATCTCTTGATAATCAA
GCTGGGCGTGTTGGCGACCGTGCTCATGACCATCTTTTTCGTCTTCACGC
AGTGCACTCGGTTCGCGGTCCACTTCAGCTTTTGCATCAACACCACGGCG
ATTGGCGGGGTGCCAATGCCTCAGTCTTTGATGGTGAAAGTGTTCAACCA
CGCGCACAAGTACTACAGCCTGGGCATCCGACTCTACTTCGGAACCATAC
CAGTGTTTGCGTGGATCTTCACGGCTTGGGCGCTGCTAGCGGTGACGCCG
GTGTATGTGTTCATGGTCAGGGGACTGGAGAACGCCGGGTTTGTGCAGGC
CGAGATGAACGAGATCGCGAGGCTGAGAGGGGCTGCGGCGGTGCCATCGT
CGTCTAACTCTCAAGCGGCGGGCGCTATTTCGCCTGCCGCCGCTACGCAA
AGAGCAGGGGACAAGCAGCACACGGTGTAA
back to top