mRNA_P-littoralis_Contig158.52.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig158.52.1
Unique NamemRNA_P-littoralis_Contig158.52.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
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BLAST of mRNA_P-littoralis_Contig158.52.1 vs. uniprot
Match: D8LN47_ECTSI (Cyclic nucleotide-binding domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LN47_ECTSI)

HSP 1 Score: 162 bits (411), Expect = 1.540e-44
Identity = 76/99 (76.77%), Postives = 86/99 (86.87%), Query Frame = 1 
Query:    1 QLSVITSAVLERFEDRDFNPVMFRIYMLVLAFVLVVHFIACGYWFVSRANDPEFEGMWSPEHEYLDAGLYLQYSRALYFSLVITYGNDLRPDTHWEYIF 297
            QLSVI++AVL+RFEDRDFNP MFRIY+ V  FVLVVHFIACGYWFVSR  DPEFEG+W PE EYLDA LY +Y+RALYFSLVITYGNDL+P+   EY+F
Sbjct:  402 QLSVISTAVLQRFEDRDFNPSMFRIYIFVFTFVLVVHFIACGYWFVSRTTDPEFEGLWVPEQEYLDAALYKKYTRALYFSLVITYGNDLKPENDAEYVF 500
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BLAST of mRNA_P-littoralis_Contig158.52.1 vs. uniprot
Match: A0A6H5JMZ2_9PHAE (Cyclic nucleotide-binding domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JMZ2_9PHAE)

HSP 1 Score: 130 bits (328), Expect = 4.270e-34
Identity = 60/78 (76.92%), Postives = 67/78 (85.90%), Query Frame = 1 
Query:   64 MFRIYMLVLAFVLVVHFIACGYWFVSRANDPEFEGMWSPEHEYLDAGLYLQYSRALYFSLVITYGNDLRPDTHWEYIF 297
            MFRIYM V  FVLVVHFIACGYWFVSR  DPEFEG+W PE EYLDAGL+ +Y+RALYFSLVITYGNDL+P+   EY+F
Sbjct:    1 MFRIYMFVFTFVLVVHFIACGYWFVSRTTDPEFEGVWVPEQEYLDAGLFEKYTRALYFSLVITYGNDLKPENDVEYVF 78
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig158.52.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LN47_ECTSI1.540e-4476.77Cyclic nucleotide-binding domain-containing protei... [more]
A0A6H5JMZ2_9PHAE4.270e-3476.92Cyclic nucleotide-binding domain-containing protei... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig158contigP-littoralis_Contig158:208128..210562 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog2880.D8LN47
PFAMsIon_trans,Ion_trans_N,cNMP_binding
Model size299
Max annot lvl2759|Eukaryota
Hectar predicted targeting categorysignal anchor
Exons4
Evalue2.53e-45
EggNOG OGsKOG0498@1|root,KOG0498@2759|Eukaryota
Descriptionvoltage-gated potassium channel activity
Cds size297
COG categoryU
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789754.8553677-CDS-P-littoralis_Contig158:208127..2081901680789754.8553677-CDS-P-littoralis_Contig158:208127..208190Pylaiella littoralis U1_48CDSP-littoralis_Contig158 208128..208190 +
1680789754.8654346-CDS-P-littoralis_Contig158:208807..2088871680789754.8654346-CDS-P-littoralis_Contig158:208807..208887Pylaiella littoralis U1_48CDSP-littoralis_Contig158 208808..208887 +
1680789754.9046407-CDS-P-littoralis_Contig158:209299..2094241680789754.9046407-CDS-P-littoralis_Contig158:209299..209424Pylaiella littoralis U1_48CDSP-littoralis_Contig158 209300..209424 +
1680789754.9178498-CDS-P-littoralis_Contig158:210531..2105601680789754.9178498-CDS-P-littoralis_Contig158:210531..210560Pylaiella littoralis U1_48CDSP-littoralis_Contig158 210532..210560 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig158.52.1prot_P-littoralis_Contig158.52.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig158 208128..210560 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig158.52.1

>prot_P-littoralis_Contig158.52.1 ID=prot_P-littoralis_Contig158.52.1|Name=mRNA_P-littoralis_Contig158.52.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=99bp
QLSVITSAVLERFEDRDFNPVMFRIYMLVLAFVLVVHFIACGYWFVSRAN
DPEFEGMWSPEHEYLDAGLYLQYSRALYFSLVITYGNDLRPDTHWEYIF
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mRNA from alignment at P-littoralis_Contig158:208128..210562+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig158.52.1 ID=mRNA_P-littoralis_Contig158.52.1|Name=mRNA_P-littoralis_Contig158.52.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=2435bp|location=Sequence derived from alignment at P-littoralis_Contig158:208128..210562+ (Pylaiella littoralis U1_48)
CAGCTCTCGGTGATCACGAGCGCTGTCCTGGAGAGATTCGAAGACCGGGA
CTTCAATCCTGTGGTGAGCGACGATCTCAGCTCGGTGTCCGAGGACACAT
CGCTGGAACATGGCAATCATTTATACCGCCTGGAACATGGAAATAAATTA
CCACATTTGAGCCTCTTGGCTCCATGCAGGGGCGCATAATGTTTCATCCT
CGATATTCTGCCGCAAAAAGGTTGTTAAAATACCTTCAATCGGCAGCGCT
GAAATGACGCAAAGCTCAGGGTATGCGTGTTTACTCTACCGGTCGGCTAT
TGAGGAGAATGTCGACTGTACAAATCGCCTATCCTACCCGTGAGGTTTAC
CGAGAGACGTTTCCCCATGTTGGAGCTACGCGAATAACAGATTCAATCGA
GCATATGATACGTCAGTTCTGTGGTTTTATGCGACAAAAATAAAATATTC
CCCCCTTTAAGGAGGGGGCACGGAATTCGTACCAACCCTCCGCGACCCCC
CGAACACAAGTATTTTTCGTTATGCTCCTTGACGTAAGATCTTGTTCCTA
AAATCAAGTTTGTGCATCCGTAATTCTCCCTGACGTTTCGTTTATTTCTG
TATCGTCTTACCCTCTCCCTCGCTCTCTCCTTCCCTGTTTTTCTCTTTCT
GTCACTCGCTCTTTGCACCTTGCGTATTAGATGTTTCGTATCTACATGTT
GGTGCTGGCCTTCGTGCTTGTGGTGCATTTCATCGCCTGCGGATACTGGT
TCGTCTCGAGGCAAGAGAGAGGCTCCTATTCTGAAACAACTGACGTTGGC
GACTAATTTACCGCCTTGTTCAGAAAAACGATCAAGCTTCTTGCTTTTTC
TGATGACGAAGGCTGTCATTTGATCTTGATACGTAACTGCATCCTCTAAA
GTCGTGACGCGACGTGCCCGCTTCTTTATGTTGGTACTCCTCGATGCCGA
CACTGTTGATCCCAGCATTATTGACAATTATGTACCACTTTCTCGATGGA
ATTACAAGTGACGTCAACGTGGTGTTCCCATGCTATCTCGACAATAGTAT
TGCTTGACGCTAGTGTAACGTTGCAAAGAACACGTGCGATGCAAACAGAA
CATACACCTCGGTATTGTTTAGCTTTGACGTCAACATGATGGTACAAAGA
ATCCTGTACATTGCGTTAACAGGGCAAATGATCCTGAATTCGAGGGCATG
TGGAGCCCTGAGCACGAGTATCTGGACGCGGGCTTGTACCTGCAGTATTC
CAGAGCTCTCTACTTCTCCCTCGTCATCACGTACGGAAACGACTTGAGTG
AGTGTAAAACAGAACCGAAGATGCAATAAAGTGGGCTTCATTTGATTGGA
GAATATGGGAACTCTCTTTAAGCTGGTTTGAAAAGCAAGTGAAACGACGG
GACAGACACAGTTGTAAATGTTTGTGGATGCACATGGAAGCGATATGGTT
GTTAATGTACTAGGCCTGGCAAGGAAAGATAGGAAGGCAACAGGGCGTTC
TTTCCTGGGCCTGGGATGTGCCAGAAATAACCCCAGAGCTATGTCGTACG
GCATCATCATCGGCTACGGAAACGTTTTCCGGGAGAGAAATCTCACGTGT
CGCACAGTTTGATATTGTATTGGAAATGAAAATAGTACACAGGTGGTAAA
TCCTTGGAATCAGTACTGTTATGGTATTGTACCTGGTCACCCTGCGCTAG
ATAAAAGATGCACACTCCATTTTCAACGTTTACTAAAGTTAGGGATCTAG
AAAACCGAAAGCGGCTCTGGGCTTGCATCTCGTATCATTTATTTTTCGTT
GTCACCGACCAGACTGACTGGAACGAGTCGGTAAATCATATCGTTATTAT
CAGGTGGAAGTGAGAATGGAGAATGCTTAAACTGCGATTTATTTTCTGCG
TGGGCGGAAACGGGCATGAAGCACATTGTACTGGATTGGCGTGGGGAAAC
CTTCGGAATAAACTGGGTGCACAATTGCTGACGATGTTTTGGGTTAGGAC
TTGAAAAGAAGAGCGGACTCCGAAGGAGAGATCGATGTGAATGGAGATCG
AACTTTTTTGCAAATCCAGAGATCGACGTTGGGCCCGGGTCCGCCTACGG
GAAACAATTTGAATGCGTGAACAAGTTGATTATTTGTTGCAAGTTTATGA
AACCCTTCAAACACTGCATTTAATGCTGCCATGCATCCGATGAAACTCCA
AGCCGAAAACACGTTGTGTGCGGCCGTACGGTTCAGGTGGTGAAAAGAAC
GGTTTGCATTGATAGGTGCTGTTGAGTTTACAGTTGTTCGCGCTTCGCCC
CCCTCCCGCTGCCGCTACTGCCGCTACTGTCTTTGCCGCTGCTGCTGCTA
CTGCGGCTACCAACACATCATGACTTCATCCCTTGGGCTTATTGGTGCAC
AAAGGGCCGGACACCCACTGGGAGTATATCTTCTC
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Coding sequence (CDS) from alignment at P-littoralis_Contig158:208128..210562+

>mRNA_P-littoralis_Contig158.52.1 ID=mRNA_P-littoralis_Contig158.52.1|Name=mRNA_P-littoralis_Contig158.52.1|organism=Pylaiella littoralis U1_48|type=CDS|length=297bp|location=Sequence derived from alignment at P-littoralis_Contig158:208128..210562+ (Pylaiella littoralis U1_48)
CAGCTCTCGGTGATCACGAGCGCTGTCCTGGAGAGATTCGAAGACCGGGA
CTTCAATCCTGTGATGTTTCGTATCTACATGTTGGTGCTGGCCTTCGTGC
TTGTGGTGCATTTCATCGCCTGCGGATACTGGTTCGTCTCGAGGGCAAAT
GATCCTGAATTCGAGGGCATGTGGAGCCCTGAGCACGAGTATCTGGACGC
GGGCTTGTACCTGCAGTATTCCAGAGCTCTCTACTTCTCCCTCGTCATCA
CGTACGGAAACGACTTGAGGCCGGACACCCACTGGGAGTATATCTTC
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